organic compounds
of odorine
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand, and cDepartment of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
*Correspondence e-mail: hkfun@usm.my
The title compound, known as odorine or roxburghiline {systematic name: (S)-N-[(R)-1-cinnamoylpyrrolidin-2-yl]-2-methylbutanamide}, C18H24N2O2, is a nitrogenous compound isolated from the leaves of Aglaia odorata. The was determined by of the with data collected using Cu Kα radiation showing positions 2 and 2′ to be S and R, respectively. The pyrrolidine ring adopts an In the crystal, molecules are linked into chains along [010] by intermolecular N—H⋯O hydrogen bonds.
Related literature
For ring conformations, see: Cremer & Pople (1975). For standard bond-length data, see: Allen et al. (1987). For background to the Aglaia plants and their biological activity, see: Brader et al. (1998); Cui et al. (1997); Engelmeier et al. (2000); Hayashi et al. (1982); Inada et al. (2001); Nugroho et al. (1999); Purushothaman et al. 1979); Saifah et al. (1993); Shiengthong et al. (1979). For related structures, see: Babidge et al. (1980); Dumontet et al. (1996); Hayashi et al. (1982). For the stability of the temperature controller used in the data collection, see Cosier & Glazer (1986).
Experimental
Crystal data
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810034227/lh5122sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810034227/lh5122Isup2.hkl
Ground-dried leaves of A. odorata (53.70 g) were extracted with CH2Cl2 and CH3OH (each of 2 x 2 L) for a duration of 3 days at room temperature. The solvents were evaporated under reduced pressure to afford CH2Cl2 (23.50 g) and CH3OH (5.23 g) crude extracts, respectively. The CH2Cl2 crude extract (23.50 g) was further purified by quick
(QCC) over silica gel using hexane as and increasing polarity with EtOAc and CH3OH to afford 10 fractions (F1-F10). Fraction F10 (231.6 mg) was further separated by with acetone-hexane (3:7), yielding the title compound as white solid (15.6 mg). Colorless needle-shaped single crystals of the title compound suitable for x-ray were recrystallized from CH2Cl2 by the slow evaporation of the solvent at room temperature after several days, Mp. 476-478 K.The amide H atom was located in a difference map and refined isotropically. The remaining H atoms were placed in calculated positions with (C—H) = 0.98 for CH, 0.97 for CH2 and 0.96 Å for CH3 atoms. The Uiso values were constrained to be 1.5Ueq of the
for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups. The highest residual electron density peak is located at 0.73 Å from C6 and the deepest hole is located at 0.71 Å from C9. 1036 Friedel pairs were used to determine the absolute configuration.Several species of the genus Aglaia of the family Meliaceae are of ethnomedicinal values and have insecticidal (Brader et al., 1998), antifungal (Engelmeier et al., 2000) and cytotoxic (Saifah et al., 1993; Cui et al., 1997) activities. These interesting activities have prompted us to screen for further bioactive compounds from Aglaia odorata. Aglaia odorata known locally in Thai as "Pra-yong" or "Hom-glai" is a small tree occurring primarily in South-East Asia. The leaves and roots of this plant have been used in local folk medicine as a heart stimulant, febrifuge and to retrieve toxin by causing vomiting. The isolated compounds from this plant also show interesting biological activities such as anticancer (Inada et al., 2001), insecticidal (Nugroho et al., 1999) and anti-leukemic (Hayashi et al., 1982) activities. In the course of our research of chemical constituents and bioactive compounds from the leaves of A. odorata which were collected from Songkhla province in the southern part of Thailand, the title aminopyrrolidine odorine (I), also known as odorine (Shiengthong et al., 1979) or roxburghiline or N-cinnamoyl-2-(2-methylbutanoylamino)pyrrolidine (Purushothaman et al., 1979) was isolated. The previous report showed that (I) possesses cancer-chemopreventive activity (Inada et al., 2001). The α X-radiation with the being refined to 0.03 (18). We report herein the of (I).
