N-{2-[4-(2-Meth­oxy­phen­yl)piperazin-1-yl]eth­yl}-4-nitro-N-(2-pyrid­yl)benzamide

Lu, C.; Jiang, Q.

doi:10.1107/S1600536810038080

organic compounds

CRYSTALLOGRAPHIC
COMMUNICATIONS

ISSN: 2056-9890

Volume 66| Part 10| October 2010| Page o2697

doi:10.1107/S1600536810038080

Open

access

N-{2-[4-(2-Methoxyphenyl)piperazin-1-yl]ethyl}-4-nitro-N-(2-pyridyl)benzamide

Chunxiong Lu ^a ^* and Quanfu Jiang ^a

^aKey Laboratory of Nuclear Medicine, Ministry of Health, Jiangsu Key Laboratory of Molecular Nuclear Medicine, Jiangsu Institute of Nuclear Medicine, Wuxi 214063, People's Republic of China
^*Correspondence e-mail: luchunxiong@yahoo.com.cn

(Received 10 September 2010; accepted 23 September 2010; online 30 September 2010)

In the title compound, C₂₅H₂₇N₅O₄, the piperizine ring adopts a chair conformation. The dihedral angles between the pyridine ring and the two benzene rings are 65.5 (4) and 70.7 (4)°, while the dihedral angle between the two benzene rings is 17.3 (3)°. An intramolecular C—H⋯O hydrogen bond occurs.

Related literature

For the use of the title compound as a labeling precursor of the serotonin (5-HT_{1 A}) receptor imaging agent,¹⁸F-MPPF, see: Le Bars et al. (1998 ); Zhuang et al. (1994 ).

Experimental

Crystal data

C₂₅H₂₇N₅O₄
M_r = 461.52
Monoclinic, P 2₁ /n
a = 11.480 (2) Å
b = 15.512 (3) Å
c = 13.235 (2) Å
β = 108.505 (3)°
V = 2234.9 (7) Å³
Z = 4
Mo Kα radiation
μ = 0.10 mm⁻¹
T = 103 K
0.50 × 0.50 × 0.33 mm

Data collection

Rigaku SPIDER diffractometer
17307 measured reflections
5066 independent reflections
4318 reflections with I > 2σ(I)
R_int = 0.028

Refinement

R[F² > 2σ(F²)] = 0.041
wR(F²) = 0.098
S = 1.00
5066 reflections
308 parameters
H-atom parameters constrained
Δρ_max = 0.31 e Å⁻³
Δρ_min = −0.17 e Å⁻³

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A	D—H	H⋯A	D⋯A	D—H⋯A
C10—H10A⋯O1	0.99	2.35	2.9536 (18)	119

Data collection: RAPID-AUTO (Rigaku, 2004 ); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supporting information

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810038080/fk2025sup1.cif

Structure factors: contains datablock I. DOI: 10.1107/S1600536810038080/fk2025Isup2.hkl

checkCIF report

Comment top

N-{2-[4-(2-Methoxyphenyl)piperazin-1-yl]ethyl}-4-nitro-N-(2-pyridyl)benzamide, (I), is a labeling precursor of 18F-MPPF, serotonin (5-HT1A) receptor imaging agents (18F-MPPF = 4-(2-methoxyphenyl)-1-[2-(N-2-pyridinyl)-p-18F-fluorobenzamido]ethylpiperazine). We report here the crystal structure of (I). Two phenyl rings and pyridine rings are planar with a maximum deviation of 0.004 (2)Å for atom C1, 0.010 (9)Å for atom C20 and 0.012 (7)Å for atom N4. The dihedral angles between the pyridine ring and the other two phenyl rings are 65.5 (4) and 70.7 (4)°, respectively, while the dihedral angle between the two phenyl rings is 17.3 (3)°. The piperazine ring adopts a chair conformation. Intramolecular C—H···O hydrogen bond could be found in the crystal structure of the title compound.

Related literature top

For the use of the title compound as a labeling precursor of the serotonin (5-HT_{1 A}) receptor imaging agent,¹⁸F-MPPF, see: Le Bars et al. (1998); Zhuang et al. (1994).

Experimental top

The title compound was synthesized according to the method reported in the literature(Zhuang et al.,1994) and crystallized from a mixed solvent composed of ethyl acetate and petroleum ether (1:1); colorless block-shaped crystals were obtained after several days.

