organic compounds
7-(2-Chlorophenyl)-2,6,9-trimethyldibenzo[b,h][1,6]naphthyridine
aCentre of Advanced Study in Crystallography and Biophysics, University of Madras, Guindy Campus, Chennai 600 025, India, and bDepartment of Chemistry, Bharathiar University, Coimbatore 641 046, India
*Correspondence e-mail: d_velu@yahoo.com
In the title compound, C25H19ClN2, the dibenzo[b,h][1,6]naphthyridine system is planar to within 0.16 (2) Å, and the chlorophenyl ring is inclined to it by 82.53 (7)°. In the crystal, molecules are linked by C—H⋯N hydrogen bonds, forming chains propagating in [100]. There are also a number of weak π–π stacking interactions present [centroid–centroid distances = 3.8531 (1) and 3.7631 (1) Å].
Related literature
For the biological properties of [1,6]naphthyridine derivatives, see: Zhuang et al. (2003); Bedard et al. (2003); Hinschberger et al. (2003); Naik et al. (2006). For the synthesis of the precursor of the title compound, see: Nandha Kumar et al. (2007). For the crystal structures of other naphthrydine derivatives, see: Sivakumar et al. (2003); Fun et al. (2009); Vennila et al. (2010). For standard bond lengths, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810030576/su2198sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810030576/su2198Isup2.hkl
The precursor of the title compoud, 2,6,4'-trimethyl-4-(N-phenylamino) quinoline, was prepared following the procedure of (Nandha Kumar et al.., 2007). 4-Chloro-2,6-dimethylquinoline (0.002 mol) was reacted with p-toluidine (0.002 mol) under neat conditions at 433 K for 30 mins. The product obtained was washed with water, dried, and purified by
over silica gel using an ethyl acetate:methanol (95:5) mixture to obtain the product as a white solid. A mixture of 2,6,4'-trimethyl-4-(N-phenylamino) quinoline (0.001 mol) and o-chlorobenzoic acid (0.0011 mol) was added to polyphosphoric acid (1 g of P2O5 and 0.5 ml H3PO4) and heated at 433 k for 5 h. The reaction mixture was poured into ice water, neutralized with saturated sodium bicarbonate solution to remove the excess of o-chlorobenzoic acid, extracted with ethyl acetate. It was then purified using silica gel and the product was eluted with a petroleum ether:ethyl acetate (99:1) mixture to get the final product as a pale yellow solid. Recrystallization using ethanol gave yellow block-like crystals of the title compound suitable for X-ray diffraction analysis.The H-atoms of methyl group C20 were disordered over two positions and were placed in calculated positions and treated as riding atoms, each with an occupancy of 0.5. The remaining H-atoms were positioned geometrically and treated as riding on their parent atoms; N—H = 0.86 Å, C—H = 0.93, 0.96 and 0.97 Å, for CH(aromatic), methyl and methylene H-atoms, respectively, with Uiso = k × Ueq(parent N, or C atom), where k = 1.5 for methyl H-atoms and 1.2 for all other H-atoms.
[1,6]naphthyridine derivatives are reported to be a good class of HIV integrase inhibitors (Zhuang et al., 2003). Their antiviral properties have also been reported by (Bedard et al., 2003), and they were proved to be selective antagonists of 5-HT4 receptors (Hinschberger et al., 2003). The planar fused heterocyclic system in the title compound may lead to its DNA intercalating property (Naik et al., 2006). Due to this biological importance, the title compound was chosen for structural studies.
The title compound, illustrated in Fig. 1, consists of a dibenzo[b,h][1,6]naphthyridine core with chlorophenyl and methyl group substitutions. The bond lengths are in normal ranges (Allen et al., 1987), and are similar to those observed for other naphthrydine derivatives (Sivakumar et al., 2003; Fun et al., 2009; Vennila et al., 2010), as are the bond angles. The dihedral angle between the fused ring dibenzo[b,h][1,6]naphthyridine system (N1/N2/C1/C6/C8-C10/C12-C14; planar to within 0.16 (2) Å) and the chlorophenyl ring was found to be 82.53 (7)°. There is an apparent steric clash between the methyl group attached to C8 and the chlorophenyl ring attached to C14. The C9-C8-C19 bond angle of 123.05 (13)° and the C9-C14-C21 bond angle of 124.24 (12)°, suggests that these groups are being forced apart.