of (I) was determined by making use of the of Cu KFig. 1 shows that the molecule of (I) possesses a 2-aminopyrrolidine ring linked by two amide functions to 2-methylbutyric acid and cinnamic acid. The pyrrolidine ring adopts an θ = 281.3 (2)° (Cremer & Pople, 1975). Atoms of the cinnamoyl (C1–C9/O1) moiety essentially lie on the same plane (r.m.s. 0.0216 (1) Å) with a max. deviation of 0.0583 (1) Å for atom O1. Atoms C13, C14, C15, N2 and O2 lie on the same plane (r.m.s. 0.0216 (1) Å). The mean plane through C13/C14/C15/N2/O2 makes the dihedral angle of 88.80 (7)° with the mean plane through the cinnamoyl moiety. The 2-methylbutanamide chain at C13 is pseudo-axial with the C14–N2–C13–C12 torsion angle = 125.55 (13)°. The orientation of the butyl group is described by the torsion angle C14–C15–C17–C18 = 68.78 (18)°. The bond distances in (I) are within normal ranges (Allen et al., 1987) and comparable with the related structures which are odorinol (Hayashi et al., 1982) and forbaglin A (Dumontet et al., 1996). The at atoms C15 and C13 or positions 2 and 2' of the odorine are S,R configurations which agree with the previous stereochemistry of odorine (Babidge et al., 1980).
with the puckered C12 atom having a deviation of 0.223 (1) Å and with the puckering parameters Q = 0.3522 (15) Å andIn the crystal packing of (I) (Fig. 2), the molecules are linked into chains along [010] through N2—H1N2···O1i hydrogen bonds (Fig. 2 and Table 1).
For ring conformations, see: Cremer & Pople (1975). For standard bond-length data, see: Allen et al. (1987). For background to the Aglaia plants and their biological activity, see: Brader et al. (1998); Cui et al. (1997); Engelmeier et al. (2000); Hayashi et al. (1982); Inada et al. (2001); Nugroho et al. (1999); Purushothaman et al. 1979); Saifah et al. (1993); Shiengthong et al. (1979). For related structures, see: Babidge et al. (1980); Dumontet et al. (1996); Hayashi et al. (1982). For the stability of the temperature controller used in the data collection, see Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C18H24N2O2 | F(000) = 648 |
Mr = 300.39 | Dx = 1.204 Mg m−3 |
Monoclinic, C2 | Melting point = 476–478 K |
Hall symbol: C 2y | Cu Kα radiation, λ = 1.54178 Å |
a = 18.8909 (3) Å | Cell parameters from 2625 reflections |
b = 6.8398 (1) Å | θ = 6.8–67.4° |
c = 13.4174 (2) Å | µ = 0.63 mm−1 |
β = 107.054 (1)° | T = 100 K |
V = 1657.43 (4) Å3 | Needle, colorless |
Z = 4 | 0.57 × 0.16 × 0.13 mm |
Bruker APEXII DUO CCD area-detector diffractometer | 2625 independent reflections |
Radiation source: sealed tube | 2606 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.042 |
φ and ω scans | θmax = 67.4°, θmin = 6.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −22→22 |
Tmin = 0.718, Tmax = 0.924 | k = −7→6 |