Computing details top

Data collection: RAPID-AUTO (Rigaku, 2004); cell refinement: RAPID-AUTO (Rigaku, 2004); data reduction: RAPID-AUTO (Rigaku, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Figures top

Fig. 1. The molecular structure of the title compound, with the atomic numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.

N-{2-[4-(2-Methoxyphenyl)piperazin-1-yl]ethyl}-4-nitro- N-(2-pyridyl)benzamide top

Crystal data top

C₂₅H₂₇N₅O₄	F(000) = 976
M_r = 461.52	D_x = 1.372 Mg m⁻³
Monoclinic, P2₁/n	Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn	Cell parameters from 6374 reflections
a = 11.480 (2) Å	θ = 3.1–27.5°
b = 15.512 (3) Å	µ = 0.10 mm⁻¹
c = 13.235 (2) Å	T = 103 K
β = 108.505 (3)°	Block, yellow
V = 2234.9 (7) Å³	0.50 × 0.50 × 0.33 mm
Z = 4

Data collection top

Rigaku SPIDER diffractometer	4318 reflections with I > 2σ(I)
Radiation source: Rotating Anode	R_int = 0.028
Graphite monochromator	θ_max = 27.5°, θ_min = 3.1°
ω scans	h = −14→14
17307 measured reflections	k = −20→19
5066 independent reflections	l = −13→17

Refinement top

Refinement on F²	Primary atom site location: structure-invariant direct methods
Least-squares matrix: full	Secondary atom site location: difference Fourier map
R[F² > 2σ(F²)] = 0.041	Hydrogen site location: inferred from neighbouring sites
wR(F²) = 0.098	H-atom parameters constrained
S = 1.00	w = 1/[σ²(F_o²) + (0.0465P)² + 0.850P] where P = (F_o² + 2F_c²)/3
5066 reflections	(Δ/σ)_max = 0.001
308 parameters	Δρ_max = 0.31 e Å⁻³
0 restraints	Δρ_min = −0.17 e Å⁻³

Crystal data top

C₂₅H₂₇N₅O₄	V = 2234.9 (7) Å³
M_r = 461.52	Z = 4
Monoclinic, P2₁/n	Mo Kα radiation
a = 11.480 (2) Å	µ = 0.10 mm⁻¹
b = 15.512 (3) Å	T = 103 K
c = 13.235 (2) Å	0.50 × 0.50 × 0.33 mm
β = 108.505 (3)°

Data collection top

Rigaku SPIDER diffractometer	4318 reflections with I > 2σ(I)
17307 measured reflections	R_int = 0.028
5066 independent reflections

Refinement top

R[F² > 2σ(F²)] = 0.041	0 restraints
wR(F²) = 0.098	H-atom parameters constrained
S = 1.00	Δρ_max = 0.31 e Å⁻³
5066 reflections	Δρ_min = −0.17 e Å⁻³
308 parameters

Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F² against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F², conventional R-factors R are based on F, with F set to zero for negative F². The threshold expression of F² > σ(F²) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F² are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å²) top

