organic compounds
2-(2,3-Dioxoindolin-1-yl)ethyl 4-(4-nitrophenyl)piperazine-1-carbodithioate
aDepartment of Chemistry, Capital Normal University, Beijing 100048, People's Republic of China
*Correspondence e-mail: sl_cao@sohu.com
In the title compound, C21H20N4O4S2, the piperazine ring adopts a chair conformation. The 1-ethylindoline-2,3-dione system links to one N atom of the piperazine ring via a carbodithioate group. The indoline-2,3-dione ring and the nitrobenzene ring subtend adihedral angle of 37.27 (7)°. In the weak C—H⋯O and π–π stacking interactions [centroid–centroid distances = 3.534 (5) and 3.797 (5) Å] may help to establish the packing.
Related literature
For the fungicidal activity of dithiocarbamates, see: Farghaly et al. (1999); Xu et al. (2002); Ozkirimli et al. (2005) and for their antibacterial activity, see: Chourasia et al. (1999); Imamura et al. (2001). For the effective antitumor activity of dithiocarbamates, see: Cao et al. (2005); Gaspari et al. (2006). For a description of the Cambridge Structural Database, see: Allen (2002).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell APEX2 and SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810030618/zq2052sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810030618/zq2052Isup2.hkl
A suspension of 1-(4-nitrophenyl) piperazine (2.4 mmol), carbon disulfide (0.72 ml,12 mmol) and anhydrous potassium phosphate (0.51 g, 2.4 mmol) in N,N-dimethylformamide (15 ml) was stirred at room temperature for 30 min. Then, 1-(2-bromoethyl) indoline-2,3-dione (2 mmol) was added and the stirring was continued for 30 min. The reaction mixture was poured into water (100 ml) and the resulting precipitate was separated by filtration and purified by
(CC) on silica gel with dichloromethane/methanol = 95:5, v/v, as an to give the title compound (Rf = 0.79, dichloromethane/methanol = 95:5, v/v; m.p. 252–254°C; yield 90.6%). The orange crystals of the title compound were obtained by slow evaporation from a solution of dichloromethane/N,N-dimethylformamide 50:50 (v/v) at room temperature.All the H atoms were discernible in the difference electron density maps. Nevertheless, the hydrogen atoms were placed into idealized positions and allowed to ride on the carrier atoms, with C—H = 0.93 and 0.97 Å for aryl and methylene H atoms, respectively, and with Uiso(H) = 1.2Ueq(C).
Dithiocarbamates represent a broad spectrum of biological activities such as fungicidal (Farghaly et al., 1999; Xu et al., 2002; Ozkirimli et al., 2005) and antibacterial effects (Chourasia et al., 1999; Imamura et al., 2001). Dithiocarbamates were also proved to have in vitro and in vivo effective antitumor activities (Cao et al., 2005; Gaspari et al., 2006). In an effort to obtain new and more potent antibacterial and antitumor compounds, we synthesized the title compound, a kind of novel dithiocarbamate derivative. Here, we report the
of the title compound.The X-ray crystal analysis shown that the piperazine ring adopts a chair conformation. The indole-2,3-dione ring and the nitrobenzene ring exhibit a dihedral angle of 37.27 (7)° (Fig.1). Considering the molecule with a U shape conformation, two molecules arrange in a face-to-face mode interacting through intermolecular hydrogen bonding (C13—H13···O2i (nitro) = 2.52 Å, D···A 3.252 (2) Å, D—H···A 136.2°). The dimers are further stacked through π–π and C—H···O intermolecular interactions: C5—H5···O3ii (dione) = 2.33 Å (D···A 3.125 (1) Å, D—H···A 143.3°) and the centroid-centroid distance between the C1—C2—C3—C4—C5—C6 (benzene) and C11iii—C16iii—C17iii—C18iii—N4iii (pyrrole) rings is 3.534 (5) Å, and the distance between the C1—C2—C3—C4—C5—C6 (benzene) and C11iii—C12iii—C13iii—C14iii—C15iii—C16iii rings is 3.797 (5) Å. The packing structure is shown along the a axis in Fig.2 [symmetry codes: (i) –x+0.5, -y + 1/2, -z + 1; (ii) x, -y + 2, z + 1/2; (iii) x, -y + 1, z + 1/2].