10656 measured reflections | l = −16→16 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.033 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.096 | w = 1/[σ2(Fo2) + (0.0595P)2 + 0.2381P] where P = (Fo2 + 2Fc2)/3 |
S = 1.16 | (Δ/σ)max = 0.001 |
2625 reflections | Δρmax = 0.21 e Å−3 |
205 parameters | Δρmin = −0.27 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 1036 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.03 (18) |
C18H24N2O2 | V = 1657.43 (4) Å3 |
Mr = 300.39 | Z = 4 |
Monoclinic, C2 | Cu Kα radiation |
a = 18.8909 (3) Å | µ = 0.63 mm−1 |
b = 6.8398 (1) Å | T = 100 K |
c = 13.4174 (2) Å | 0.57 × 0.16 × 0.13 mm |
β = 107.054 (1)° |
Bruker APEXII DUO CCD area-detector diffractometer | 2625 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2606 reflections with I > 2σ(I) |
Tmin = 0.718, Tmax = 0.924 | Rint = 0.042 |
10656 measured reflections |
R[F2 > 2σ(F2)] = 0.033 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.096 | Δρmax = 0.21 e Å−3 |
S = 1.16 | Δρmin = −0.27 e Å−3 |
2625 reflections | Absolute structure: Flack (1983), 1036 Friedel pairs |
205 parameters | Absolute structure parameter: 0.03 (18) |
1 restraint |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.68617 (5) | 0.99471 (16) | 0.55658 (7) | 0.0243 (2) | |
O2 | 0.97777 (6) | 0.88734 (17) | 0.73395 (8) | 0.0315 (3) | |
N1 | 0.79446 (6) | 0.99195 (19) | 0.51776 (8) | 0.0218 (2) | |
H1N2 | 0.8859 (10) | 0.691 (3) | 0.5433 (14) | 0.030 (5)* | |
N2 | 0.90244 (6) | 0.78710 (19) | 0.57796 (9) | 0.0217 (3) | |
C1 | 0.87323 (8) | 0.9894 (3) | 0.92951 (11) | 0.0299 (3) | |
H1A | 0.9038 | 1.0059 | 0.8870 | 0.036* | |
C2 | 0.90374 (8) | 0.9818 (3) | 1.03621 (11) | 0.0348 (4) | |
H2A | 0.9548 | 0.9923 | 1.0651 | 0.042* | |
C3 | 0.85882 (8) | 0.9585 (3) | 1.10083 (11) | 0.0325 (4) | |
H3A | 0.8797 | 0.9538 | 1.1728 | 0.039* | |
C4 | 0.78306 (9) | 0.9425 (3) | 1.05783 (11) | 0.0337 (4) | |
H4A | 0.7528 | 0.9273 | 1.1008 | 0.040* | |
C5 | 0.75221 (8) | 0.9490 (2) | 0.95025 (11) | 0.0285 (3) | |
H5A | 0.7012 | 0.9376 | 0.9217 | 0.034* | |
C6 | 0.79653 (7) | 0.9725 (2) | 0.88465 (10) | 0.0233 (3) | |
C7 | 0.76210 (7) | 0.9768 (2) | 0.77145 (10) | 0.0236 (3) | |
H7A | 0.7107 | 0.9679 | 0.7481 | 0.028* | |
C8 | 0.79691 (7) | 0.9920 (2) | 0.69898 (9) | 0.0219 (3) | |
H8A | 0.8483 | 1.0019 | 0.7190 | 0.026* | |
C9 | 0.75502 (7) | 0.9936 (2) | 0.58677 (9) | 0.0207 (3) | |
C10 | 0.75678 (7) | 0.9890 (2) | 0.40514 (9) | 0.0233 (3) | |
H10A | 0.7308 | 1.1109 | 0.3826 | 0.028* | |
H10B | 0.7217 | 0.8819 | 0.3871 | 0.028* | |
C11 | 0.81922 (8) | 0.9613 (2) | 0.35579 (10) | 0.0275 (3) | |
H11A | 0.8097 | 1.0348 | 0.2914 | 0.033* | |
H11B | 0.8253 | 0.8243 | 0.3414 | 0.033* | |
C12 | 0.88773 (8) | 1.0396 (2) | 0.43814 (11) | 0.0276 (3) | |
H12A | 0.9325 | 0.9808 | 0.4303 | 0.033* | |
H12B | 0.8912 | 1.1805 | 0.4329 | 0.033* | |