	x	y	z	U_iso*/U_eq
O1	0.63130 (9)	0.66210 (6)	0.68937 (8)	0.0225 (2)
O2	0.27919 (9)	0.13878 (6)	0.52481 (7)	0.0206 (2)
O3	0.25952 (9)	−0.31358 (6)	0.59155 (8)	0.0251 (2)
O4	0.35176 (10)	−0.30235 (6)	0.47275 (9)	0.0291 (2)
N1	0.53263 (10)	0.53783 (7)	0.77943 (8)	0.0151 (2)
N2	0.44755 (10)	0.36714 (6)	0.70911 (8)	0.0158 (2)
N3	0.39572 (10)	0.12774 (6)	0.69878 (8)	0.0149 (2)
N4	0.57867 (10)	0.05037 (7)	0.73066 (9)	0.0171 (2)
N5	0.30875 (10)	−0.27110 (7)	0.53821 (9)	0.0192 (2)
C1	0.57913 (11)	0.68987 (8)	0.76307 (10)	0.0171 (3)
C2	0.57713 (12)	0.77550 (8)	0.79298 (11)	0.0211 (3)
H2	0.6113	0.8187	0.7600	0.025*
C3	0.52534 (13)	0.79824 (9)	0.87100 (11)	0.0227 (3)
H3	0.5244	0.8569	0.8913	0.027*
C4	0.47553 (13)	0.73621 (9)	0.91885 (11)	0.0220 (3)
H4	0.4405	0.7518	0.9724	0.026*
C5	0.47655 (12)	0.64994 (9)	0.88842 (10)	0.0187 (3)
H5	0.4417	0.6073	0.9217	0.022*
C6	0.52736 (11)	0.62517 (8)	0.81082 (10)	0.0158 (3)
C7	0.51121 (12)	0.47400 (8)	0.85260 (10)	0.0175 (3)
H7A	0.4262	0.4796	0.8549	0.021*
H7B	0.5683	0.4844	0.9253	0.021*
C8	0.53066 (13)	0.38377 (8)	0.81686 (10)	0.0194 (3)
H8A	0.6168	0.3773	0.8179	0.023*
H8B	0.5155	0.3411	0.8669	0.023*
C9	0.47539 (12)	0.42937 (8)	0.63708 (10)	0.0177 (3)
H9A	0.4223	0.4183	0.5631	0.021*
H9B	0.5620	0.4229	0.6396	0.021*
C10	0.45397 (12)	0.52014 (8)	0.66945 (10)	0.0176 (3)
H10A	0.4726	0.5620	0.6202	0.021*
H10B	0.3666	0.5271	0.6645	0.021*
C11	0.45819 (12)	0.27806 (8)	0.67654 (10)	0.0170 (3)
H11A	0.5445	0.2587	0.7063	0.020*
H11B	0.4342	0.2748	0.5979	0.020*
C12	0.37576 (12)	0.21947 (8)	0.71606 (10)	0.0163 (3)
H12A	0.3916	0.2297	0.7931	0.020*
H12B	0.2888	0.2342	0.6785	0.020*
C13	0.49869 (11)	0.08612 (8)	0.77229 (10)	0.0144 (2)
C14	0.51295 (12)	0.08617 (8)	0.88043 (10)	0.0187 (3)
H14	0.4544	0.1134	0.9069	0.022*
C15	0.61517 (13)	0.04521 (9)	0.94863 (11)	0.0222 (3)
H15	0.6285	0.0446	1.0232	0.027*
C16	0.69744 (13)	0.00529 (9)	0.90684 (11)	0.0212 (3)
H16	0.7670	−0.0245	0.9517	0.025*
C17	0.67581 (12)	0.00988 (9)	0.79809 (11)	0.0206 (3)
H17	0.7328	−0.0171	0.7695	0.025*
C18	0.33804 (11)	0.09378 (8)	0.59942 (10)	0.0150 (2)
C19	0.33808 (11)	−0.00235 (8)	0.58734 (10)	0.0145 (3)
C20	0.31415 (12)	−0.05593 (8)	0.66290 (10)	0.0163 (3)
H20	0.3063	−0.0319	0.7265	0.020*
C21	0.30169 (12)	−0.14415 (8)	0.64579 (10)	0.0178 (3)
H21	0.2827	−0.1809	0.6958	0.021*
C22	0.31762 (11)	−0.17711 (8)	0.55421 (10)	0.0163 (3)
C23	0.34266 (12)	−0.12582 (8)	0.47817 (10)	0.0177 (3)
H23	0.3541	−0.1504	0.4163	0.021*
C24	0.35056 (12)	−0.03751 (8)	0.49471 (10)	0.0173 (3)
H24	0.3646	−0.0007	0.4424	0.021*
C25	0.68011 (14)	0.72601 (9)	0.63702 (12)	0.0257 (3)
H25A	0.6140	0.7646	0.5969	0.039*
H25B	0.7169	0.6981	0.5880	0.039*
H25C	0.7430	0.7593	0.6901	0.039*

