organic compounds
9-(1,1-Dimethyl-3-oxobutyl)adenine
aKey Laboratory of Tropical Medicinal Plant Chemistry of the Ministry of Education, College of Chemistry & Chemical Engineering, Hainan Normal University, Haikou 571158, People's Republic of China, and bEnvironmental Engineering Department, Environmental Management College of China, Qinhuangdao 066004, People's Republic of China
*Correspondence e-mail: wumingshu@126.com
The title compound, C11H15N5O, crystallizes with two independent molecules in the both of which contain essentially planar imidazole and pyrimidine rings [maximum deviations = 0.002 (2) and 0.026 (2) Å, respectively, for the first molecule, and 0.001 (2) and 0.025 (2) Å for the second]; the dihedral angles between the rings are 2.1 (2) and 1.7 (2)° in the two molecules. The is stabilized by intermolecular N—H⋯N hydrogen bonds, defining chains along a, which are further linked by weak intermolecular π–π contacts [centroid centroid distance = 3.7989 (16) Å] into planes parallel to (01).
Related literature
For the synthesis of the title compound, see: Jiang & Tang (1995). For the biological activity of related compounds, see: Jeffery et al. (2000); Bayes et al. (2003). For related structures, see: Bo et al. (2006); Deng et al. (1995); Wei et al. (2007); Yu et al. (1990).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536810034628/bg2361sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810034628/bg2361Isup2.hkl
The title molecule was prepared according to literature procedure (Jiang et al., 1995). The compound was dissolved in a minimal amount of DMSO and the solution was then placed in a chamber saturated with dichloromethane at room temperature, covered and allowed to crystallize for two weeks. The resulting pale yellow crystals were collected by filtration, and a suitable crystal was selected for structural determination.
All H atoms were placed in calculated positions, with N–H = 0.86 and C—H = 0.93, 0.96 or 0.97 Å, and included in the final cycles of
using a riding model, with Uiso(H) = 1.2Ueq(C).Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. View of the title compound without the hydrogen atom-labeling scheme. Displacement ellipsoids are drawn at the 30% probability level. | |
Fig. 2. A view of the molecular packing along a axis. |
C11H15N5O | Z = 4 |
Mr = 233.28 | F(000) = 496 |
Triclinic, P1 | Dx = 1.274 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.2565 (8) Å | Cell parameters from 1894 reflections |