C13 | 0.87590 (7) | 0.9813 (2) | 0.54206 (10) | 0.0222 (3) | |
H13A | 0.8990 | 1.0781 | 0.5956 | 0.027* | |
C14 | 0.95055 (7) | 0.7544 (2) | 0.67329 (11) | 0.0237 (3) | |
C15 | 0.97075 (8) | 0.5412 (2) | 0.69919 (11) | 0.0293 (3) | |
H15A | 0.9332 | 0.4576 | 0.6527 | 0.035* | |
C16 | 1.04558 (10) | 0.5039 (3) | 0.67983 (16) | 0.0512 (5) | |
H16A | 1.0413 | 0.5272 | 0.6077 | 0.077* | |
H16B | 1.0603 | 0.3708 | 0.6971 | 0.077* | |
H16C | 1.0821 | 0.5903 | 0.7225 | 0.077* | |
C17 | 0.97552 (9) | 0.4934 (3) | 0.81232 (12) | 0.0356 (4) | |
H17A | 0.9971 | 0.3644 | 0.8290 | 0.043* | |
H17B | 1.0085 | 0.5865 | 0.8576 | 0.043* | |
C18 | 0.90143 (10) | 0.4977 (3) | 0.83531 (12) | 0.0406 (4) | |
H18A | 0.9089 | 0.4729 | 0.9081 | 0.061* | |
H18B | 0.8696 | 0.3990 | 0.7948 | 0.061* | |
H18C | 0.8790 | 0.6238 | 0.8176 | 0.061* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0229 (5) | 0.0260 (6) | 0.0230 (4) | 0.0040 (4) | 0.0051 (3) | 0.0031 (4) |
O2 | 0.0301 (5) | 0.0298 (6) | 0.0277 (5) | −0.0005 (4) | −0.0025 (4) | −0.0062 (5) |
N1 | 0.0222 (5) | 0.0231 (6) | 0.0193 (5) | 0.0013 (5) | 0.0045 (4) | 0.0013 (5) |
N2 | 0.0225 (5) | 0.0209 (7) | 0.0202 (6) | −0.0006 (5) | 0.0039 (4) | −0.0046 (5) |
C1 | 0.0277 (7) | 0.0399 (9) | 0.0226 (6) | 0.0012 (7) | 0.0080 (5) | 0.0015 (7) |
C2 | 0.0269 (7) | 0.0507 (10) | 0.0245 (7) | 0.0036 (7) | 0.0038 (5) | −0.0006 (8) |
C3 | 0.0384 (8) | 0.0390 (10) | 0.0180 (6) | 0.0045 (7) | 0.0050 (5) | 0.0014 (6) |
C4 | 0.0379 (8) | 0.0409 (11) | 0.0253 (7) | 0.0019 (7) | 0.0137 (6) | 0.0029 (6) |
C5 | 0.0263 (7) | 0.0324 (9) | 0.0264 (7) | 0.0017 (6) | 0.0074 (5) | 0.0016 (6) |
C6 | 0.0268 (6) | 0.0209 (8) | 0.0217 (6) | 0.0049 (6) | 0.0063 (5) | 0.0022 (6) |
C7 | 0.0234 (6) | 0.0214 (7) | 0.0246 (7) | 0.0038 (6) | 0.0048 (5) | 0.0019 (6) |
C8 | 0.0228 (6) | 0.0194 (7) | 0.0215 (6) | 0.0031 (6) | 0.0032 (5) | 0.0014 (6) |
C9 | 0.0239 (6) | 0.0153 (7) | 0.0221 (6) | 0.0031 (6) | 0.0053 (5) | 0.0014 (6) |
C10 | 0.0275 (6) | 0.0218 (7) | 0.0187 (6) | 0.0032 (6) | 0.0037 (5) | 0.0011 (6) |
C11 | 0.0354 (7) | 0.0280 (8) | 0.0201 (6) | 0.0028 (6) | 0.0098 (5) | 0.0017 (6) |
C12 | 0.0304 (7) | 0.0277 (8) | 0.0276 (7) | −0.0002 (6) | 0.0132 (5) | 0.0028 (6) |
C13 | 0.0219 (6) | 0.0214 (7) | 0.0234 (6) | −0.0015 (5) | 0.0070 (5) | −0.0018 (6) |
C14 | 0.0174 (6) | 0.0291 (9) | 0.0244 (7) | 0.0013 (5) | 0.0058 (5) | −0.0013 (6) |
C15 | 0.0278 (7) | 0.0293 (9) | 0.0290 (7) | 0.0059 (6) | 0.0058 (6) | −0.0003 (6) |
C16 | 0.0451 (9) | 0.0479 (13) | 0.0675 (12) | 0.0202 (9) | 0.0274 (9) | 0.0085 (10) |
C17 | 0.0397 (8) | 0.0319 (9) | 0.0304 (7) | 0.0055 (7) | 0.0027 (6) | 0.0066 (7) |
C18 | 0.0535 (9) | 0.0358 (10) | 0.0347 (8) | 0.0013 (8) | 0.0163 (7) | 0.0039 (8) |
O1—C9 | 1.2437 (16) | C10—C11 | 1.5243 (18) |
O2—C14 | 1.2280 (19) | C10—H10A | 0.9700 |
N1—C9 | 1.3480 (17) | C10—H10B | 0.9700 |