Atomic displacement parameters (Å²) top

	U¹¹	U²²	U³³	U¹²	U¹³	U²³
O1	0.0285 (5)	0.0173 (5)	0.0263 (5)	−0.0025 (4)	0.0150 (4)	0.0013 (4)
O2	0.0239 (5)	0.0177 (5)	0.0172 (5)	0.0010 (4)	0.0020 (4)	0.0021 (4)
O3	0.0281 (5)	0.0165 (5)	0.0313 (6)	−0.0037 (4)	0.0104 (4)	0.0022 (4)
O4	0.0346 (6)	0.0198 (5)	0.0385 (6)	0.0003 (4)	0.0194 (5)	−0.0083 (4)
N1	0.0191 (5)	0.0111 (5)	0.0137 (5)	−0.0013 (4)	0.0031 (4)	0.0002 (4)
N2	0.0216 (6)	0.0110 (5)	0.0136 (5)	−0.0013 (4)	0.0036 (4)	−0.0009 (4)
N3	0.0176 (5)	0.0110 (5)	0.0154 (5)	0.0004 (4)	0.0041 (4)	−0.0016 (4)
N4	0.0165 (5)	0.0167 (5)	0.0176 (5)	−0.0006 (4)	0.0048 (4)	0.0002 (4)
N5	0.0176 (5)	0.0145 (5)	0.0244 (6)	0.0003 (4)	0.0050 (5)	−0.0013 (4)
C1	0.0161 (6)	0.0169 (6)	0.0164 (6)	−0.0007 (5)	0.0022 (5)	0.0003 (5)
C2	0.0236 (7)	0.0148 (6)	0.0218 (7)	−0.0027 (5)	0.0027 (5)	0.0017 (5)
C3	0.0271 (7)	0.0148 (6)	0.0223 (7)	−0.0007 (5)	0.0022 (6)	−0.0034 (5)
C4	0.0250 (7)	0.0208 (7)	0.0184 (7)	0.0013 (5)	0.0043 (5)	−0.0037 (5)
C5	0.0201 (6)	0.0173 (6)	0.0174 (6)	−0.0013 (5)	0.0042 (5)	0.0000 (5)
C6	0.0152 (6)	0.0131 (6)	0.0159 (6)	−0.0005 (5)	0.0003 (5)	−0.0001 (4)
C7	0.0226 (6)	0.0139 (6)	0.0150 (6)	−0.0024 (5)	0.0045 (5)	−0.0001 (5)
C8	0.0258 (7)	0.0139 (6)	0.0153 (6)	−0.0011 (5)	0.0018 (5)	0.0011 (5)
C9	0.0234 (7)	0.0146 (6)	0.0143 (6)	−0.0011 (5)	0.0047 (5)	−0.0001 (5)
C10	0.0206 (6)	0.0141 (6)	0.0154 (6)	−0.0002 (5)	0.0018 (5)	0.0011 (5)
C11	0.0211 (6)	0.0130 (6)	0.0163 (6)	0.0004 (5)	0.0049 (5)	−0.0013 (5)
C12	0.0194 (6)	0.0117 (6)	0.0175 (6)	0.0016 (5)	0.0051 (5)	−0.0020 (5)
C13	0.0160 (6)	0.0100 (5)	0.0162 (6)	−0.0028 (5)	0.0036 (5)	−0.0010 (4)
C14	0.0225 (6)	0.0175 (6)	0.0169 (6)	−0.0005 (5)	0.0072 (5)	−0.0004 (5)
C15	0.0285 (7)	0.0212 (7)	0.0145 (6)	−0.0022 (6)	0.0036 (5)	0.0008 (5)
C16	0.0201 (6)	0.0164 (6)	0.0226 (7)	−0.0002 (5)	0.0006 (5)	0.0031 (5)
C17	0.0176 (6)	0.0184 (6)	0.0244 (7)	0.0010 (5)	0.0044 (5)	−0.0020 (5)
C18	0.0149 (6)	0.0150 (6)	0.0157 (6)	−0.0009 (5)	0.0055 (5)	−0.0002 (5)
C19	0.0119 (6)	0.0140 (6)	0.0160 (6)	−0.0007 (5)	0.0019 (5)	−0.0012 (5)
C20	0.0175 (6)	0.0175 (6)	0.0141 (6)	−0.0017 (5)	0.0052 (5)	−0.0021 (5)
C21	0.0178 (6)	0.0171 (6)	0.0183 (6)	−0.0029 (5)	0.0054 (5)	0.0020 (5)
C22	0.0142 (6)	0.0126 (6)	0.0208 (6)	−0.0012 (5)	0.0035 (5)	−0.0019 (5)
C23	0.0187 (6)	0.0183 (6)	0.0166 (6)	−0.0015 (5)	0.0064 (5)	−0.0043 (5)
C24	0.0193 (6)	0.0173 (6)	0.0152 (6)	−0.0022 (5)	0.0053 (5)	0.0008 (5)
C25	0.0288 (7)	0.0225 (7)	0.0285 (8)	−0.0060 (6)	0.0128 (6)	0.0041 (6)

