metal-organic compounds
Bis[2-(1H-benzimidazol-2-yl)benzoato]copper(II) dihydrate
aZhongshan Polytechnic, Zhongshan, Guangdong 528404, People's Republic of China
*Correspondence e-mail: wangjun7203@126.com
In the title compound, [Cu(C14H9N2O2)2]·2H2O, the Cu(II) ion lies on a centre of symmetry and is four-coordinated by two N atoms and two O atoms from two 2-(1H-benzimidazol-2-yl)benzoate ligands in a square-planar environment. The benzimidazol and benzyl rings form a dihedral angle of 42.8 (5)°. The molecule contains two H-bonded carboxyl O acceptors and two H-bonded N—H donors in the benzimidazol groups, which interact with two symmetry-related uncoordinated water molecules so that neighboring molecular units are linked by (O—H)water⋯Ocarboxyl hydrogen bonds with an R24(8) graph-set motif, generating a helical chain in the a-axis direction. These chains are, in turn, interconnected by (N—H)benzimidazol⋯Owater hydrogen bonds, forming a three-dimensional supramolecular network.
Related literature
For the structural diversity and potential applications in functional materials of metal coordination polymers based on benzimidazole derivatives, see: Aminabhavi et al. (1986); Isele et al. (2005). For similar structures, see: Che et al. (2006); Fang et al. (2006); Liu et al. (2004); Li et al. (2010). For hydrogen-bond motifs, see: Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b); molecular graphics: XP in SHELXTL (Sheldrick, 2008b); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536810037633/bg2369sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810037633/bg2369Isup2.hkl
The condensation reaction was done by reflux of 1,2-diaminobenzene (1.081 g; 10 mmol), 2-formylbenzoic acid (1.501 g; 10 mmol) and copper acetate (1.99 g; 10 mmol) in a hot 75% methanol/water (3:1; v/v) mixture (50 mL). Blue block crystals of the compound suitable for single-crystal X-ray
were obtained at room temperature by slow evaporation of the solvent (Yield 56% based on Cu).All water H atoms were tentatively located in difference density Fourier maps and were refined with O–H distance restraints of 0.83 (1) Å and with Uiso(H) = 1.5 Ueq(O). In the last stage of
they were treated as riding on their parent O atoms. All H atoms attached to C and N atoms were fixed geometrically and treated as riding with C—H = 0.93 Å and N—H = 0.86 Å, and Uiso(H) = 1.2Ueq(C) and Uiso(H) = 1.5Ueq(N).Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b); molecular graphics: XP in SHELXTL (Sheldrick, 2008b); software used to prepare material for publication: SHELXTL (Sheldrick, 2008b).[Cu(C14H9N2O2)2]·2H2O | F(000) = 590 |
Mr = 574.04 | Dx = 1.466 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4800 reflections |
a = 11.6235 (2) Å | θ = 1.4–28.0° |