b = 11.2229 (11) Å | θ = 2.7–24.3° |
c = 13.4021 (13) Å | µ = 0.09 mm−1 |
α = 78.421 (1)° | T = 298 K |
β = 89.551 (2)° | Block, colourless |
γ = 88.483 (1)° | 0.48 × 0.47 × 0.14 mm |
V = 1216.2 (2) Å3 |
Bruker APEXII CCD area-detector diffractometer | 4208 independent reflections |
Radiation source: fine-focus sealed tube | 2538 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
phi and ω scans | θmax = 25.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −9→9 |
Tmin = 0.96, Tmax = 0.99 | k = −13→12 |
6288 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.162 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0626P)2 + 0.3212P] where P = (Fo2 + 2Fc2)/3 |
4208 reflections | (Δ/σ)max < 0.001 |
313 parameters | Δρmax = 0.24 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
C11H15N5O | γ = 88.483 (1)° |
Mr = 233.28 | V = 1216.2 (2) Å3 |
Triclinic, P1 | Z = 4 |
a = 8.2565 (8) Å | Mo Kα radiation |
b = 11.2229 (11) Å | µ = 0.09 mm−1 |
c = 13.4021 (13) Å | T = 298 K |
α = 78.421 (1)° | 0.48 × 0.47 × 0.14 mm |
β = 89.551 (2)° |
Bruker APEXII CCD area-detector diffractometer | 4208 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 2538 reflections with I > 2σ(I) |
Tmin = 0.96, Tmax = 0.99 | Rint = 0.030 |
6288 measured reflections |
R[F2 > 2σ(F2)] = 0.056 | 0 restraints |
wR(F2) = 0.162 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.24 e Å−3 |
4208 reflections | Δρmin = −0.22 e Å−3 |
313 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.2572 (3) | 0.8076 (2) | 0.01198 (17) | 0.0416 (6) | |
N2 | 0.3297 (3) | 0.9315 (2) | 0.11520 (19) | 0.0483 (6) | |
N3 | −0.0300 (3) | 0.7899 (2) | 0.0569 (2) | 0.0498 (7) | |
N4 | −0.1029 (3) | 0.9008 (2) | 0.18776 (19) | 0.0480 (7) | |
N5 | 0.0816 (3) | 1.0018 (2) | 0.26608 (19) | 0.0529 (7) | |
H5A | 0.0059 | 1.0165 | 0.3067 | 0.063* | |
H5B | 0.1776 | 1.0275 | 0.2720 | 0.063* | |
N6 | 0.7455 (3) | 0.2103 (2) | 0.49198 (17) | 0.0410 (6) | |
N7 | 0.8180 (3) | 0.0572 (2) | 0.41366 (18) | 0.0437 (6) | |
N8 | 0.4600 (3) | 0.2330 (2) | 0.44317 (19) | 0.0493 (7) | |
N9 | 0.3889 (3) | 0.0939 (2) | 0.33544 (19) | 0.0471 (6) | |
N10 | 0.5742 (3) | −0.0341 (2) | 0.2781 (2) | 0.0542 (7) | |
H10A | 0.5002 | −0.0547 | 0.2405 | 0.065* | |
H10B | 0.6704 | −0.0653 | 0.2779 | 0.065* | |
O1 | 0.4200 (4) | 0.5832 (2) | 0.1274 (2) | 0.0890 (9) | |
O2 | 0.9215 (3) | 0.3952 (2) | 0.34758 (19) | 0.0747 (7) | |
C1 | 0.3770 (4) | 0.8703 (3) | 0.0464 (2) | 0.0477 (8) | |
H1 | 0.4832 | 0.8695 | 0.0229 | 0.057* | |