Geometric parameters (Å, º) top

O1—C1	1.3662 (16)	C9—C10	1.5145 (18)
O1—C25	1.4223 (16)	C9—H9A	0.9900
O2—C18	1.2228 (15)	C9—H9B	0.9900
O3—N5	1.2268 (15)	C10—H10A	0.9900
O4—N5	1.2251 (15)	C10—H10B	0.9900
N1—C6	1.4240 (16)	C11—C12	1.5196 (18)
N1—C7	1.4594 (16)	C11—H11A	0.9900
N1—C10	1.4747 (16)	C11—H11B	0.9900
N2—C9	1.4616 (16)	C12—H12A	0.9900
N2—C11	1.4641 (16)	C12—H12B	0.9900
N2—C8	1.4652 (16)	C13—C14	1.3879 (18)
N3—C18	1.3758 (16)	C14—C15	1.3867 (19)
N3—C13	1.4250 (15)	C14—H14	0.9500
N3—C12	1.4705 (15)	C15—C16	1.383 (2)
N4—C13	1.3323 (16)	C15—H15	0.9500
N4—C17	1.3426 (17)	C16—C17	1.383 (2)
N5—C22	1.4722 (16)	C16—H16	0.9500
C1—C2	1.3882 (18)	C17—H17	0.9500
C1—C6	1.4137 (18)	C18—C19	1.4997 (17)
C2—C3	1.391 (2)	C19—C24	1.3901 (18)
C2—H2	0.9500	C19—C20	1.3931 (18)
C3—C4	1.372 (2)	C20—C21	1.3870 (18)
C3—H3	0.9500	C20—H20	0.9500
C4—C5	1.3987 (19)	C21—C22	1.3801 (19)
C4—H4	0.9500	C21—H21	0.9500
C5—C6	1.3866 (19)	C22—C23	1.3828 (18)
C5—H5	0.9500	C23—C24	1.3856 (18)
C7—C8	1.5164 (18)	C23—H23	0.9500
C7—H7A	0.9900	C24—H24	0.9500
C7—H7B	0.9900	C25—H25A	0.9800
C8—H8A	0.9900	C25—H25B	0.9800
C8—H8B	0.9900	C25—H25C	0.9800