N1—C10 | 1.4695 (15) | C11—C12 | 1.531 (2) |
N1—C13 | 1.4780 (16) | C11—H11A | 0.9700 |
N2—C14 | 1.3529 (17) | C11—H11B | 0.9700 |
N2—C13 | 1.451 (2) | C12—C13 | 1.5284 (18) |
N2—H1N2 | 0.81 (2) | C12—H12A | 0.9700 |
C1—C2 | 1.3787 (19) | C12—H12B | 0.9700 |
C1—C6 | 1.401 (2) | C13—H13A | 0.9800 |
C1—H1A | 0.9300 | C14—C15 | 1.522 (2) |
C2—C3 | 1.389 (2) | C15—C17 | 1.529 (2) |
C2—H2A | 0.9300 | C15—C16 | 1.532 (2) |
C3—C4 | 1.382 (2) | C15—H15A | 0.9800 |
C3—H3A | 0.9300 | C16—H16A | 0.9600 |
C4—C5 | 1.3898 (19) | C16—H16B | 0.9600 |
C4—H4A | 0.9300 | C16—H16C | 0.9600 |
C5—C6 | 1.3907 (19) | C17—C18 | 1.519 (2) |
C5—H5A | 0.9300 | C17—H17A | 0.9700 |
C6—C7 | 1.4667 (17) | C17—H17B | 0.9700 |
C7—C8 | 1.3282 (18) | C18—H18A | 0.9600 |
C7—H7A | 0.9300 | C18—H18B | 0.9600 |
C8—C9 | 1.4813 (17) | C18—H18C | 0.9600 |
C8—H8A | 0.9300 | ||
C9—N1—C10 | 120.52 (10) | C10—C11—H11B | 111.0 |
C9—N1—C13 | 126.73 (10) | C12—C11—H11B | 111.0 |
C10—N1—C13 | 112.65 (10) | H11A—C11—H11B | 109.0 |
C14—N2—C13 | 122.40 (12) | C13—C12—C11 | 104.37 (11) |
C14—N2—H1N2 | 116.5 (13) | C13—C12—H12A | 110.9 |
C13—N2—H1N2 | 120.9 (13) | C11—C12—H12A | 110.9 |
C2—C1—C6 | 120.50 (13) | C13—C12—H12B | 110.9 |
C2—C1—H1A | 119.7 | C11—C12—H12B | 110.9 |
C6—C1—H1A | 119.7 | H12A—C12—H12B | 108.9 |
C1—C2—C3 | 120.45 (13) | N2—C13—N1 | 110.75 (11) |
C1—C2—H2A | 119.8 | N2—C13—C12 | 114.38 (12) |
C3—C2—H2A | 119.8 | N1—C13—C12 | 101.95 (10) |
C4—C3—C2 | 119.75 (13) | N2—C13—H13A | 109.8 |
C4—C3—H3A | 120.1 | N1—C13—H13A | 109.8 |
C2—C3—H3A | 120.1 | C12—C13—H13A | 109.8 |
C3—C4—C5 | 119.91 (14) | O2—C14—N2 | 122.61 (14) |
C3—C4—H4A | 120.0 | O2—C14—C15 | 122.00 (12) |
C5—C4—H4A | 120.0 | N2—C14—C15 | 115.36 (12) |
C4—C5—C6 | 120.94 (13) | C14—C15—C17 | 111.68 (13) |
C4—C5—H5A | 119.5 | C14—C15—C16 | 107.63 (14) |
C6—C5—H5A | 119.5 | C17—C15—C16 | 110.13 (13) |
C5—C6—C1 | 118.44 (12) | C14—C15—H15A | 109.1 |
C5—C6—C7 | 119.43 (12) | C17—C15—H15A | 109.1 |
C1—C6—C7 | 122.13 (12) | C16—C15—H15A | 109.1 |
C8—C7—C6 | 126.53 (12) | C15—C16—H16A | 109.5 |
C8—C7—H7A | 116.7 | C15—C16—H16B | 109.5 |
C6—C7—H7A | 116.7 | H16A—C16—H16B | 109.5 |
C7—C8—C9 | 120.87 (11) | C15—C16—H16C | 109.5 |
C7—C8—H8A | 119.6 | H16A—C16—H16C | 109.5 |
C9—C8—H8A | 119.6 | H16B—C16—H16C | 109.5 |
O1—C9—N1 | 120.81 (11) | C18—C17—C15 | 114.07 (12) |
O1—C9—C8 | 121.80 (11) | C18—C17—H17A | 108.7 |
N1—C9—C8 | 117.39 (11) | C15—C17—H17A | 108.7 |
N1—C10—C11 | 104.19 (10) | C18—C17—H17B | 108.7 |
N1—C10—H10A | 110.9 | C15—C17—H17B | 108.7 |
C11—C10—H10A | 110.9 | H17A—C17—H17B | 107.6 |
N1—C10—H10B | 110.9 | C17—C18—H18A | 109.5 |
C11—C10—H10B | 110.9 | C17—C18—H18B | 109.5 |
H10A—C10—H10B | 108.9 | H18A—C18—H18B | 109.5 |
C10—C11—C12 | 103.95 (11) | C17—C18—H18C | 109.5 |
C10—C11—H11A | 111.0 | H18A—C18—H18C | 109.5 |
C12—C11—H11A | 111.0 | H18B—C18—H18C | 109.5 |