C2 | 0.1666 (3) | 0.9074 (2) | 0.1277 (2) | 0.0378 (7) | |
C3 | 0.1211 (3) | 0.8310 (2) | 0.0644 (2) | 0.0386 (7) | |
C4 | −0.1302 (4) | 0.8313 (3) | 0.1201 (3) | 0.0514 (8) | |
H4 | −0.2371 | 0.8082 | 0.1169 | 0.062* | |
C5 | 0.0503 (3) | 0.9394 (3) | 0.1940 (2) | 0.0420 (7) | |
C6 | 0.2743 (4) | 0.7212 (3) | −0.0589 (2) | 0.0478 (8) | |
C7 | 0.2204 (4) | 0.5963 (3) | −0.0013 (2) | 0.0559 (9) | |
H7A | 0.1040 | 0.6009 | 0.0083 | 0.067* | |
H7B | 0.2414 | 0.5381 | −0.0447 | 0.067* | |
C8 | 0.2954 (5) | 0.5463 (3) | 0.1002 (3) | 0.0608 (9) | |
C9 | 0.2085 (5) | 0.4448 (5) | 0.1656 (4) | 0.1136 (18) | |
H9A | 0.2738 | 0.4109 | 0.2239 | 0.170* | |
H9B | 0.1882 | 0.3830 | 0.1274 | 0.170* | |
H9C | 0.1075 | 0.4751 | 0.1878 | 0.170* | |
C10 | 0.1629 (4) | 0.7668 (3) | −0.1489 (2) | 0.0661 (10) | |
H10C | 0.0531 | 0.7699 | −0.1253 | 0.099* | |
H10D | 0.1713 | 0.7126 | −0.1959 | 0.099* | |
H10E | 0.1939 | 0.8467 | −0.1826 | 0.099* | |
C11 | 0.4479 (4) | 0.7178 (3) | −0.0957 (3) | 0.0684 (10) | |
H11A | 0.4784 | 0.7983 | −0.1283 | 0.103* | |
H11B | 0.4575 | 0.6646 | −0.1434 | 0.103* | |
H11C | 0.5179 | 0.6885 | −0.0387 | 0.103* | |
C12 | 0.8644 (4) | 0.1328 (3) | 0.4701 (2) | 0.0452 (7) | |
H12 | 0.9701 | 0.1334 | 0.4934 | 0.054* | |
C13 | 0.6556 (3) | 0.0876 (2) | 0.3974 (2) | 0.0371 (7) | |
C14 | 0.6081 (3) | 0.1810 (2) | 0.4449 (2) | 0.0383 (7) | |
C15 | 0.3592 (4) | 0.1818 (3) | 0.3882 (2) | 0.0510 (8) | |
H15 | 0.2527 | 0.2113 | 0.3860 | 0.061* | |
C16 | 0.5397 (3) | 0.0464 (3) | 0.3364 (2) | 0.0403 (7) | |
C17 | 0.7629 (4) | 0.3162 (3) | 0.5422 (2) | 0.0485 (8) | |
C18 | 0.7157 (4) | 0.4315 (3) | 0.4650 (2) | 0.0544 (9) | |
H18A | 0.6011 | 0.4286 | 0.4506 | 0.065* | |
H18B | 0.7303 | 0.5007 | 0.4970 | 0.065* | |
C19 | 0.8052 (4) | 0.4549 (3) | 0.3652 (3) | 0.0539 (8) | |
C20 | 0.7440 (5) | 0.5588 (4) | 0.2860 (3) | 0.0932 (14) | |
H20A | 0.8196 | 0.5739 | 0.2304 | 0.140* | |
H20B | 0.7319 | 0.6301 | 0.3150 | 0.140* | |
H20C | 0.6409 | 0.5393 | 0.2616 | 0.140* | |
C21 | 0.6479 (5) | 0.3011 (3) | 0.6328 (3) | 0.0689 (10) | |
H21A | 0.5399 | 0.2908 | 0.6106 | 0.103* | |
H21B | 0.6503 | 0.3722 | 0.6624 | 0.103* | |
H21C | 0.6810 | 0.2309 | 0.6826 | 0.103* | |
C22 | 0.9356 (4) | 0.3201 (3) | 0.5801 (3) | 0.0658 (10) | |
H22A | 0.9617 | 0.2457 | 0.6271 | 0.099* | |
H22B | 0.9449 | 0.3875 | 0.6137 | 0.099* | |
H22C | 1.0091 | 0.3296 | 0.5234 | 0.099* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0432 (15) | 0.0402 (14) | 0.0416 (14) | −0.0020 (11) | −0.0024 (11) | −0.0081 (12) |