For the fungicidal activity of dithiocarbamates, see: Farghaly et al. (1999); Xu et al. (2002); Ozkirimli et al. (2005) and for their antibacterial activity, see: Chourasia et al. (1999); Imamura et al. (2001). For the effective antitumor activity of dithiocarbamates, see: Cao et al. (2005); Gaspari et al. (2006). For a description of the Cambridge Structural Database, see: Allen (2002).
Data collection: APEX2 (Bruker, 2007); cell
APEX2 and SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C21H20N4O4S2 | F(000) = 1904 |
Mr = 456.53 | Dx = 1.463 Mg m−3 Dm = 1.463 Mg m−3 Dm measured by not measured |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
a = 34.4244 (8) Å | Cell parameters from 8247 reflections |
b = 6.8754 (2) Å | θ = 2.3–29.2° |
c = 17.9938 (4) Å | µ = 0.29 mm−1 |
β = 103.185 (1)° | T = 296 K |
V = 4146.53 (18) Å3 | Block, orange |
Z = 8 | 0.15 × 0.13 × 0.10 mm |
Bruker APEXII CCD area-detector diffractometer | 4309 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.027 |
Graphite monochromator | θmax = 29.8°, θmin = 2.3° |
phi and ω scans | h = −45→48 |
25340 measured reflections | k = −9→7 |
5843 independent reflections | l = −24→22 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.107 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0528P)2 + 1.1993P] where P = (Fo2 + 2Fc2)/3 |
5843 reflections | (Δ/σ)max < 0.001 |
280 parameters | Δρmax = 0.27 e Å−3 |
0 restraints | Δρmin = −0.18 e Å−3 |
C21H20N4O4S2 | V = 4146.53 (18) Å3 |
Mr = 456.53 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 34.4244 (8) Å | µ = 0.29 mm−1 |
b = 6.8754 (2) Å | T = 296 K |
c = 17.9938 (4) Å | 0.15 × 0.13 × 0.10 mm |
β = 103.185 (1)° |
Bruker APEXII CCD area-detector diffractometer | 4309 reflections with I > 2σ(I) |
25340 measured reflections | Rint = 0.027 |
5843 independent reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.107 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.27 e Å−3 |
5843 reflections | Δρmin = −0.18 e Å−3 |
280 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.22169 (4) | 0.0960 (3) | 0.55107 (9) | 0.0525 (4) | |
C2 | 0.20345 (5) | −0.0339 (3) | 0.49616 (10) | 0.0586 (4) | |
H2 | 0.2133 | −0.1597 | 0.4960 | 0.070* | |
C3 | 0.17055 (5) | 0.0221 (2) | 0.44143 (9) | 0.0522 (4) | |
H3 | 0.1585 | −0.0664 | 0.4042 | 0.063* | |
C4 | 0.15485 (4) | 0.2101 (2) | 0.44084 (8) | 0.0418 (3) | |
C5 | 0.17505 (5) | 0.3391 (3) | 0.49705 (9) | 0.0529 (4) | |
H5 | 0.1660 | 0.4664 | 0.4974 | 0.063* | |
C6 | 0.20780 (5) | 0.2823 (3) | 0.55145 (10) | 0.0561 (4) | |
H6 | 0.2205 | 0.3700 | 0.5884 | 0.067* | |
C7 | 0.10263 (5) | 0.1336 (2) | 0.32661 (9) | 0.0469 (3) | |