The crystal packing is stabilized by C—H···N hydrogen bonds forming chain like patterns propagating along [100] (Table 1, Fig. 2). A number of weak π–π stacking interactions may also stablize the crystal packing (see Table 2 for details).
For the biological properties of [1,6]naphthyridine derivatives, see: Zhuang et al. (2003); Bedard et al. (2003); Hinschberger et al. (2003); Naik et al. (2006). For the synthesis of the precursor of the title compound, see: Nandha Kumar et al. (2007). For the crystal structures of other naphthrydine derivatives, see: Sivakumar et al. (2003); Fun et al. (2009); Vennila et al. (2010). For standard bond lengths, see: Allen et al. (1987).
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C25H19ClN2 | Z = 2 |
Mr = 382.87 | F(000) = 400 |
Triclinic, P1 | Dx = 1.341 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.5575 (4) Å | Cell parameters from 4797 reflections |
b = 10.6538 (7) Å | θ = 1.5–28.5° |
c = 14.3522 (9) Å | µ = 0.21 mm−1 |
α = 93.755 (3)° | T = 293 K |
β = 103.099 (3)° | Block, yellow |
γ = 102.074 (3)° | 0.27 × 0.25 × 0.23 mm |
V = 948.25 (10) Å3 |
Bruker SMART APEXII area-detector diffractometer | 4771 independent reflections |
Radiation source: fine-focus sealed tube | 3514 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
ω and φ scans | θmax = 28.5°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −8→8 |
Tmin = 0.944, Tmax = 0.952 | k = −14→14 |
17317 measured reflections | l = −19→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.143 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0694P)2 + 0.2763P] where P = (Fo2 + 2Fc2)/3 |
4771 reflections | (Δ/σ)max = 0.001 |
255 parameters | Δρmax = 0.32 e Å−3 |
0 restraints | Δρmin = −0.51 e Å−3 |
C25H19ClN2 | γ = 102.074 (3)° |
Mr = 382.87 | V = 948.25 (10) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.5575 (4) Å | Mo Kα radiation |
b = 10.6538 (7) Å | µ = 0.21 mm−1 |
c = 14.3522 (9) Å | T = 293 K |
α = 93.755 (3)° | 0.27 × 0.25 × 0.23 mm |
β = 103.099 (3)° |
Bruker SMART APEXII area-detector diffractometer | 4771 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 3514 reflections with I > 2σ(I) |
Tmin = 0.944, Tmax = 0.952 | Rint = 0.025 |
17317 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.143 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.32 e Å−3 |
4771 reflections | Δρmin = −0.51 e Å−3 |