N2 | 0.0399 (15) | 0.0545 (16) | 0.0540 (16) | −0.0090 (12) | 0.0030 (12) | −0.0182 (14) |
N3 | 0.0428 (15) | 0.0531 (16) | 0.0546 (16) | −0.0070 (13) | −0.0073 (13) | −0.0124 (13) |
N4 | 0.0373 (15) | 0.0555 (16) | 0.0543 (16) | −0.0047 (12) | −0.0040 (12) | −0.0179 (14) |
N5 | 0.0375 (14) | 0.0680 (18) | 0.0615 (18) | −0.0062 (12) | 0.0024 (12) | −0.0322 (15) |
N6 | 0.0405 (14) | 0.0402 (14) | 0.0443 (15) | −0.0105 (11) | −0.0026 (11) | −0.0117 (12) |
N7 | 0.0405 (15) | 0.0447 (15) | 0.0468 (15) | −0.0047 (11) | −0.0044 (11) | −0.0107 (12) |
N8 | 0.0414 (15) | 0.0525 (16) | 0.0564 (17) | −0.0053 (12) | 0.0008 (12) | −0.0162 (13) |
N9 | 0.0362 (14) | 0.0584 (17) | 0.0485 (15) | −0.0103 (12) | 0.0028 (11) | −0.0141 (13) |
N10 | 0.0401 (15) | 0.0626 (17) | 0.0674 (18) | −0.0084 (13) | −0.0063 (13) | −0.0296 (15) |
O1 | 0.105 (2) | 0.0779 (19) | 0.0757 (19) | −0.0019 (17) | −0.0336 (17) | 0.0054 (15) |
O2 | 0.0770 (18) | 0.0712 (17) | 0.0722 (17) | −0.0083 (15) | 0.0210 (14) | −0.0060 (14) |
C1 | 0.0407 (18) | 0.0519 (19) | 0.0516 (19) | −0.0047 (15) | 0.0015 (15) | −0.0127 (16) |
C2 | 0.0346 (16) | 0.0395 (16) | 0.0397 (16) | −0.0041 (13) | −0.0008 (13) | −0.0086 (14) |
C3 | 0.0356 (17) | 0.0368 (16) | 0.0401 (17) | −0.0022 (13) | −0.0043 (13) | 0.0003 (13) |
C4 | 0.0369 (18) | 0.057 (2) | 0.061 (2) | −0.0090 (15) | −0.0038 (16) | −0.0118 (18) |
C5 | 0.0388 (17) | 0.0430 (17) | 0.0443 (18) | −0.0021 (13) | −0.0043 (14) | −0.0090 (15) |
C6 | 0.066 (2) | 0.0417 (18) | 0.0365 (17) | 0.0014 (15) | −0.0023 (15) | −0.0108 (14) |
C7 | 0.072 (2) | 0.0430 (18) | 0.055 (2) | −0.0013 (16) | −0.0081 (17) | −0.0142 (16) |
C8 | 0.071 (2) | 0.050 (2) | 0.057 (2) | 0.0128 (19) | 0.001 (2) | −0.0020 (18) |
C9 | 0.082 (3) | 0.136 (4) | 0.094 (3) | 0.003 (3) | 0.021 (3) | 0.046 (3) |
C10 | 0.090 (3) | 0.064 (2) | 0.044 (2) | 0.001 (2) | −0.0139 (18) | −0.0098 (17) |
C11 | 0.076 (3) | 0.072 (2) | 0.061 (2) | 0.007 (2) | 0.0088 (19) | −0.025 (2) |
C12 | 0.0390 (17) | 0.0495 (18) | 0.0470 (18) | −0.0084 (14) | −0.0061 (14) | −0.0085 (15) |
C13 | 0.0333 (16) | 0.0371 (16) | 0.0392 (16) | −0.0083 (12) | 0.0007 (12) | −0.0023 (13) |
C14 | 0.0366 (17) | 0.0387 (16) | 0.0385 (16) | −0.0105 (13) | 0.0033 (13) | −0.0043 (13) |
C15 | 0.0388 (18) | 0.061 (2) | 0.053 (2) | −0.0028 (15) | 0.0017 (15) | −0.0096 (17) |
C16 | 0.0384 (17) | 0.0437 (17) | 0.0392 (17) | −0.0127 (14) | 0.0050 (13) | −0.0078 (14) |