b = 7.6920 (2) Å | µ = 0.89 mm−1 |
c = 16.1410 (3) Å | T = 296 K |
β = 115.735 (1)° | Block, blue |
V = 1299.99 (5) Å3 | 0.23 × 0.21 × 0.16 mm |
Z = 2 |
Bruker APEXII CCD area-detector diffractometer | 2974 independent reflections |
Radiation source: fine-focus sealed tube | 1854 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.063 |
ϕ and ω scan | θmax = 27.5°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a) | h = −15→14 |
Tmin = 0.821, Tmax = 0.871 | k = −9→9 |
14480 measured reflections | l = −20→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.110 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0379P)2 + 0.7646P] where P = (Fo2 + 2Fc2)/3 |
2974 reflections | (Δ/σ)max = 0.001 |
178 parameters | Δρmax = 0.29 e Å−3 |
0 restraints | Δρmin = −0.33 e Å−3 |
[Cu(C14H9N2O2)2]·2H2O | V = 1299.99 (5) Å3 |
Mr = 574.04 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.6235 (2) Å | µ = 0.89 mm−1 |
b = 7.6920 (2) Å | T = 296 K |
c = 16.1410 (3) Å | 0.23 × 0.21 × 0.16 mm |
β = 115.735 (1)° |
Bruker APEXII CCD area-detector diffractometer | 2974 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a) | 1854 reflections with I > 2σ(I) |
Tmin = 0.821, Tmax = 0.871 | Rint = 0.063 |
14480 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.110 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.29 e Å−3 |
2974 reflections | Δρmin = −0.33 e Å−3 |
178 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.5000 | 0.5000 | 0.5000 | 0.03258 (17) | |
C1 | 0.5169 (3) | 0.8319 (4) | 0.6049 (2) | 0.0354 (7) | |
C2 | 0.4078 (3) | 0.9168 (4) | 0.5430 (2) | 0.0439 (8) | |
H2 | 0.3519 | 0.8648 | 0.4883 | 0.053* | |
C3 | 0.3861 (4) | 1.0813 (5) | 0.5665 (3) | 0.0511 (9) | |
H3 | 0.3139 | 1.1414 | 0.5265 | 0.061* | |
C4 | 0.4686 (4) | 1.1600 (5) | 0.6478 (3) | 0.0582 (10) | |
H4 | 0.4508 | 1.2721 | 0.6605 | 0.070* | |
C5 | 0.5758 (4) | 1.0775 (5) | 0.7099 (3) | 0.0535 (10) | |
H5 | 0.6302 | 1.1301 | 0.7649 | 0.064* | |
C6 | 0.5994 (3) | 0.9111 (4) | 0.6870 (2) | 0.0400 (8) | |
C7 | 0.6757 (3) | 0.6520 (4) | 0.6772 (2) | 0.0332 (7) | |
C8 | 0.7588 (3) | 0.4981 (4) | 0.7070 (2) | 0.0358 (7) | |
C9 | 0.8024 (3) | 0.4489 (5) | 0.7992 (2) | 0.0504 (9) | |
H9 | 0.7779 | 0.5126 | 0.8378 | 0.060* | |
C10 | 0.8814 (4) | 0.3068 (5) | 0.8332 (3) | 0.0632 (11) | |
H10 | 0.9096 | 0.2750 | 0.8945 | 0.076* | |
C11 | 0.9187 (3) | 0.2119 (5) | 0.7768 (3) | 0.0604 (11) | |
H11 | 0.9700 | 0.1141 | 0.7994 | 0.072* | |
C12 | 0.8798 (3) | 0.2620 (4) | 0.6868 (2) | 0.0502 (9) | |
H12 | 0.9075 | 0.1995 | 0.6495 | 0.060* | |
C13 | 0.7996 (3) | 0.4051 (4) | 0.6504 (2) | 0.0367 (7) | |
C14 | 0.7735 (3) | 0.4580 (4) | 0.5535 (2) | 0.0386 (8) | |
N1 | 0.5679 (2) | 0.6681 (3) | 0.60034 (16) | 0.0327 (6) | |