255 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cl1 | 0.22259 (9) | 0.49217 (5) | 0.41457 (4) | 0.0809 (2) | |
C9 | 0.1060 (2) | 0.63949 (13) | 0.20011 (10) | 0.0345 (3) | |
C14 | −0.0361 (2) | 0.61889 (13) | 0.25997 (11) | 0.0354 (3) | |
N11 | 0.1756 (2) | 0.87266 (11) | 0.24184 (9) | 0.0396 (3) | |
C10 | 0.2149 (2) | 0.77063 (13) | 0.19709 (10) | 0.0353 (3) | |
C13 | −0.0816 (2) | 0.72702 (14) | 0.30668 (11) | 0.0371 (3) | |
C6 | 0.3810 (2) | 0.79371 (14) | 0.14465 (10) | 0.0367 (3) | |
C1 | 0.4188 (2) | 0.68758 (14) | 0.09475 (11) | 0.0382 (3) | |
C12 | 0.0265 (2) | 0.85236 (14) | 0.29330 (11) | 0.0379 (3) | |
N7 | 0.2977 (2) | 0.56271 (12) | 0.09035 (9) | 0.0405 (3) | |
C5 | 0.5087 (3) | 0.91727 (15) | 0.14455 (12) | 0.0427 (3) | |
H5 | 0.4829 | 0.9885 | 0.1770 | 0.051* | |
C21 | −0.1424 (2) | 0.48827 (13) | 0.28004 (11) | 0.0383 (3) | |
C15 | −0.2299 (3) | 0.71701 (15) | 0.36619 (12) | 0.0426 (3) | |
H15 | −0.2983 | 0.6356 | 0.3770 | 0.051* | |
C2 | 0.5826 (3) | 0.70513 (17) | 0.04574 (13) | 0.0478 (4) | |
H2 | 0.6075 | 0.6347 | 0.0119 | 0.057* | |
C18 | −0.0219 (3) | 0.96186 (15) | 0.33756 (12) | 0.0459 (4) | |
H18 | 0.0465 | 1.0444 | 0.3289 | 0.055* | |
C8 | 0.1537 (2) | 0.53873 (14) | 0.13957 (11) | 0.0376 (3) | |
C16 | −0.2740 (3) | 0.82394 (16) | 0.40769 (12) | 0.0435 (4) | |
C4 | 0.6710 (3) | 0.93469 (16) | 0.09730 (12) | 0.0463 (4) | |
C26 | −0.0401 (3) | 0.42446 (15) | 0.35054 (12) | 0.0450 (4) | |
C17 | −0.1666 (3) | 0.94743 (16) | 0.39226 (12) | 0.0471 (4) | |
H17 | −0.1960 | 1.0206 | 0.4204 | 0.057* | |
C22 | −0.3525 (3) | 0.42820 (16) | 0.23021 (15) | 0.0529 (4) | |
H22 | −0.4273 | 0.4693 | 0.1833 | 0.063* | |
C3 | 0.7064 (3) | 0.82702 (17) | 0.04798 (13) | 0.0512 (4) | |
H3 | 0.8162 | 0.8381 | 0.0160 | 0.061* | |
C23 | −0.4512 (3) | 0.30820 (18) | 0.24972 (17) | 0.0622 (5) | |
H23 | −0.5900 | 0.2684 | 0.2146 | 0.075* | |
C19 | 0.0335 (3) | 0.39954 (15) | 0.12548 (14) | 0.0502 (4) | |
H19A | 0.0790 | 0.3520 | 0.0779 | 0.075* | |
H19B | −0.1181 | 0.3942 | 0.1043 | 0.075* | |
H19C | 0.0630 | 0.3635 | 0.1853 | 0.075* | |
C25 | −0.1401 (3) | 0.30526 (16) | 0.37131 (14) | 0.0563 (5) | |
H25 | −0.0683 | 0.2646 | 0.4195 | 0.068* | |
C24 | −0.3463 (3) | 0.24775 (17) | 0.32009 (15) | 0.0583 (5) | |
H24 | −0.4144 | 0.1676 | 0.3334 | 0.070* | |
C20 | 0.8124 (3) | 1.06674 (18) | 0.10020 (15) | 0.0613 (5) | |
H20A | 0.9161 | 1.0606 | 0.0635 | 0.092* | 0.50 |