C6—C1—C2—C3 | −0.4 (3) | N1—C10—C11—C12 | −24.24 (15) |
C1—C2—C3—C4 | 0.2 (3) | C10—C11—C12—C13 | 35.81 (15) |
C2—C3—C4—C5 | 0.2 (3) | C14—N2—C13—N1 | −119.95 (13) |
C3—C4—C5—C6 | −0.3 (3) | C14—N2—C13—C12 | 125.55 (13) |
C4—C5—C6—C1 | 0.0 (2) | C9—N1—C13—N2 | 72.51 (17) |
C4—C5—C6—C7 | 179.40 (15) | C10—N1—C13—N2 | −103.96 (13) |
C2—C1—C6—C5 | 0.4 (3) | C9—N1—C13—C12 | −165.39 (14) |
C2—C1—C6—C7 | −179.02 (17) | C10—N1—C13—C12 | 18.14 (16) |
C5—C6—C7—C8 | −177.81 (15) | C11—C12—C13—N2 | 86.96 (14) |
C1—C6—C7—C8 | 1.6 (3) | C11—C12—C13—N1 | −32.61 (14) |
C6—C7—C8—C9 | 179.71 (14) | C13—N2—C14—O2 | −3.6 (2) |
C10—N1—C9—O1 | −0.7 (2) | C13—N2—C14—C15 | 178.31 (11) |
C13—N1—C9—O1 | −176.95 (14) | O2—C14—C15—C17 | 41.89 (18) |
C10—N1—C9—C8 | 178.64 (13) | N2—C14—C15—C17 | −139.99 (13) |
C13—N1—C9—C8 | 2.4 (2) | O2—C14—C15—C16 | −79.11 (18) |
C7—C8—C9—O1 | 5.1 (2) | N2—C14—C15—C16 | 99.01 (15) |
C7—C8—C9—N1 | −174.23 (14) | C14—C15—C17—C18 | 68.78 (18) |
C9—N1—C10—C11 | −172.93 (12) | C16—C15—C17—C18 | −171.68 (16) |
C13—N1—C10—C11 | 3.78 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···O1i | 0.81 (2) | 2.09 (2) | 2.8789 (16) | 163 (2) |
Symmetry code: (i) −x+3/2, y−1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C18H24N2O2 |
Mr | 300.39 |
Crystal system, space group | Monoclinic, C2 |
Temperature (K) | 100 |
a, b, c (Å) | 18.8909 (3), 6.8398 (1), 13.4174 (2) |
β (°) | 107.054 (1) |
V (Å3) | 1657.43 (4) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.63 |
Crystal size (mm) | 0.57 × 0.16 × 0.13 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.718, 0.924 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10656, 2625, 2606 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.599 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.096, 1.16 |
No. of reflections | 2625 |
No. of parameters | 205 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.21, −0.27 |
Absolute structure | Flack (1983), 1036 Friedel pairs |
Absolute structure parameter | 0.03 (18) |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···O1i | 0.81 (2) | 2.09 (2) | 2.8789 (16) | 163 (2) |
Symmetry code: (i) −x+3/2, y−1/2, −z+1. |
Acknowledgements
OY thanks the Office of the Higher Education Commission, Thailand, for support by grant funding under the program Strategic Scholarships for Frontier Research Network for the Joint PhD Program Thai Doctoral degree. The authors thank the Thailand Research Fund (BRG5280013) and Prince of Songkla University for financial support. The authors also thank Universiti Sains Malaysia for the Research University Golden Goose grant No. 1001/PFIZIK/811012.