N2 | 0.6971 (2) | 0.7946 (3) | 0.73035 (17) | 0.0413 (7) | |
H2A | 0.7614 | 0.8103 | 0.7828 | 0.050* | |
O1 | 0.66231 (18) | 0.4956 (3) | 0.49508 (13) | 0.0392 (5) | |
O2 | 0.8661 (2) | 0.4584 (4) | 0.53508 (16) | 0.0636 (8) | |
O1W | 0.8855 (2) | 0.8417 (3) | 0.90275 (15) | 0.0624 (7) | |
H1W | 0.8680 | 0.8979 | 0.9406 | 0.094* | |
H2W | 0.9618 | 0.8657 | 0.9144 | 0.094* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0257 (3) | 0.0338 (3) | 0.0323 (3) | 0.0030 (3) | 0.0070 (2) | −0.0034 (3) |
C1 | 0.0397 (19) | 0.0320 (17) | 0.0387 (18) | −0.0002 (14) | 0.0210 (15) | −0.0016 (15) |
C2 | 0.042 (2) | 0.0385 (19) | 0.049 (2) | 0.0043 (16) | 0.0178 (17) | 0.0018 (17) |
C3 | 0.054 (2) | 0.041 (2) | 0.066 (3) | 0.0104 (19) | 0.034 (2) | 0.0083 (19) |
C4 | 0.074 (3) | 0.033 (2) | 0.087 (3) | 0.0080 (19) | 0.053 (3) | −0.003 (2) |
C5 | 0.064 (3) | 0.042 (2) | 0.061 (2) | −0.0088 (19) | 0.032 (2) | −0.0177 (19) |
C6 | 0.042 (2) | 0.0360 (18) | 0.046 (2) | −0.0016 (16) | 0.0223 (17) | −0.0025 (16) |
C7 | 0.0321 (17) | 0.0363 (18) | 0.0308 (16) | −0.0041 (14) | 0.0132 (14) | −0.0034 (14) |
C8 | 0.0265 (15) | 0.0371 (16) | 0.0371 (17) | −0.0048 (16) | 0.0076 (13) | 0.0013 (16) |
C9 | 0.050 (2) | 0.056 (2) | 0.041 (2) | 0.0050 (17) | 0.0153 (17) | 0.0057 (16) |
C10 | 0.059 (3) | 0.073 (3) | 0.047 (2) | 0.009 (2) | 0.014 (2) | 0.022 (2) |
C11 | 0.051 (2) | 0.059 (2) | 0.066 (3) | 0.023 (2) | 0.021 (2) | 0.029 (2) |
C12 | 0.043 (2) | 0.051 (2) | 0.058 (2) | 0.0089 (17) | 0.0228 (18) | 0.0113 (18) |
C13 | 0.0288 (17) | 0.0374 (18) | 0.0396 (18) | 0.0014 (14) | 0.0109 (14) | 0.0048 (15) |
C14 | 0.0335 (19) | 0.038 (2) | 0.0420 (19) | 0.0006 (14) | 0.0142 (16) | 0.0020 (14) |
N1 | 0.0292 (14) | 0.0314 (14) | 0.0326 (14) | 0.0024 (11) | 0.0089 (11) | −0.0040 (11) |
N2 | 0.0385 (16) | 0.0449 (17) | 0.0335 (14) | −0.0063 (13) | 0.0090 (12) | −0.0094 (13) |
O1 | 0.0296 (12) | 0.0483 (13) | 0.0362 (12) | 0.0045 (11) | 0.0111 (9) | 0.0010 (11) |
O2 | 0.0334 (14) | 0.109 (2) | 0.0530 (15) | 0.0133 (14) | 0.0232 (12) | 0.0240 (14) |
O1W | 0.0453 (15) | 0.0879 (19) | 0.0496 (15) | −0.0167 (14) | 0.0165 (12) | −0.0258 (14) |
Cu1—O1i | 1.9227 (19) | C7—C8 | 1.470 (4) |
Cu1—O1 | 1.9227 (19) | C8—C13 | 1.396 (4) |
Cu1—N1 | 1.951 (2) | C8—C9 | 1.400 (4) |
Cu1—N1i | 1.951 (2) | C9—C10 | 1.379 (5) |
C1—C2 | 1.390 (4) | C9—H9 | 0.9300 |
C1—C6 | 1.395 (4) | C10—C11 | 1.376 (5) |
C1—N1 | 1.407 (4) | C10—H10 | 0.9300 |
C2—C3 | 1.374 (5) | C11—C12 | 1.376 (5) |
C2—H2 | 0.9300 | C11—H11 | 0.9300 |
C3—C4 | 1.384 (5) | C12—C13 | 1.396 (4) |
C3—H3 | 0.9300 | C12—H12 | 0.9300 |
C4—C5 | 1.370 (5) | C13—C14 | 1.513 (4) |
C4—H4 | 0.9300 | C14—O2 | 1.235 (4) |
C5—C6 | 1.392 (5) | C14—O1 | 1.259 (3) |
C5—H5 | 0.9300 | N2—H2A | 0.8600 |