H20B | 0.8857 | 1.0999 | 0.1658 | 0.092* | 0.50 |
H20C | 0.7254 | 1.1239 | 0.0732 | 0.092* | 0.50 |
H20D | 0.7687 | 1.1290 | 0.1382 | 0.092* | 0.50 |
H20E | 0.7992 | 1.0897 | 0.0359 | 0.092* | 0.50 |
H20F | 0.9594 | 1.0657 | 0.1284 | 0.092* | 0.50 |
C27 | −0.4337 (3) | 0.81378 (19) | 0.46916 (15) | 0.0603 (5) | |
H27A | −0.5716 | 0.8179 | 0.4303 | 0.090* | |
H27B | −0.3858 | 0.8839 | 0.5203 | 0.090* | |
H27C | −0.4454 | 0.7331 | 0.4960 | 0.090* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0751 (4) | 0.0620 (3) | 0.0805 (4) | −0.0032 (2) | −0.0189 (3) | 0.0237 (3) |
C9 | 0.0369 (7) | 0.0290 (6) | 0.0383 (7) | 0.0081 (5) | 0.0095 (6) | 0.0067 (5) |
C14 | 0.0374 (7) | 0.0284 (7) | 0.0415 (8) | 0.0080 (5) | 0.0105 (6) | 0.0080 (6) |
N11 | 0.0477 (7) | 0.0294 (6) | 0.0430 (7) | 0.0072 (5) | 0.0149 (6) | 0.0055 (5) |
C10 | 0.0388 (7) | 0.0309 (7) | 0.0359 (7) | 0.0069 (6) | 0.0089 (6) | 0.0071 (5) |
C13 | 0.0415 (8) | 0.0318 (7) | 0.0391 (8) | 0.0092 (6) | 0.0111 (6) | 0.0063 (6) |
C6 | 0.0393 (7) | 0.0333 (7) | 0.0366 (7) | 0.0048 (6) | 0.0098 (6) | 0.0074 (6) |
C1 | 0.0400 (8) | 0.0353 (7) | 0.0388 (8) | 0.0057 (6) | 0.0110 (6) | 0.0062 (6) |
C12 | 0.0451 (8) | 0.0318 (7) | 0.0372 (7) | 0.0093 (6) | 0.0103 (6) | 0.0051 (6) |
N7 | 0.0450 (7) | 0.0326 (6) | 0.0461 (7) | 0.0072 (5) | 0.0171 (6) | 0.0044 (5) |
C5 | 0.0490 (9) | 0.0339 (7) | 0.0428 (8) | 0.0014 (6) | 0.0137 (7) | 0.0050 (6) |
C21 | 0.0423 (8) | 0.0293 (7) | 0.0478 (8) | 0.0088 (6) | 0.0194 (6) | 0.0061 (6) |
C15 | 0.0464 (8) | 0.0366 (8) | 0.0481 (9) | 0.0089 (6) | 0.0180 (7) | 0.0078 (6) |
C2 | 0.0514 (9) | 0.0449 (9) | 0.0506 (9) | 0.0080 (7) | 0.0230 (7) | 0.0033 (7) |
C18 | 0.0616 (10) | 0.0308 (7) | 0.0475 (9) | 0.0104 (7) | 0.0181 (8) | 0.0046 (6) |
C8 | 0.0411 (8) | 0.0308 (7) | 0.0416 (8) | 0.0083 (6) | 0.0114 (6) | 0.0057 (6) |
C16 | 0.0455 (8) | 0.0433 (8) | 0.0435 (8) | 0.0122 (7) | 0.0131 (7) | 0.0031 (7) |
C4 | 0.0469 (9) | 0.0426 (8) | 0.0446 (9) | −0.0026 (7) | 0.0128 (7) | 0.0081 (7) |
C26 | 0.0552 (9) | 0.0343 (7) | 0.0445 (9) | 0.0064 (7) | 0.0134 (7) | 0.0069 (6) |
C17 | 0.0599 (10) | 0.0380 (8) | 0.0470 (9) | 0.0170 (7) | 0.0165 (8) | 0.0001 (7) |
C22 | 0.0446 (9) | 0.0416 (9) | 0.0728 (12) | 0.0090 (7) | 0.0142 (8) | 0.0142 (8) |
C3 | 0.0487 (9) | 0.0539 (10) | 0.0520 (10) | 0.0013 (7) | 0.0239 (8) | 0.0071 (8) |
C23 | 0.0433 (9) | 0.0473 (10) | 0.0937 (15) | −0.0002 (8) | 0.0221 (10) | 0.0087 (10) |