C17 | 0.055 (2) | 0.0488 (19) | 0.0442 (18) | −0.0177 (15) | 0.0027 (15) | −0.0142 (15) |
C18 | 0.060 (2) | 0.0439 (19) | 0.063 (2) | −0.0120 (16) | 0.0047 (17) | −0.0175 (17) |
C19 | 0.054 (2) | 0.051 (2) | 0.056 (2) | −0.0205 (17) | −0.0019 (17) | −0.0063 (17) |
C20 | 0.086 (3) | 0.108 (3) | 0.073 (3) | −0.002 (3) | −0.013 (2) | 0.012 (3) |
C21 | 0.083 (3) | 0.074 (2) | 0.055 (2) | −0.020 (2) | 0.0121 (19) | −0.0231 (19) |
C22 | 0.071 (2) | 0.065 (2) | 0.066 (2) | −0.0249 (19) | −0.0131 (19) | −0.0202 (19) |
N1—C1 | 1.364 (3) | C7—C8 | 1.495 (5) |
N1—C3 | 1.368 (3) | C7—H7A | 0.9700 |
N1—C6 | 1.491 (3) | C7—H7B | 0.9700 |
N2—C1 | 1.307 (4) | C8—C9 | 1.488 (5) |
N2—C2 | 1.383 (3) | C9—H9A | 0.9600 |
N3—C4 | 1.320 (4) | C9—H9B | 0.9600 |
N3—C3 | 1.353 (3) | C9—H9C | 0.9600 |
N4—C4 | 1.334 (4) | C10—H10C | 0.9600 |
N4—C5 | 1.356 (3) | C10—H10D | 0.9600 |
N5—C5 | 1.333 (3) | C10—H10E | 0.9600 |
N5—H5A | 0.8600 | C11—H11A | 0.9600 |
N5—H5B | 0.8600 | C11—H11B | 0.9600 |
N6—C12 | 1.364 (4) | C11—H11C | 0.9600 |
N6—C14 | 1.382 (3) | C12—H12 | 0.9300 |
N6—C17 | 1.489 (3) | C13—C14 | 1.378 (4) |
N7—C12 | 1.311 (3) | C13—C16 | 1.409 (4) |
N7—C13 | 1.383 (3) | C15—H15 | 0.9300 |
N8—C15 | 1.331 (4) | C17—C21 | 1.520 (4) |
N8—C14 | 1.339 (3) | C17—C22 | 1.522 (4) |
N9—C15 | 1.340 (4) | C17—C18 | 1.530 (4) |
N9—C16 | 1.341 (3) | C18—C19 | 1.502 (5) |
N10—C16 | 1.332 (3) | C18—H18A | 0.9700 |
N10—H10A | 0.8600 | C18—H18B | 0.9700 |
N10—H10B | 0.8600 | C19—C20 | 1.491 (5) |
O1—C8 | 1.205 (4) | C20—H20A | 0.9600 |
O2—C19 | 1.205 (4) | C20—H20B | 0.9600 |
C1—H1 | 0.9300 | C20—H20C | 0.9600 |
C2—C3 | 1.381 (4) | C21—H21A | 0.9600 |
C2—C5 | 1.392 (4) | C21—H21B | 0.9600 |
C4—H4 | 0.9300 | C21—H21C | 0.9600 |
C6—C11 | 1.514 (5) | C22—H22A | 0.9600 |
C6—C10 | 1.519 (4) | C22—H22B | 0.9600 |
C6—C7 | 1.534 (4) | C22—H22C | 0.9600 |
C1—N1—C3 | 105.2 (2) | C6—C10—H10E | 109.5 |
C1—N1—C6 | 127.4 (2) | H10C—C10—H10E | 109.5 |
C3—N1—C6 | 127.1 (2) | H10D—C10—H10E | 109.5 |
C1—N2—C2 | 104.0 (2) | C6—C11—H11A | 109.5 |
C4—N3—C3 | 110.7 (2) | C6—C11—H11B | 109.5 |
C4—N4—C5 | 117.3 (3) | H11A—C11—H11B | 109.5 |
C5—N5—H5A | 120.0 | C6—C11—H11C | 109.5 |
C5—N5—H5B | 120.0 | H11A—C11—H11C | 109.5 |
H5A—N5—H5B | 120.0 | H11B—C11—H11C | 109.5 |
C12—N6—C14 | 105.3 (2) | N7—C12—N6 | 114.8 (2) |
C12—N6—C17 | 127.9 (2) | N7—C12—H12 | 122.6 |
C14—N6—C17 | 126.3 (2) | N6—C12—H12 | 122.6 |
C12—N7—C13 | 103.0 (2) | C14—C13—N7 | 111.5 (2) |
C15—N8—C14 | 110.7 (2) | C14—C13—C16 | 117.1 (3) |