C1—O1—C25	117.24 (11)	H10A—C10—H10B	108.1
C6—N1—C7	114.85 (10)	N2—C11—C12	110.12 (10)
C6—N1—C10	113.30 (10)	N2—C11—H11A	109.6
C7—N1—C10	110.45 (10)	C12—C11—H11A	109.6
C9—N2—C11	112.05 (10)	N2—C11—H11B	109.6
C9—N2—C8	107.99 (10)	C12—C11—H11B	109.6
C11—N2—C8	111.31 (10)	H11A—C11—H11B	108.2
C18—N3—C13	121.49 (10)	N3—C12—C11	112.36 (10)
C18—N3—C12	117.89 (10)	N3—C12—H12A	109.1
C13—N3—C12	117.95 (10)	C11—C12—H12A	109.1
C13—N4—C17	117.12 (11)	N3—C12—H12B	109.1
O4—N5—O3	123.85 (11)	C11—C12—H12B	109.1
O4—N5—C22	117.94 (11)	H12A—C12—H12B	107.9
O3—N5—C22	118.20 (11)	N4—C13—C14	123.74 (12)
O1—C1—C2	123.77 (12)	N4—C13—N3	115.94 (11)
O1—C1—C6	115.92 (11)	C14—C13—N3	120.30 (11)
C2—C1—C6	120.30 (12)	C15—C14—C13	118.00 (12)
C1—C2—C3	120.27 (13)	C15—C14—H14	121.0
C1—C2—H2	119.9	C13—C14—H14	121.0
C3—C2—H2	119.9	C16—C15—C14	119.28 (13)
C4—C3—C2	120.24 (13)	C16—C15—H15	120.4
C4—C3—H3	119.9	C14—C15—H15	120.4
C2—C3—H3	119.9	C17—C16—C15	118.25 (12)
C3—C4—C5	119.68 (13)	C17—C16—H16	120.9
C3—C4—H4	120.2	C15—C16—H16	120.9
C5—C4—H4	120.2	N4—C17—C16	123.57 (13)
C6—C5—C4	121.48 (13)	N4—C17—H17	118.2
C6—C5—H5	119.3	C16—C17—H17	118.2
C4—C5—H5	119.3	O2—C18—N3	121.88 (11)
C5—C6—C1	118.02 (12)	O2—C18—C19	120.02 (11)
C5—C6—N1	123.12 (11)	N3—C18—C19	117.80 (11)
C1—C6—N1	118.83 (11)	C24—C19—C20	119.87 (12)
N1—C7—C8	110.29 (11)	C24—C19—C18	119.19 (11)
N1—C7—H7A	109.6	C20—C19—C18	120.66 (11)
C8—C7—H7A	109.6	C21—C20—C19	120.34 (12)
N1—C7—H7B	109.6	C21—C20—H20	119.8
C8—C7—H7B	109.6	C19—C20—H20	119.8
H7A—C7—H7B	108.1	C22—C21—C20	118.25 (12)
N2—C8—C7	110.57 (10)	C22—C21—H21	120.9
N2—C8—H8A	109.5	C20—C21—H21	120.9
C7—C8—H8A	109.5	C21—C22—C23	122.82 (12)
N2—C8—H8B	109.5	C21—C22—N5	118.09 (11)
C7—C8—H8B	109.5	C23—C22—N5	119.08 (11)
H8A—C8—H8B	108.1	C22—C23—C24	118.18 (12)
N2—C9—C10	109.93 (10)	C22—C23—H23	120.9
N2—C9—H9A	109.7	C24—C23—H23	120.9
C10—C9—H9A	109.7	C23—C24—C19	120.48 (12)
N2—C9—H9B	109.7	C23—C24—H24	119.8
C10—C9—H9B	109.7	C19—C24—H24	119.8
H9A—C9—H9B	108.2	O1—C25—H25A	109.5
N1—C10—C9	110.41 (10)	O1—C25—H25B	109.5
N1—C10—H10A	109.6	H25A—C25—H25B	109.5
C9—C10—H10A	109.6	O1—C25—H25C	109.5
N1—C10—H10B	109.6	H25A—C25—H25C	109.5
C9—C10—H10B	109.6	H25B—C25—H25C	109.5

C25—O1—C1—C2	−3.46 (18)	C17—N4—C13—N3	−179.26 (11)
C25—O1—C1—C6	177.71 (11)	C18—N3—C13—N4	38.82 (16)
O1—C1—C2—C3	−178.09 (12)	C12—N3—C13—N4	−122.24 (12)
C6—C1—C2—C3	0.69 (19)	C18—N3—C13—C14	−142.72 (12)
C1—C2—C3—C4	−0.2 (2)	C12—N3—C13—C14	56.22 (16)
C2—C3—C4—C5	−0.3 (2)	N4—C13—C14—C15	−1.27 (19)
C3—C4—C5—C6	0.2 (2)	N3—C13—C14—C15	−179.60 (11)
C4—C5—C6—C1	0.29 (19)	C13—C14—C15—C16	−0.83 (19)
C4—C5—C6—N1	178.53 (12)	C14—C15—C16—C17	1.7 (2)
O1—C1—C6—C5	178.13 (11)	C13—N4—C17—C16	−1.38 (19)
C2—C1—C6—C5	−0.74 (18)	C15—C16—C17—N4	−0.6 (2)
O1—C1—C6—N1	−0.19 (16)	C13—N3—C18—O2	−155.72 (12)
C2—C1—C6—N1	−179.06 (11)	C12—N3—C18—O2	5.36 (18)
C7—N1—C6—C5	−15.52 (17)	C13—N3—C18—C19	30.55 (17)
C10—N1—C6—C5	112.69 (14)	C12—N3—C18—C19	−168.37 (10)
C7—N1—C6—C1	162.70 (11)	O2—C18—C19—C24	43.64 (17)
C10—N1—C6—C1	−69.08 (15)	N3—C18—C19—C24	−142.51 (12)
C6—N1—C7—C8	−174.73 (10)	O2—C18—C19—C20	−130.21 (13)
C10—N1—C7—C8	55.64 (13)	N3—C18—C19—C20	43.64 (17)
C9—N2—C8—C7	61.10 (14)	C24—C19—C20—C21	−0.53 (19)
C11—N2—C8—C7	−175.50 (11)	C18—C19—C20—C21	173.28 (11)
N1—C7—C8—N2	−58.92 (14)	C19—C20—C21—C22	2.09 (19)
C11—N2—C9—C10	175.83 (10)	C20—C21—C22—C23	−1.46 (19)
C8—N2—C9—C10	−61.23 (13)	C20—C21—C22—N5	177.83 (11)
C6—N1—C10—C9	173.32 (11)	O4—N5—C22—C21	−162.31 (12)
C7—N1—C10—C9	−56.22 (14)	O3—N5—C22—C21	17.24 (17)
N2—C9—C10—N1	59.47 (14)	O4—N5—C22—C23	17.01 (17)
C9—N2—C11—C12	−153.57 (10)	O3—N5—C22—C23	−163.44 (12)
C8—N2—C11—C12	85.39 (13)	C21—C22—C23—C24	−0.75 (19)
C18—N3—C12—C11	−81.95 (14)	N5—C22—C23—C24	179.97 (11)
C13—N3—C12—C11	79.80 (14)	C22—C23—C24—C19	2.35 (19)
N2—C11—C12—N3	−171.93 (10)	C20—C19—C24—C23	−1.74 (19)
C17—N4—C13—C14	2.34 (18)	C18—C19—C24—C23	−175.64 (11)