H7A | 0.1046 | 0.0009 | 0.3453 | 0.056* | |
H7B | 0.1175 | 0.1426 | 0.2870 | 0.056* | |
C8 | 0.05960 (5) | 0.1827 (2) | 0.29344 (9) | 0.0476 (3) | |
H8A | 0.0493 | 0.0991 | 0.2500 | 0.057* | |
H8B | 0.0441 | 0.1595 | 0.3313 | 0.057* | |
C9 | 0.07011 (5) | 0.5142 (2) | 0.33419 (8) | 0.0499 (4) | |
H9A | 0.0544 | 0.4955 | 0.3721 | 0.060* | |
H9B | 0.0673 | 0.6487 | 0.3175 | 0.060* | |
C10 | 0.11353 (5) | 0.4710 (2) | 0.36929 (9) | 0.0509 (4) | |
H10A | 0.1295 | 0.5070 | 0.3335 | 0.061* | |
H10B | 0.1222 | 0.5493 | 0.4149 | 0.061* | |
C11 | 0.12259 (4) | 0.8667 (2) | 0.12798 (7) | 0.0400 (3) | |
C12 | 0.13746 (5) | 0.7170 (3) | 0.17715 (9) | 0.0526 (4) | |
H12 | 0.1250 | 0.5962 | 0.1733 | 0.063* | |
C13 | 0.17187 (5) | 0.7545 (4) | 0.23274 (10) | 0.0698 (6) | |
H13 | 0.1826 | 0.6558 | 0.2666 | 0.084* | |
C14 | 0.19059 (5) | 0.9315 (4) | 0.23961 (11) | 0.0757 (6) | |
H14 | 0.2135 | 0.9509 | 0.2779 | 0.091* | |
C15 | 0.17588 (5) | 1.0806 (3) | 0.19041 (11) | 0.0672 (5) | |
H15 | 0.1885 | 1.2012 | 0.1948 | 0.081* | |
C16 | 0.14155 (4) | 1.0463 (2) | 0.13361 (9) | 0.0483 (4) | |
C17 | 0.12020 (5) | 1.1645 (2) | 0.07061 (10) | 0.0509 (4) | |
C18 | 0.08641 (4) | 1.0341 (2) | 0.02587 (8) | 0.0436 (3) | |
C19 | 0.06096 (4) | 0.7055 (2) | 0.04397 (8) | 0.0415 (3) | |
H19A | 0.0745 | 0.5833 | 0.0592 | 0.050* | |
H19B | 0.0517 | 0.7040 | −0.0111 | 0.050* | |
C20 | 0.02520 (4) | 0.7204 (2) | 0.07963 (8) | 0.0411 (3) | |
H20A | 0.0061 | 0.6212 | 0.0573 | 0.049* | |
H20B | 0.0126 | 0.8459 | 0.0665 | 0.049* | |
C22 | 0.04231 (4) | 0.4390 (2) | 0.19615 (7) | 0.0368 (3) | |
N1 | 0.12011 (4) | 0.26548 (18) | 0.38917 (7) | 0.0420 (3) | |
N2 | 0.05537 (4) | 0.38618 (19) | 0.26924 (7) | 0.0446 (3) | |
N3 | 0.25633 (5) | 0.0353 (3) | 0.60869 (9) | 0.0688 (4) | |
N4 | 0.08920 (3) | 0.86365 (18) | 0.06542 (6) | 0.0386 (3) | |
O1 | 0.27296 (4) | 0.1532 (3) | 0.65616 (9) | 0.0878 (5) | |
O2 | 0.26757 (6) | −0.1329 (3) | 0.60752 (10) | 0.1117 (7) | |
O3 | 0.12620 (4) | 1.32892 (19) | 0.05188 (9) | 0.0767 (4) | |
O4 | 0.06274 (4) | 1.07378 (18) | −0.03291 (6) | 0.0592 (3) | |
S1 | 0.031276 (12) | 0.28227 (6) | 0.12387 (2) | 0.04687 (11) | |
S2 | 0.036236 (11) | 0.69395 (5) | 0.18228 (2) | 0.04120 (10) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0424 (8) | 0.0715 (12) | 0.0423 (8) | 0.0063 (8) | 0.0071 (6) | 0.0042 (8) |
C2 | 0.0598 (10) | 0.0559 (11) | 0.0567 (10) | 0.0124 (8) | 0.0061 (8) | 0.0048 (8) |
C3 | 0.0558 (9) | 0.0501 (9) | 0.0463 (8) | 0.0047 (7) | 0.0025 (7) | −0.0024 (7) |
C4 | 0.0403 (7) | 0.0501 (9) | 0.0361 (7) | 0.0013 (6) | 0.0108 (6) | 0.0001 (6) |
C5 | 0.0470 (8) | 0.0566 (10) | 0.0516 (9) | 0.0072 (7) | 0.0043 (7) | −0.0127 (8) |