C15—N9—C16 | 118.3 (2) | N7—C13—C16 | 131.2 (3) |
C16—N10—H10A | 120.0 | N8—C14—C13 | 126.6 (3) |
C16—N10—H10B | 120.0 | N8—C14—N6 | 127.9 (2) |
H10A—N10—H10B | 120.0 | C13—C14—N6 | 105.5 (2) |
N2—C1—N1 | 114.3 (3) | N8—C15—N9 | 129.4 (3) |
N2—C1—H1 | 122.9 | N8—C15—H15 | 115.3 |
N1—C1—H1 | 122.9 | N9—C15—H15 | 115.3 |
C3—C2—N2 | 110.0 (2) | N10—C16—N9 | 119.0 (2) |
C3—C2—C5 | 117.7 (3) | N10—C16—C13 | 123.3 (3) |
N2—C2—C5 | 132.2 (2) | N9—C16—C13 | 117.7 (2) |
N3—C3—N1 | 127.9 (3) | N6—C17—C21 | 108.4 (2) |
N3—C3—C2 | 125.6 (3) | N6—C17—C22 | 110.1 (3) |
N1—C3—C2 | 106.5 (2) | C21—C17—C22 | 108.8 (3) |
N3—C4—N4 | 130.4 (3) | N6—C17—C18 | 108.0 (2) |
N3—C4—H4 | 114.8 | C21—C17—C18 | 109.6 (3) |
N4—C4—H4 | 114.8 | C22—C17—C18 | 111.8 (3) |
N5—C5—N4 | 117.8 (3) | C19—C18—C17 | 117.3 (3) |
N5—C5—C2 | 123.9 (3) | C19—C18—H18A | 108.0 |
N4—C5—C2 | 118.2 (2) | C17—C18—H18A | 108.0 |
N1—C6—C11 | 109.7 (2) | C19—C18—H18B | 108.0 |
N1—C6—C10 | 107.7 (2) | C17—C18—H18B | 108.0 |
C11—C6—C10 | 109.7 (3) | H18A—C18—H18B | 107.2 |
N1—C6—C7 | 107.6 (2) | O2—C19—C20 | 119.9 (3) |
C11—C6—C7 | 112.1 (3) | O2—C19—C18 | 123.5 (3) |
C10—C6—C7 | 109.9 (3) | C20—C19—C18 | 116.6 (3) |
C8—C7—C6 | 117.9 (3) | C19—C20—H20A | 109.5 |
C8—C7—H7A | 107.8 | C19—C20—H20B | 109.5 |
C6—C7—H7A | 107.8 | H20A—C20—H20B | 109.5 |
C8—C7—H7B | 107.8 | C19—C20—H20C | 109.5 |
C6—C7—H7B | 107.8 | H20A—C20—H20C | 109.5 |
H7A—C7—H7B | 107.2 | H20B—C20—H20C | 109.5 |
O1—C8—C9 | 121.4 (4) | C17—C21—H21A | 109.5 |
O1—C8—C7 | 122.9 (3) | C17—C21—H21B | 109.5 |
C9—C8—C7 | 115.7 (4) | H21A—C21—H21B | 109.5 |
C8—C9—H9A | 109.5 | C17—C21—H21C | 109.5 |
C8—C9—H9B | 109.5 | H21A—C21—H21C | 109.5 |
H9A—C9—H9B | 109.5 | H21B—C21—H21C | 109.5 |
C8—C9—H9C | 109.5 | C17—C22—H22A | 109.5 |
H9A—C9—H9C | 109.5 | C17—C22—H22B | 109.5 |
H9B—C9—H9C | 109.5 | H22A—C22—H22B | 109.5 |
C6—C10—H10C | 109.5 | C17—C22—H22C | 109.5 |
C6—C10—H10D | 109.5 | H22A—C22—H22C | 109.5 |
H10C—C10—H10D | 109.5 | H22B—C22—H22C | 109.5 |
C2—N2—C1—N1 | 0.2 (3) | C13—N7—C12—N6 | −0.1 (3) |
C3—N1—C1—N2 | −0.3 (3) | C14—N6—C12—N7 | 0.3 (3) |
C6—N1—C1—N2 | −174.2 (3) | C17—N6—C12—N7 | −171.4 (3) |
C1—N2—C2—C3 | 0.0 (3) | C12—N7—C13—C14 | −0.1 (3) |
C1—N2—C2—C5 | 175.5 (3) | C12—N7—C13—C16 | 174.6 (3) |
C4—N3—C3—N1 | 179.6 (3) | C15—N8—C14—C13 | 0.1 (4) |
C4—N3—C3—C2 | −1.0 (4) | C15—N8—C14—N6 | 178.7 (3) |
C1—N1—C3—N3 | 179.7 (3) | N7—C13—C14—N8 | 179.1 (3) |
C6—N1—C3—N3 | −6.4 (5) | C16—C13—C14—N8 | 3.6 (4) |
C1—N1—C3—C2 | 0.2 (3) | N7—C13—C14—N6 | 0.2 (3) |