C19 | 0.0589 (10) | 0.0321 (7) | 0.0617 (11) | 0.0036 (7) | 0.0268 (8) | −0.0009 (7) |
C25 | 0.0803 (13) | 0.0368 (8) | 0.0536 (10) | 0.0088 (8) | 0.0216 (9) | 0.0145 (7) |
C24 | 0.0701 (12) | 0.0359 (8) | 0.0749 (13) | 0.0029 (8) | 0.0367 (10) | 0.0121 (8) |
C20 | 0.0643 (12) | 0.0476 (10) | 0.0667 (12) | −0.0099 (8) | 0.0265 (10) | 0.0076 (9) |
C27 | 0.0630 (11) | 0.0554 (11) | 0.0694 (12) | 0.0128 (9) | 0.0334 (10) | −0.0011 (9) |
Cl1—C26 | 1.7342 (18) | C8—C19 | 1.504 (2) |
C9—C14 | 1.399 (2) | C16—C17 | 1.413 (2) |
C9—C10 | 1.4381 (19) | C16—C27 | 1.507 (2) |
C9—C8 | 1.465 (2) | C4—C3 | 1.397 (2) |
C14—C13 | 1.414 (2) | C4—C20 | 1.507 (2) |
C14—C21 | 1.4978 (19) | C26—C25 | 1.386 (2) |
N11—C10 | 1.3272 (18) | C17—H17 | 0.9300 |
N11—C12 | 1.3449 (19) | C22—C23 | 1.384 (2) |
C10—C6 | 1.448 (2) | C22—H22 | 0.9300 |
C13—C12 | 1.422 (2) | C3—H3 | 0.9300 |
C13—C15 | 1.425 (2) | C23—C24 | 1.365 (3) |
C6—C1 | 1.395 (2) | C23—H23 | 0.9300 |
C6—C5 | 1.405 (2) | C19—H19A | 0.9600 |
C1—N7 | 1.3888 (19) | C19—H19B | 0.9600 |
C1—C2 | 1.399 (2) | C19—H19C | 0.9600 |
C12—C18 | 1.419 (2) | C25—C24 | 1.374 (3) |
N7—C8 | 1.2966 (19) | C25—H25 | 0.9300 |
C5—C4 | 1.374 (2) | C24—H24 | 0.9300 |
C5—H5 | 0.9300 | C20—H20A | 0.9600 |
C21—C26 | 1.382 (2) | C20—H20B | 0.9600 |
C21—C22 | 1.394 (2) | C20—H20C | 0.9600 |
C15—C16 | 1.365 (2) | C20—H20D | 0.9600 |
C15—H15 | 0.9300 | C20—H20E | 0.9600 |
C2—C3 | 1.374 (2) | C20—H20F | 0.9600 |
C2—H2 | 0.9300 | C27—H27A | 0.9600 |
C18—C17 | 1.353 (2) | C27—H27B | 0.9600 |
C18—H18 | 0.9300 | C27—H27C | 0.9600 |
C14—C9—C10 | 117.59 (12) | C18—C17—H17 | 119.2 |
C14—C9—C8 | 125.62 (13) | C16—C17—H17 | 119.2 |
C10—C9—C8 | 116.79 (13) | C23—C22—C21 | 120.83 (17) |
C9—C14—C13 | 118.93 (13) | C23—C22—H22 | 119.6 |
C9—C14—C21 | 124.24 (12) | C21—C22—H22 | 119.6 |
C13—C14—C21 | 116.82 (13) | C2—C3—C4 | 121.42 (15) |
C10—N11—C12 | 118.23 (12) | C2—C3—H3 | 119.3 |
N11—C10—C9 | 123.65 (13) | C4—C3—H3 | 119.3 |
N11—C10—C6 | 117.60 (13) | C24—C23—C22 | 120.50 (18) |
C9—C10—C6 | 118.73 (12) | C24—C23—H23 | 119.8 |
C14—C13—C12 | 118.07 (13) | C22—C23—H23 | 119.8 |
C14—C13—C15 | 123.54 (13) | C8—C19—H19A | 109.5 |
C12—C13—C15 | 118.39 (13) | C8—C19—H19B | 109.5 |
C1—C6—C5 | 119.07 (14) | H19A—C19—H19B | 109.5 |
C1—C6—C10 | 118.10 (13) | C8—C19—H19C | 109.5 |
C5—C6—C10 | 122.80 (14) | H19A—C19—H19C | 109.5 |