C6 | 0.0455 (8) | 0.0718 (12) | 0.0479 (9) | 0.0012 (8) | 0.0047 (7) | −0.0132 (8) |
C7 | 0.0557 (8) | 0.0401 (8) | 0.0420 (8) | 0.0016 (7) | 0.0051 (6) | −0.0050 (6) |
C8 | 0.0551 (8) | 0.0400 (8) | 0.0429 (8) | −0.0050 (7) | 0.0011 (6) | 0.0027 (6) |
C9 | 0.0687 (10) | 0.0426 (9) | 0.0328 (7) | 0.0089 (7) | −0.0002 (6) | −0.0043 (6) |
C10 | 0.0633 (9) | 0.0414 (8) | 0.0417 (8) | −0.0043 (7) | −0.0011 (7) | −0.0021 (7) |
C11 | 0.0381 (7) | 0.0504 (8) | 0.0315 (7) | 0.0028 (6) | 0.0078 (5) | 0.0015 (6) |
C12 | 0.0474 (8) | 0.0650 (11) | 0.0425 (8) | 0.0055 (7) | 0.0040 (6) | 0.0119 (7) |
C13 | 0.0485 (9) | 0.1117 (17) | 0.0451 (9) | 0.0125 (10) | 0.0025 (7) | 0.0187 (10) |
C14 | 0.0451 (9) | 0.130 (2) | 0.0468 (10) | −0.0066 (11) | −0.0011 (7) | −0.0083 (11) |
C15 | 0.0524 (10) | 0.0881 (15) | 0.0624 (11) | −0.0210 (10) | 0.0160 (8) | −0.0200 (10) |
C16 | 0.0455 (8) | 0.0548 (10) | 0.0470 (8) | −0.0061 (7) | 0.0158 (6) | −0.0067 (7) |
C17 | 0.0543 (9) | 0.0430 (9) | 0.0628 (10) | 0.0008 (7) | 0.0289 (8) | 0.0016 (7) |
C18 | 0.0490 (8) | 0.0447 (8) | 0.0405 (7) | 0.0114 (6) | 0.0177 (6) | 0.0067 (6) |
C19 | 0.0469 (7) | 0.0418 (8) | 0.0329 (7) | 0.0010 (6) | 0.0029 (5) | −0.0030 (6) |
C20 | 0.0401 (7) | 0.0442 (8) | 0.0348 (7) | 0.0019 (6) | −0.0005 (5) | 0.0030 (6) |
C22 | 0.0335 (6) | 0.0390 (7) | 0.0363 (7) | −0.0002 (5) | 0.0048 (5) | −0.0025 (5) |
N1 | 0.0470 (6) | 0.0385 (7) | 0.0374 (6) | 0.0021 (5) | 0.0032 (5) | −0.0027 (5) |
N2 | 0.0545 (7) | 0.0387 (7) | 0.0357 (6) | 0.0014 (5) | 0.0000 (5) | −0.0014 (5) |
N3 | 0.0573 (9) | 0.0930 (14) | 0.0513 (9) | 0.0138 (9) | 0.0020 (7) | 0.0054 (9) |
N4 | 0.0404 (6) | 0.0400 (6) | 0.0333 (6) | 0.0021 (5) | 0.0042 (5) | 0.0037 (5) |
O1 | 0.0680 (8) | 0.1118 (13) | 0.0681 (9) | 0.0036 (9) | −0.0170 (7) | −0.0075 (9) |
O2 | 0.1188 (14) | 0.1077 (14) | 0.0826 (11) | 0.0530 (12) | −0.0310 (10) | −0.0040 (10) |
O3 | 0.0829 (9) | 0.0482 (7) | 0.1107 (11) | −0.0045 (7) | 0.0461 (9) | 0.0118 (7) |
O4 | 0.0647 (7) | 0.0675 (8) | 0.0443 (6) | 0.0220 (6) | 0.0101 (5) | 0.0179 (5) |
S1 | 0.0547 (2) | 0.0437 (2) | 0.0383 (2) | −0.00326 (16) | 0.00241 (15) | −0.00880 (15) |
S2 | 0.0496 (2) | 0.0381 (2) | 0.03489 (18) | 0.00262 (14) | 0.00753 (14) | −0.00231 (14) |
C1—C6 | 1.368 (3) | C11—C16 | 1.390 (2) |
C1—C2 | 1.373 (2) | C11—N4 | 1.4136 (18) |
C1—N3 | 1.452 (2) | C12—C13 | 1.389 (2) |
C2—C3 | 1.375 (2) | C12—H12 | 0.9300 |
C2—H2 | 0.9300 | C13—C14 | 1.369 (3) |
C3—C4 | 1.400 (2) | C13—H13 | 0.9300 |
C3—H3 | 0.9300 | C14—C15 | 1.374 (3) |
C4—N1 | 1.3899 (19) | C14—H14 | 0.9300 |
C4—C5 | 1.404 (2) | C15—C16 | 1.395 (2) |
C5—C6 | 1.371 (2) | C15—H15 | 0.9300 |