C6—N2 | 1.376 (4) | O1W—H1W | 0.8415 |
C7—N1 | 1.333 (3) | O1W—H2W | 0.8432 |
C7—N2 | 1.347 (3) | ||
O1i—Cu1—O1 | 180.0 | C13—C8—C7 | 124.1 (3) |
O1i—Cu1—N1 | 90.25 (9) | C9—C8—C7 | 116.6 (3) |
O1—Cu1—N1 | 89.75 (9) | C10—C9—C8 | 120.6 (3) |
O1i—Cu1—N1i | 89.75 (9) | C10—C9—H9 | 119.7 |
O1—Cu1—N1i | 90.25 (9) | C8—C9—H9 | 119.7 |
N1—Cu1—N1i | 180.0 | C11—C10—C9 | 120.2 (3) |
C2—C1—C6 | 120.9 (3) | C11—C10—H10 | 119.9 |
C2—C1—N1 | 131.1 (3) | C9—C10—H10 | 119.9 |
C6—C1—N1 | 108.0 (3) | C12—C11—C10 | 119.8 (3) |
C3—C2—C1 | 117.0 (3) | C12—C11—H11 | 120.1 |
C3—C2—H2 | 121.5 | C10—C11—H11 | 120.1 |
C1—C2—H2 | 121.5 | C11—C12—C13 | 121.3 (3) |
C2—C3—C4 | 122.0 (3) | C11—C12—H12 | 119.4 |
C2—C3—H3 | 119.0 | C13—C12—H12 | 119.4 |
C4—C3—H3 | 119.0 | C8—C13—C12 | 118.9 (3) |
C5—C4—C3 | 121.8 (3) | C8—C13—C14 | 124.4 (3) |
C5—C4—H4 | 119.1 | C12—C13—C14 | 116.4 (3) |
C3—C4—H4 | 119.1 | O2—C14—O1 | 122.5 (3) |
C4—C5—C6 | 116.9 (3) | O2—C14—C13 | 116.4 (3) |
C4—C5—H5 | 121.5 | O1—C14—C13 | 121.1 (3) |
C6—C5—H5 | 121.5 | C7—N1—C1 | 106.4 (2) |
N2—C6—C5 | 132.7 (3) | C7—N1—Cu1 | 126.1 (2) |
N2—C6—C1 | 105.9 (3) | C1—N1—Cu1 | 127.5 (2) |
C5—C6—C1 | 121.4 (3) | C7—N2—C6 | 108.8 (3) |
N1—C7—N2 | 110.9 (3) | C7—N2—H2A | 125.6 |
N1—C7—C8 | 126.7 (3) | C6—N2—H2A | 125.6 |
N2—C7—C8 | 122.3 (3) | C14—O1—Cu1 | 132.8 (2) |
C13—C8—C9 | 119.2 (3) | H1W—O1W—H2W | 106.7 |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O1W | 0.86 | 1.86 | 2.716 (3) | 173 |
O1W—H1W···O2ii | 0.84 | 1.89 | 2.720 (3) | 167 |
O1W—H2W···O2iii | 0.84 | 1.94 | 2.763 (3) | 165 |
Symmetry codes: (ii) x, −y+3/2, z+1/2; (iii) −x+2, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C14H9N2O2)2]·2H2O |
Mr | 574.04 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 11.6235 (2), 7.6920 (2), 16.1410 (3) |
β (°) | 115.735 (1) |
V (Å3) | 1299.99 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.89 |
Crystal size (mm) | 0.23 × 0.21 × 0.16 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2008a) |
Tmin, Tmax | 0.821, 0.871 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14480, 2974, 1854 |
Rint | 0.063 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.110, 1.00 |
No. of reflections | 2974 |
No. of parameters | 178 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.33 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008b), SHELXL97 (Sheldrick, 2008b), XP in SHELXTL (Sheldrick, 2008b), SHELXTL (Sheldrick, 2008b).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O1W | 0.86 | 1.86 | 2.716 (3) | 172.6 |
O1W—H1W···O2i | 0.84 | 1.89 | 2.720 (3) | 167.4 |
O1W—H2W···O2ii | 0.84 | 1.94 | 2.763 (3) | 165.4 |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) −x+2, y+1/2, −z+3/2. |
Acknowledgements
This work was supported by Zhongshan Polytechnic.