C6—N1—C3—C2 | 174.2 (2) | C16—C13—C14—N6 | −175.2 (2) |
N2—C2—C3—N3 | −179.6 (3) | C12—N6—C14—N8 | −179.1 (3) |
C5—C2—C3—N3 | 4.2 (4) | C17—N6—C14—N8 | −7.2 (5) |
N2—C2—C3—N1 | −0.1 (3) | C12—N6—C14—C13 | −0.3 (3) |
C5—C2—C3—N1 | −176.4 (2) | C17—N6—C14—C13 | 171.6 (3) |
C3—N3—C4—N4 | −1.9 (5) | C14—N8—C15—N9 | −2.5 (5) |
C5—N4—C4—N3 | 1.4 (5) | C16—N9—C15—N8 | 0.8 (5) |
C4—N4—C5—N5 | −175.5 (3) | C15—N9—C16—N10 | −174.7 (3) |
C4—N4—C5—C2 | 2.1 (4) | C15—N9—C16—C13 | 3.2 (4) |
C3—C2—C5—N5 | 172.9 (3) | C14—C13—C16—N10 | 172.7 (3) |
N2—C2—C5—N5 | −2.3 (5) | N7—C13—C16—N10 | −1.7 (5) |
C3—C2—C5—N4 | −4.5 (4) | C14—C13—C16—N9 | −5.2 (4) |
N2—C2—C5—N4 | −179.8 (3) | N7—C13—C16—N9 | −179.6 (3) |
C1—N1—C6—C11 | −4.0 (4) | C12—N6—C17—C21 | −126.0 (3) |
C3—N1—C6—C11 | −176.7 (3) | C14—N6—C17—C21 | 64.0 (4) |
C1—N1—C6—C10 | −123.4 (3) | C12—N6—C17—C22 | −7.0 (4) |
C3—N1—C6—C10 | 64.0 (4) | C14—N6—C17—C22 | −177.1 (3) |
C1—N1—C6—C7 | 118.2 (3) | C12—N6—C17—C18 | 115.3 (3) |
C3—N1—C6—C7 | −54.5 (4) | C14—N6—C17—C18 | −54.7 (4) |
N1—C6—C7—C8 | −52.1 (4) | N6—C17—C18—C19 | −56.0 (3) |
C11—C6—C7—C8 | 68.6 (4) | C21—C17—C18—C19 | −173.9 (3) |
C10—C6—C7—C8 | −169.1 (3) | C22—C17—C18—C19 | 65.3 (3) |
C6—C7—C8—O1 | −18.3 (5) | C17—C18—C19—O2 | −8.0 (5) |
C6—C7—C8—C9 | 163.2 (3) | C17—C18—C19—C20 | 172.5 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10B···N4i | 0.86 | 2.28 | 3.051 (3) | 149 |
N10—H10A···N2ii | 0.86 | 2.23 | 3.072 (3) | 166 |
N5—H5B···N9iii | 0.86 | 2.16 | 2.988 (3) | 161 |
N5—H5A···N7iv | 0.86 | 2.20 | 3.064 (3) | 178 |
Symmetry codes: (i) x+1, y−1, z; (ii) x, y−1, z; (iii) x, y+1, z; (iv) x−1, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C11H15N5O |
Mr | 233.28 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 8.2565 (8), 11.2229 (11), 13.4021 (13) |
α, β, γ (°) | 78.421 (1), 89.551 (2), 88.483 (1) |
V (Å3) | 1216.2 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.48 × 0.47 × 0.14 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.96, 0.99 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6288, 4208, 2538 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.162, 1.06 |
No. of reflections | 4208 |
No. of parameters | 313 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.24, −0.22 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Mercury (Macrae et al., 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10B···N4i | 0.86 | 2.28 | 3.051 (3) | 148.5 |
N10—H10A···N2ii | 0.86 | 2.23 | 3.072 (3) | 165.8 |