Hydrogen-bond geometry (Å, º) top

D—H···A	D—H	H···A	D···A	D—H···A
C10—H10A···O1	0.99	2.35	2.9536 (18)	119

Experimental details

Crystal data
Chemical formula	C₂₅H₂₇N₅O₄
M_r	461.52
Crystal system, space group	Monoclinic, P2₁/n
Temperature (K)	103
a, b, c (Å)	11.480 (2), 15.512 (3), 13.235 (2)
β (°)	108.505 (3)
V (Å³)	2234.9 (7)
Z	4
Radiation type	Mo Kα
µ (mm⁻¹)	0.10
Crystal size (mm)	0.50 × 0.50 × 0.33

Data collection
Diffractometer	Rigaku SPIDER diffractometer
Absorption correction	–
No. of measured, independent and observed [I > 2σ(I)] reflections	17307, 5066, 4318
R_int	0.028
(sin θ/λ)_max (Å⁻¹)	0.649

Refinement
R[F² > 2σ(F²)], wR(F²), S	0.041, 0.098, 1.00
No. of reflections	5066
No. of parameters	308
H-atom treatment	H-atom parameters constrained
Δρ_max, Δρ_min (e Å⁻³)	0.31, −0.17

Computer programs: RAPID-AUTO (Rigaku, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).

Hydrogen-bond geometry (Å, º) top

D—H···A	D—H	H···A	D···A	D—H···A
C10—H10A···O1	0.99	2.35	2.9536 (18)	119

Acknowledgements

This work was supported by the Natural Science Foundation of Jiangsu Province (BK2008112) and the Science Foundation of the Health Department of Jiangsu Province (H200624).

References

Le Bars, D., Lemaire, C., Ginovart, N., Plenevaux, A., Aerts, J., Brihaye, C. & Comar, D. (1998). Nucl. Med. Biol. 25, 343–350. Web of Science CrossRef CAS PubMed Google Scholar
Rigaku (2004). RAPID-AUTO. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Zhuang, Z. P., Kung, M. P. & Kung, H. F. (1994). J. Med. Chem. 37, 1406–1407. CrossRef CAS PubMed Web of Science Google Scholar

This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.

CRYSTALLOGRAPHIC
COMMUNICATIONS

ISSN: 2056-9890

Volume 66| Part 10| October 2010| Page o2697

doi:10.1107/S1600536810038080

Open

access

Format		BIBTeX
		EndNote
		RefMan
		Refer
		Medline
		CIF
		SGML
		Plain Text

Format		BIBTeX
		EndNote
		RefMan
		Refer
		Medline
		CIF
		SGML
		Plain Text

Search IUCr Journals		doi		Advanced search
Author		volume	page

organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

N-{2-[4-(2-Meth­­oxy­phen­yl)piperazin-1-yl]eth­yl}-4-nitro-N-(2-pyrid­yl)benzamide

Related literature

Experimental

Crystal data

Data collection

Refinement

Supporting information

Acknowledgements

References

organic compounds

N-{2-[4-(2-Methoxyphenyl)piperazin-1-yl]ethyl}-4-nitro-N-(2-pyridyl)benzamide