References
Aminabhavi, T. M., Biradar, N. S., Patil, S. B. & Hoffman, D. E. (1986). Inorg. Chim. Acta, 125, 125–128. CrossRef CAS Web of Science Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bruker (2004). APEX2 and SAINT. Bruker AXS Inc, Madison, Wisconsin, USA. Google Scholar
Che, G.-B., Sun, J., Liu, C.-B. & Xu, Z.-L. (2006). Acta Cryst. E62, m3101–m3103. Web of Science CSD CrossRef IUCr Journals Google Scholar
Fang, X.-N., Xiao, Y.-A., Sui, Y., Chen, H.-M. & Zuo, C.-P. (2006). Acta Cryst. E62, m2519–m2521. Web of Science CSD CrossRef IUCr Journals Google Scholar
Isele, K., Franz, P., Ambrus, C., Bernardinelli, G., Decurtins, S. & Williams, A. F. (2005). Inorg. Chem. 44, 3896–3906. Web of Science CSD CrossRef PubMed CAS Google Scholar
Li, S. L., Lan, Y. Q., Ma, J. C., Ma, J. F. & Su, Z. M. (2010). Cryst. Growth Des. 10, 1161–1170. Web of Science CSD CrossRef CAS Google Scholar
Liu, F. C., Duan, L. Y., Li, Y. G., Wang, E. B., Wang, X. L., Hu, C. W. & Xu, L. (2004). Inorg. Chim. Acta, 357, 1355–1359. Web of Science CSD CrossRef CAS Google Scholar
Sheldrick, G. M. (2008a). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008b). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Metal coordination polymers based on benzimidazole derivatives have raised intense interest for their structural diversity and their potential applications in functional materials (Aminabhavi et al., 1986; Isele et al., 2005). To date, numerous one-, two-, and three-dimensional coordination polymers have been synthesized by the choice of appropriate metal ions and versatile benzimidazole derivatives as ligands (Che et al., 2006; Fang et al., 2006; Liu et al., 2004; Li et al., 2010). Herein, the condensation of 1,2-diaminobenzene with 2-formylbenzoic acid in the presence of copper acetate lead to a new structure, Cu(C14H9N2O2)2.2H2O, the title compound herein reported .
As depicted in Fig. 1, the CuII ion lies on a centre of symmetry and is four-coordinated by two N atoms and two O atoms from two 2-(1H-Benzimidazol-2-yl)benzoate ligands in a square planar environment. The planar benzimidazol and benzyl rings form a dihedral angle of 42.8 (5)°. The molecule contains two H-bonded carboxyl O acceptors and two H-bonded N—H donors in the benzimidazol groups which interact with two symmetry-related lattice water molecules (symmetry code: 2 - X, 2 - Y, 2 - Z) in a way that neighboring molecular units are linked by (O—H)water···Ocarbox hydrogen bonding with an R24(8) graph set motif (Bernstein et al., 1995) to generate a helical chain in the a-axis direction. These chains are in turn interconnected by (N—H)benzimidazol···Owater hydrogen bonds and extend to form a three-dimensional supramolecular network (table 1; Fig. 2)