N5—H5B···N9iii | 0.86 | 2.16 | 2.988 (3) | 161.4 |
N5—H5A···N7iv | 0.86 | 2.20 | 3.064 (3) | 178.0 |
Symmetry codes: (i) x+1, y−1, z; (ii) x, y−1, z; (iii) x, y+1, z; (iv) x−1, y+1, z. |
Acknowledgements
This work was supported financially by the Education Department of Hainan Province (hjkj200738). We thank Daqi Wang for collecting the crystal data.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Adenine and adenine derivatives have drawn great attention of biochemists and organic synthetic chemists in recent years because of its good active biologic quality. Especially in the respects of antivirus and restraint of cancer cells(Jeffery et al., 2000). They are found in a variety of biologically active molecules(Bayes et al., 2003). The title compound was a new purine alkaloid, isolated from the mycelium of Ganoderma Capense (Lloyd) Teng obtained by submerged fermentation(Yu et al., 1990). The Ganoderma Gapense (Lloyd) Teng is a famous traditional Chinese medicine, and the content of the title compound was very poor, only 8 × 10-5 from the corresponding mycelium. Herein, we report the synthesis and crystal structure of the title compound.
The title compound crystallizes with two independent but closely similar molecules per asymmetric unit(Fig 1). Both contain nearly planar imidazole and pyrimidine rings are essentially planar, with maximum deviations of 0.002 (2), 0.026 (2), 0.001 (2) and 0.025 (2) Å, respectively. The dihedral angles between imidazole and pyrimidine rings are 2.14 (20) and 1.74 (20)° respectively. The torsion angles C3—N1—C6—C10, C3—N1—C6—C11, C1—N1—C6—C10, C1—N1—C6—C11 and N1—C6—C7—C8 are 64.0 (4), -176.7 (3), -123.4 (3), -4.0 (4) and -52.1 (4)° respectively. The corresponding values of torsion angles for the second distinct conformer are 64.0 (4), -177.1 (3), -126.0 (3), -7.0 (4) and -56.0 (3)° respectively. The bond angles of C1—N1—C3(105.2 (2)°), C3—N1—C6(127.1 (2)°), C1—N1—C6(127.4 (2)°), C14—N6—C17(126.3 (2)°), C12—N6—C14(105.3 (2)°) and C12—N6—C17(127.9 (2)°) are almost 120°, suggesting the N1 and N6 are sp2 instead of traditionally sp3 hybridized with triangular plannar geometry. All bond lengths are normal(Bo et al., 2006).
In the crystal, molecules are linked by intermolecular N–H···N hydrogen-bonds (Table 1) to form an infinite one-dimensional zigzag chain running alomg a (Fig.2), in turn connected by π–π contacts involving the N3—C4, N6—C14 N8—C15 rings, defining two-dimensional layers parallel to (011).