N7—C1—C6 | 122.51 (13) | H19B—C19—H19C | 109.5 |
N7—C1—C2 | 117.55 (13) | C24—C25—C26 | 119.42 (17) |
C6—C1—C2 | 119.94 (14) | C24—C25—H25 | 120.3 |
N11—C12—C18 | 118.06 (13) | C26—C25—H25 | 120.3 |
N11—C12—C13 | 123.19 (13) | C23—C24—C25 | 120.02 (16) |
C18—C12—C13 | 118.73 (14) | C23—C24—H24 | 120.0 |
C8—N7—C1 | 120.50 (13) | C25—C24—H24 | 120.0 |
C4—C5—C6 | 121.15 (15) | C4—C20—H20A | 109.5 |
C4—C5—H5 | 119.4 | C4—C20—H20B | 109.5 |
C6—C5—H5 | 119.4 | H20A—C20—H20B | 109.5 |
C26—C21—C22 | 117.31 (14) | C4—C20—H20C | 109.5 |
C26—C21—C14 | 121.67 (14) | H20A—C20—H20C | 109.5 |
C22—C21—C14 | 120.98 (14) | H20B—C20—H20C | 109.5 |
C16—C15—C13 | 121.68 (15) | C4—C20—H20D | 109.5 |
C16—C15—H15 | 119.2 | H20A—C20—H20D | 141.1 |
C13—C15—H15 | 119.2 | H20B—C20—H20D | 56.3 |
C3—C2—C1 | 119.59 (15) | H20C—C20—H20D | 56.3 |
C3—C2—H2 | 120.2 | C4—C20—H20E | 109.5 |
C1—C2—H2 | 120.2 | H20A—C20—H20E | 56.3 |
C17—C18—C12 | 120.70 (15) | H20B—C20—H20E | 141.1 |
C17—C18—H18 | 119.6 | H20C—C20—H20E | 56.3 |
C12—C18—H18 | 119.6 | H20D—C20—H20E | 109.5 |
N7—C8—C9 | 122.88 (13) | C4—C20—H20F | 109.5 |
N7—C8—C19 | 114.02 (13) | H20A—C20—H20F | 56.3 |
C9—C8—C19 | 123.05 (13) | H20B—C20—H20F | 56.3 |
C15—C16—C17 | 118.83 (15) | H20C—C20—H20F | 141.1 |
C15—C16—C27 | 121.87 (15) | H20D—C20—H20F | 109.5 |
C17—C16—C27 | 119.31 (14) | H20E—C20—H20F | 109.5 |
C5—C4—C3 | 118.82 (15) | C16—C27—H27A | 109.5 |
C5—C4—C20 | 120.96 (16) | C16—C27—H27B | 109.5 |
C3—C4—C20 | 120.20 (15) | H27A—C27—H27B | 109.5 |
C21—C26—C25 | 121.90 (16) | C16—C27—H27C | 109.5 |
C21—C26—Cl1 | 119.98 (12) | H27A—C27—H27C | 109.5 |
C25—C26—Cl1 | 118.11 (14) | H27B—C27—H27C | 109.5 |
C18—C17—C16 | 121.65 (14) | ||
C10—C9—C14—C13 | 6.1 (2) | C13—C14—C21—C22 | 82.85 (19) |
C8—C9—C14—C13 | −173.70 (13) | C14—C13—C15—C16 | −178.02 (15) |
C10—C9—C14—C21 | −172.70 (13) | C12—C13—C15—C16 | 1.9 (2) |
C8—C9—C14—C21 | 7.5 (2) | N7—C1—C2—C3 | 179.93 (16) |
C12—N11—C10—C9 | 0.4 (2) | C6—C1—C2—C3 | 0.6 (3) |
C12—N11—C10—C6 | −177.97 (13) | N11—C12—C18—C17 | −178.30 (15) |
C14—C9—C10—N11 | −5.4 (2) | C13—C12—C18—C17 | 0.6 (2) |
C8—C9—C10—N11 | 174.47 (13) | C1—N7—C8—C9 | 1.4 (2) |
C14—C9—C10—C6 | 172.95 (13) | C1—N7—C8—C19 | 178.83 (14) |
C8—C9—C10—C6 | −7.2 (2) | C14—C9—C8—N7 | −175.27 (14) |
C9—C14—C13—C12 | −2.4 (2) | C10—C9—C8—N7 | 4.9 (2) |
C21—C14—C13—C12 | 176.51 (13) | C14—C9—C8—C19 | 7.5 (2) |
C9—C14—C13—C15 | 177.54 (14) | C10—C9—C8—C19 | −172.28 (14) |