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Several species of the genus Aglaia of the family Meliaceae are of ethnomedicinal values and have insecticidal (Brader et al., 1998), antifungal (Engelmeier et al., 2000) and cytotoxic (Saifah et al., 1993; Cui et al., 1997) activities. These interesting activities have prompted us to screen for further bioactive compounds from Aglaia odorata. Aglaia odorata known locally in Thai as "Pra-yong" or "Hom-glai" is a small tree occurring primarily in South-East Asia. The leaves and roots of this plant have been used in local folk medicine as a heart stimulant, febrifuge and to retrieve toxin by causing vomiting. The isolated compounds from this plant also show interesting biological activities such as anticancer (Inada et al., 2001), insecticidal (Nugroho et al., 1999) and anti-leukemic (Hayashi et al., 1982) activities. In the course of our research of chemical constituents and bioactive compounds from the leaves of A. odorata which were collected from Songkhla province in the southern part of Thailand, the title aminopyrrolidine odorine (I), also known as odorine (Shiengthong et al., 1979) or roxburghiline or N-cinnamoyl-2-(2-methylbutanoylamino)pyrrolidine (Purushothaman et al., 1979) was isolated. The previous report showed that (I) possesses cancer-chemopreventive activity (Inada et al., 2001). The absolute configuration of (I) was determined by making use of the anomalous scattering of Cu Kα X-radiation with the Flack parameter being refined to 0.03 (18). We report herein the crystal structure of (I).
Fig. 1 shows that the molecule of (I) possesses a 2-aminopyrrolidine ring linked by two amide functions to 2-methylbutyric acid and cinnamic acid. The pyrrolidine ring adopts an envelope conformation with the puckered C12 atom having a deviation of 0.223 (1) Å and with the puckering parameters Q = 0.3522 (15) Å and θ = 281.3 (2)° (Cremer & Pople, 1975). Atoms of the cinnamoyl (C1–C9/O1) moiety essentially lie on the same plane (r.m.s. 0.0216 (1) Å) with a max. deviation of 0.0583 (1) Å for atom O1. Atoms C13, C14, C15, N2 and O2 lie on the same plane (r.m.s. 0.0216 (1) Å). The mean plane through C13/C14/C15/N2/O2 makes the dihedral angle of 88.80 (7)° with the mean plane through the cinnamoyl moiety. The 2-methylbutanamide chain at C13 is pseudo-axial with the C14–N2–C13–C12 torsion angle = 125.55 (13)°. The orientation of the butyl group is described by the torsion angle C14–C15–C17–C18 = 68.78 (18)°. The bond distances in (I) are within normal ranges (Allen et al., 1987) and comparable with the related structures which are odorinol (Hayashi et al., 1982) and forbaglin A (Dumontet et al., 1996). The absolute configuration at atoms C15 and C13 or positions 2 and 2' of the odorine are S,R configurations which agree with the previous stereochemistry of odorine (Babidge et al., 1980).
In the crystal packing of (I) (Fig. 2), the molecules are linked into chains along [010] through N2—H1N2···O1i hydrogen bonds (Fig. 2 and Table 1).