C5—H5 | 0.9300 | C16—C17 | 1.451 (2) |
C6—H6 | 0.9300 | C17—O3 | 1.211 (2) |
C7—N1 | 1.4635 (19) | C17—C18 | 1.542 (2) |
C7—C8 | 1.504 (2) | C18—O4 | 1.2097 (17) |
C7—H7A | 0.9700 | C18—N4 | 1.3633 (19) |
C7—H7B | 0.9700 | C19—N4 | 1.4511 (19) |
C8—N2 | 1.462 (2) | C19—C20 | 1.516 (2) |
C8—H8A | 0.9700 | C19—H19A | 0.9700 |
C8—H8B | 0.9700 | C19—H19B | 0.9700 |
C9—N2 | 1.4585 (18) | C20—S2 | 1.8080 (14) |
C9—C10 | 1.513 (2) | C20—H20A | 0.9700 |
C9—H9A | 0.9700 | C20—H20B | 0.9700 |
C9—H9B | 0.9700 | C22—N2 | 1.3394 (17) |
C10—N1 | 1.4624 (19) | C22—S1 | 1.6650 (14) |
C10—H10A | 0.9700 | C22—S2 | 1.7760 (14) |
C10—H10B | 0.9700 | N3—O2 | 1.221 (2) |
C11—C12 | 1.377 (2) | N3—O1 | 1.221 (2) |
C6—C1—C2 | 120.64 (15) | C13—C12—H12 | 121.5 |
C6—C1—N3 | 119.78 (16) | C14—C13—C12 | 122.45 (19) |
C2—C1—N3 | 119.58 (17) | C14—C13—H13 | 118.8 |
C1—C2—C3 | 120.01 (17) | C12—C13—H13 | 118.8 |
C1—C2—H2 | 120.0 | C13—C14—C15 | 120.56 (17) |
C3—C2—H2 | 120.0 | C13—C14—H14 | 119.7 |
C2—C3—C4 | 121.14 (16) | C15—C14—H14 | 119.7 |
C2—C3—H3 | 119.4 | C14—C15—C16 | 118.17 (19) |
C4—C3—H3 | 119.4 | C14—C15—H15 | 120.9 |
N1—C4—C3 | 121.97 (14) | C16—C15—H15 | 120.9 |
N1—C4—C5 | 121.19 (14) | C11—C16—C15 | 120.60 (17) |
C3—C4—C5 | 116.79 (14) | C11—C16—C17 | 107.15 (14) |
C6—C5—C4 | 121.74 (16) | C15—C16—C17 | 132.16 (17) |
C6—C5—H5 | 119.1 | O3—C17—C16 | 130.71 (17) |
C4—C5—H5 | 119.1 | O3—C17—C18 | 123.61 (17) |
C1—C6—C5 | 119.65 (16) | C16—C17—C18 | 105.65 (13) |
C1—C6—H6 | 120.2 | O4—C18—N4 | 127.11 (15) |
C5—C6—H6 | 120.2 | O4—C18—C17 | 127.08 (15) |
N1—C7—C8 | 111.19 (13) | N4—C18—C17 | 105.80 (12) |
N1—C7—H7A | 109.4 | N4—C19—C20 | 113.34 (12) |
C8—C7—H7A | 109.4 | N4—C19—H19A | 108.9 |
N1—C7—H7B | 109.4 | C20—C19—H19A | 108.9 |
C8—C7—H7B | 109.4 | N4—C19—H19B | 108.9 |
H7A—C7—H7B | 108.0 | C20—C19—H19B | 108.9 |
N2—C8—C7 | 110.79 (13) | H19A—C19—H19B | 107.7 |
N2—C8—H8A | 109.5 | C19—C20—S2 | 115.08 (10) |
C7—C8—H8A | 109.5 | C19—C20—H20A | 108.5 |
N2—C8—H8B | 109.5 | S2—C20—H20A | 108.5 |
C7—C8—H8B | 109.5 | C19—C20—H20B | 108.5 |
H8A—C8—H8B | 108.1 | S2—C20—H20B | 108.5 |
N2—C9—C10 | 110.25 (13) | H20A—C20—H20B | 107.5 |
N2—C9—H9A | 109.6 | N2—C22—S1 | 123.85 (11) |
C10—C9—H9A | 109.6 | N2—C22—S2 | 114.09 (10) |
N2—C9—H9B | 109.6 | S1—C22—S2 | 122.04 (8) |
C10—C9—H9B | 109.6 | C4—N1—C10 | 119.33 (12) |
H9A—C9—H9B | 108.1 | C4—N1—C7 | 119.01 (12) |
N1—C10—C9 | 112.02 (13) | C10—N1—C7 | 113.37 (12) |
N1—C10—H10A | 109.2 | C22—N2—C9 | 126.91 (13) |
C9—C10—H10A | 109.2 | C22—N2—C8 | 122.69 (12) |
N1—C10—H10B | 109.2 | C9—N2—C8 | 110.23 (11) |
C9—C10—H10B | 109.2 | O2—N3—O1 | 122.74 (18) |
H10A—C10—H10B | 107.9 | O2—N3—C1 | 118.16 (18) |