C21—C14—C13—C15 | −3.6 (2) | C13—C15—C16—C17 | −1.1 (2) |
N11—C10—C6—C1 | −177.95 (13) | C13—C15—C16—C27 | 178.85 (16) |
C9—C10—C6—C1 | 3.6 (2) | C6—C5—C4—C3 | 0.6 (3) |
N11—C10—C6—C5 | 4.1 (2) | C6—C5—C4—C20 | −177.91 (16) |
C9—C10—C6—C5 | −174.35 (14) | C22—C21—C26—C25 | 0.3 (2) |
C5—C6—C1—N7 | −179.11 (14) | C14—C21—C26—C25 | 178.09 (15) |
C10—C6—C1—N7 | 2.8 (2) | C22—C21—C26—Cl1 | 179.19 (13) |
C5—C6—C1—C2 | 0.1 (2) | C14—C21—C26—Cl1 | −3.0 (2) |
C10—C6—C1—C2 | −177.91 (14) | C12—C18—C17—C16 | 0.2 (3) |
C10—N11—C12—C18 | −177.28 (14) | C15—C16—C17—C18 | 0.0 (3) |
C10—N11—C12—C13 | 3.8 (2) | C27—C16—C17—C18 | −179.91 (17) |
C14—C13—C12—N11 | −2.8 (2) | C26—C21—C22—C23 | −1.4 (3) |
C15—C13—C12—N11 | 177.25 (14) | C14—C21—C22—C23 | −179.24 (16) |
C14—C13—C12—C18 | 178.29 (14) | C1—C2—C3—C4 | −0.8 (3) |
C15—C13—C12—C18 | −1.6 (2) | C5—C4—C3—C2 | 0.2 (3) |
C6—C1—N7—C8 | −5.5 (2) | C20—C4—C3—C2 | 178.72 (18) |
C2—C1—N7—C8 | 175.23 (15) | C21—C22—C23—C24 | 1.7 (3) |
C1—C6—C5—C4 | −0.8 (2) | C21—C26—C25—C24 | 0.6 (3) |
C10—C6—C5—C4 | 177.17 (14) | Cl1—C26—C25—C24 | −178.38 (14) |
C9—C14—C21—C26 | 83.9 (2) | C22—C23—C24—C25 | −0.9 (3) |
C13—C14—C21—C26 | −94.89 (17) | C26—C25—C24—C23 | −0.3 (3) |
C9—C14—C21—C22 | −98.31 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
C22—H22···N7i | 0.93 | 2.42 | 3.318 (2) | 162 |
Symmetry code: (i) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C25H19ClN2 |
Mr | 382.87 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 6.5575 (4), 10.6538 (7), 14.3522 (9) |
α, β, γ (°) | 93.755 (3), 103.099 (3), 102.074 (3) |
V (Å3) | 948.25 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.21 |
Crystal size (mm) | 0.27 × 0.25 × 0.23 |
Data collection | |
Diffractometer | Bruker SMART APEXII area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.944, 0.952 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17317, 4771, 3514 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.671 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.143, 1.00 |
No. of reflections | 4771 |
No. of parameters | 255 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.32, −0.51 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C22—H22···N7i | 0.93 | 2.42 | 3.318 (2) | 162 |
Symmetry code: (i) x−1, y, z. |
Cg2 is centroid of ring N11,C9,C10,C12-C14; Cg3 is centroid of ring C1-C6; Cg4 is centroid of ring C12,C13,C15-C18.
Symmetry codes : (i) -1+x, y,z; (ii) 1+x, y,z. top
Cg(I) | Cg(J) | Centroid-to-Centroid |
Cg(2) | Cg(3i) | 3.8531 (1) |
Cg(3) | Cg(2ii) | 3.8531 (1) |
Cg(3) | Cg(4ii) | 3.7631 (1) |
Cg(4) | Cg(3i) | 3.7631 (1) |
Acknowledgements
KNV thanks the CSIR for providing a Senior Research Fellowship. DV acknowledges the Department of Science and Technology (DST) for providing data collection facilities under major research projects and is also thankful for the financial support to the Department under UGC–SAP and DST–FIST programs.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CSD CrossRef Web of Science Google Scholar
Bedard, J. S., Lucille, L. H., Thomas, S., Alice, C., John, D., John, H., Laval, C., Haolun, J. & Robert, F. R. (2003). Antimicrob. Agents Chemother. 44, 929–937. Web of Science CrossRef Google Scholar
Bruker (2001). SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2007). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Fun, H.-K., Yeap, C. S., Das, N. K., Mahapatra, A. K. & Goswami, S. (2009). Acta Cryst. E65, o1747. Web of Science CSD CrossRef IUCr Journals Google Scholar
Hinschberger, A., Butt, S., Lelong, V., Boulouard, M., Dumuis, A., Dauphin, F., Bureau, R., Pfeiffer, B., Renard, P. & Rault, S. (2003). J. Med. Chem. 46, 138–147. Web of Science CrossRef PubMed CAS Google Scholar
Naik, T. R., Naik, S. H., Raghavendra, M. & Naik, S. G. K. (2006). ARKIVOC, xv, 84–94. CrossRef Google Scholar
Nandha Kumar, R., Suresh, T., Dhanabal, T. & Mohan, P. S. (2007). Indian J. Chem. Sect B. 46, 995–1000. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sivakumar, B., SethuSankar, K., Senthil Kumar, U. P., Jeyaraman, R. & Velmurugan, D. (2003). Acta Cryst. C59, o153–o155. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Vennila, K. N., Prabha, K., Manoj, M., Prasad, K. J. R. & Velmurugan, D. (2010). Acta Cryst. E66, o1823. Web of Science CSD CrossRef IUCr Journals Google Scholar
Zhuang, L., Wai, J. S., Embrey, W. M., Fisher, E. T., Egbertson, S. M., Payne, S. L., Guare, P. J., Vacca, P. J., Hazuda, J. D., Felock, J. P., Wolfe, L. A., Stillmock, A. K., Witmer, V. M., Moyer, G., Schleif, A. W., Gabryelski, J. L., Leonard, M. Y., Lynch, J. J., Michelson, R. S. & Young, D. S. (2003). J. Med. Chem. 46, 453–456. Web of Science CrossRef PubMed CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
[1,6]naphthyridine derivatives are reported to be a good class of HIV integrase inhibitors (Zhuang et al., 2003). Their antiviral properties have also been reported by (Bedard et al., 2003), and they were proved to be selective antagonists of 5-HT4 receptors (Hinschberger et al., 2003). The planar fused heterocyclic system in the title compound may lead to its DNA intercalating property (Naik et al., 2006). Due to this biological importance, the title compound was chosen for structural studies.
The title compound, illustrated in Fig. 1, consists of a dibenzo[b,h][1,6]naphthyridine core with chlorophenyl and methyl group substitutions. The bond lengths are in normal ranges (Allen et al., 1987), and are similar to those observed for other naphthrydine derivatives (Sivakumar et al., 2003; Fun et al., 2009; Vennila et al., 2010), as are the bond angles. The dihedral angle between the fused ring dibenzo[b,h][1,6]naphthyridine system (N1/N2/C1/C6/C8-C10/C12-C14; planar to within 0.16 (2) Å) and the chlorophenyl ring was found to be 82.53 (7)°. There is an apparent steric clash between the methyl group attached to C8 and the chlorophenyl ring attached to C14. The C9-C8-C19 bond angle of 123.05 (13)° and the C9-C14-C21 bond angle of 124.24 (12)°, suggests that these groups are being forced apart.
The crystal packing is stabilized by C—H···N hydrogen bonds forming chain like patterns propagating along [100] (Table 1, Fig. 2). A number of weak π–π stacking interactions may also stablize the crystal packing (see Table 2 for details).