C12—C11—C16 | 121.17 (14) | O1—N3—C1 | 119.10 (18) |
C12—C11—N4 | 128.02 (15) | C18—N4—C11 | 110.53 (12) |
C16—C11—N4 | 110.75 (13) | C18—N4—C19 | 122.84 (12) |
C11—C12—C13 | 117.04 (18) | C11—N4—C19 | 126.64 (12) |
C11—C12—H12 | 121.5 | C22—S2—C20 | 103.51 (7) |
C6—C1—C2—C3 | −0.9 (3) | C5—C4—N1—C10 | 27.1 (2) |
N3—C1—C2—C3 | 179.84 (16) | C3—C4—N1—C7 | −9.1 (2) |
C1—C2—C3—C4 | −0.6 (3) | C5—C4—N1—C7 | 173.37 (14) |
C2—C3—C4—N1 | −175.64 (15) | C9—C10—N1—C4 | −161.47 (12) |
C2—C3—C4—C5 | 2.0 (2) | C9—C10—N1—C7 | 50.45 (17) |
N1—C4—C5—C6 | 175.60 (15) | C8—C7—N1—C4 | 161.00 (13) |
C3—C4—C5—C6 | −2.0 (2) | C8—C7—N1—C10 | −50.81 (18) |
C2—C1—C6—C5 | 0.8 (3) | S1—C22—N2—C9 | 172.05 (12) |
N3—C1—C6—C5 | −179.89 (15) | S2—C22—N2—C9 | −9.64 (19) |
C4—C5—C6—C1 | 0.7 (3) | S1—C22—N2—C8 | −2.8 (2) |
N1—C7—C8—N2 | 55.31 (17) | S2—C22—N2—C8 | 175.50 (11) |
N2—C9—C10—N1 | −54.06 (17) | C10—C9—N2—C22 | −116.39 (16) |
C16—C11—C12—C13 | 0.6 (2) | C10—C9—N2—C8 | 58.99 (17) |
N4—C11—C12—C13 | 177.47 (15) | C7—C8—N2—C22 | 115.48 (15) |
C11—C12—C13—C14 | 0.2 (3) | C7—C8—N2—C9 | −60.14 (16) |
C12—C13—C14—C15 | −0.5 (3) | C6—C1—N3—O2 | 178.82 (19) |
C13—C14—C15—C16 | 0.0 (3) | C2—C1—N3—O2 | −1.9 (3) |
C12—C11—C16—C15 | −1.2 (2) | C6—C1—N3—O1 | −1.1 (3) |
N4—C11—C16—C15 | −178.54 (13) | C2—C1—N3—O1 | 178.16 (17) |
C12—C11—C16—C17 | 175.79 (13) | O4—C18—N4—C11 | 175.30 (14) |
N4—C11—C16—C17 | −1.57 (16) | C17—C18—N4—C11 | −3.55 (14) |
C14—C15—C16—C11 | 0.9 (2) | O4—C18—N4—C19 | −4.8 (2) |
C14—C15—C16—C17 | −175.21 (16) | C17—C18—N4—C19 | 176.33 (12) |
C11—C16—C17—O3 | −178.79 (16) | C12—C11—N4—C18 | −173.73 (14) |
C15—C16—C17—O3 | −2.3 (3) | C16—C11—N4—C18 | 3.40 (16) |
C11—C16—C17—C18 | −0.57 (15) | C12—C11—N4—C19 | 6.4 (2) |
C15—C16—C17—C18 | 175.91 (16) | C16—C11—N4—C19 | −176.48 (13) |
O3—C17—C18—O4 | 2.1 (2) | C20—C19—N4—C18 | −88.55 (15) |
C16—C17—C18—O4 | −176.31 (14) | C20—C19—N4—C11 | 91.31 (16) |
O3—C17—C18—N4 | −179.08 (15) | N2—C22—S2—C20 | 172.63 (10) |
C16—C17—C18—N4 | 2.54 (14) | S1—C22—S2—C20 | −9.02 (10) |
N4—C19—C20—S2 | −66.16 (15) | C19—C20—S2—C22 | −77.72 (12) |
C3—C4—N1—C10 | −155.40 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13···O2i | 0.93 | 2.52 | 3.252 (2) | 136 |
C5—H5···O3ii | 0.93 | 2.33 | 3.125 (2) | 143 |
Symmetry codes: (i) −x+1/2, −y+1/2, −z+1; (ii) x, −y+2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C21H20N4O4S2 |
Mr | 456.53 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 296 |
a, b, c (Å) | 34.4244 (8), 6.8754 (2), 17.9938 (4) |
β (°) | 103.185 (1) |
V (Å3) | 4146.53 (18) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.29 |
Crystal size (mm) | 0.15 × 0.13 × 0.10 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 25340, 5843, 4309 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.700 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.107, 1.03 |
No. of reflections | 5843 |
No. of parameters | 280 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.27, −0.18 |
Computer programs: APEX2 (Bruker, 2007), APEX2 and SAINT (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13···O2i | 0.93 | 2.52 | 3.252 (2) | 136.2 |
C5—H5···O3ii | 0.93 | 2.33 | 3.125 (2) | 143.3 |
Symmetry codes: (i) −x+1/2, −y+1/2, −z+1; (ii) x, −y+2, z+1/2. |
Cg | Cg | Cg···Cg (Å) | sym. code |
Cg1 | Cg2 | 3.534 (5) | x, -y+1, z+0.5 |
Cg1 | Cg3 | 3.797 (5) | x, -y+1, z+0.5 |
* Cg1, Cg2 and Cg3 are the centroids of the C1-C2-C3-C4-C5-C6 (benzene), C11-C16-C17-C18-N4 (pyrrole) and C11-C12-C13-C14-C15-C16 rings, respectively. |
Acknowledgements
This work was supported by the National Natural Science Foundation of China (project No. 20972099) and the Beijing Municipal Commission of Education (project No. KM200710028008).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Dithiocarbamates represent a broad spectrum of biological activities such as fungicidal (Farghaly et al., 1999; Xu et al., 2002; Ozkirimli et al., 2005) and antibacterial effects (Chourasia et al., 1999; Imamura et al., 2001). Dithiocarbamates were also proved to have in vitro and in vivo effective antitumor activities (Cao et al., 2005; Gaspari et al., 2006). In an effort to obtain new and more potent antibacterial and antitumor compounds, we synthesized the title compound, a kind of novel dithiocarbamate derivative. Here, we report the crystal structure of the title compound.
The X-ray crystal analysis shown that the piperazine ring adopts a chair conformation. The indole-2,3-dione ring and the nitrobenzene ring exhibit a dihedral angle of 37.27 (7)° (Fig.1). Considering the molecule with a U shape conformation, two molecules arrange in a face-to-face mode interacting through intermolecular hydrogen bonding (C13—H13···O2i (nitro) = 2.52 Å, D···A 3.252 (2) Å, D—H···A 136.2°). The dimers are further stacked through π–π and C—H···O intermolecular interactions: C5—H5···O3ii (dione) = 2.33 Å (D···A 3.125 (1) Å, D—H···A 143.3°) and the centroid-centroid distance between the C1—C2—C3—C4—C5—C6 (benzene) and C11iii—C16iii—C17iii—C18iii—N4iii (pyrrole) rings is 3.534 (5) Å, and the distance between the C1—C2—C3—C4—C5—C6 (benzene) and C11iii—C12iii—C13iii—C14iii—C15iii—C16iii rings is 3.797 (5) Å. The packing structure is shown along the a axis in Fig.2 [symmetry codes: (i) –x+0.5, -y + 1/2, -z + 1; (ii) x, -y + 2, z + 1/2; (iii) x, -y + 1, z + 1/2].