metal-organic compounds
catena-Poly[[(2,9-dimethyl-1,10-phenanthroline-κ2N,N′)cobalt(II)]-μ-malonato-κ4O1,O1′:O3,O3′]
aCenter of Applied Solid State Chemistry Research, Ningbo University, Ningbo 315211, People's Republic of China
*Correspondence e-mail: xuwei@nbu.edu.cn
In the title compound, [Co(C3H2O4)(C14H12N2)]n, the CoII ion is in a distorted octahedral coordination being chelated by a 2,9-dimethyl-1,10-phenanthroline molecule (dmphen) and two carboxylate groups of two malonate ligands The malonate ligand acts in a bridging mode, forming coordination chains along [100]. π–π stacking interactions between dmphen ligands [interplanar distances = 3.414 (4) and 3.447 (4) Å] organize the coordination polymers into supramolecular double chains.
Related literature
For coordination polymers with dicarboxylate ligands, see: Rao et al. (2004); Zheng et al. (2004).
Experimental
Crystal data
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Refinement
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Data collection: RAPID-AUTO (Rigaku, 1998); cell RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536810038043/gk2299sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810038043/gk2299Isup2.hkl
Addition of 2.0 ml (1 M) NaOH to an aqueous solution of CoCl2.6H2O (0.238 g, 1.00 mmol) in 10.0 ml H2O produced a pink precipitate, which was centrifugated and washed with doubly destilled water for several times until no Cl- anions were detectable. The fresh precipitate was then added to a stirred solution of malonic acid (0.104 g, 1.00 mmol) and 2,9-dimethyl-1,10-phenanthroline hydrate (0.226 g, 1 mmol) in CH3OH/H2O (1:1 30 ml). The red mixture was allowed to stand at room temperature and after several days, red plate-like crystals suitable for X-ray analysis were formed. grown by slow evaporation.
All H atoms were placed in geometrically calculated position (C-H = 0.93-0.97 Å) and refined in a riding model approximation with Uiso(H) = 1.2 Ueq(C).
Data collection: RAPID-AUTO (Rigaku, 1998); cell
RAPID-AUTO (Rigaku, 1998); data reduction: RAPID-AUTO (Rigaku, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Co(C3H2O4)(C14H12N2)] | Z = 2 |
Mr = 369.23 | F(000) = 378 |
Triclinic, P1 | Dx = 1.681 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.8767 (14) Å | Cell parameters from 5667 reflections |
b = 9.5293 (19) Å | θ = 3.5–27.5° |
c = 11.149 (2) Å | µ = 1.20 mm−1 |
α = 86.83 (3)° | T = 295 K |
β = 89.53 (3)° | Plate, red |
γ = 89.52 (3)° | 0.33 × 0.11 × 0.07 mm |
V = 729.4 (2) Å3 |
Rigaku R-AXIS RAPID diffractometer | 3309 independent reflections |
Radiation source: fine-focus sealed tube | 2590 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
Detector resolution: 0 pixels mm-1 | θmax = 27.5°, θmin = 3.5° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −12→12 |
Tmin = 0.653, Tmax = 0.782 | l = −14→14 |
7245 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0568P)2 + 0.8449P] where P = (Fo2 + 2Fc2)/3 |
3309 reflections | (Δ/σ)max = 0.015 |
222 parameters | Δρmax = 0.58 e Å−3 |
0 restraints | Δρmin = −0.40 e Å−3 |
[Co(C3H2O4)(C14H12N2)] | γ = 89.52 (3)° |
Mr = 369.23 | V = 729.4 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.8767 (14) Å | Mo Kα radiation |
b = 9.5293 (19) Å | µ = 1.20 mm−1 |
c = 11.149 (2) Å | T = 295 K |
α = 86.83 (3)° | 0.33 × 0.11 × 0.07 mm |
β = 89.53 (3)° |
Rigaku R-AXIS RAPID diffractometer | 3309 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 2590 reflections with I > 2σ(I) |
Tmin = 0.653, Tmax = 0.782 | Rint = 0.032 |
7245 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.58 e Å−3 |
3309 reflections | Δρmin = −0.40 e Å−3 |
222 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Co1 | 0.23932 (7) | 0.27775 (5) | 0.73432 (4) | 0.03063 (16) | |
N1 | 0.2539 (4) | 0.0677 (3) | 0.6805 (2) | 0.0283 (6) | |
N2 | 0.2379 (4) | 0.1661 (3) | 0.9024 (2) | 0.0264 (5) | |
C1 | 0.2526 (5) | 0.0223 (4) | 0.5691 (3) | 0.0346 (7) | |
C2 | 0.2653 (5) | −0.1224 (4) | 0.5494 (4) | 0.0435 (9) | |
H2A | 0.2659 | −0.1521 | 0.4713 | 0.052* | |
C3 | 0.2765 (5) | −0.2181 (4) | 0.6433 (4) | 0.0439 (9) | |
H3A | 0.2860 | −0.3133 | 0.6297 | 0.053* | |
C4 | 0.2737 (5) | −0.1737 (3) | 0.7614 (3) | 0.0347 (7) | |
C5 | 0.2824 (5) | −0.2671 (4) | 0.8659 (4) | 0.0437 (9) | |
H5A | 0.2923 | −0.3633 | 0.8571 | 0.052* | |
C6 | 0.2766 (5) | −0.2182 (4) | 0.9773 (4) | 0.0413 (9) | |
H6A | 0.2831 | −0.2812 | 1.0439 | 0.050* | |
C7 | 0.2604 (5) | −0.0702 (3) | 0.9941 (3) | 0.0322 (7) | |
C8 | 0.2485 (5) | −0.0137 (4) | 1.1072 (3) | 0.0396 (8) | |
H8A | 0.2515 | −0.0724 | 1.1766 | 0.048* | |
C9 | 0.2326 (5) | 0.1280 (4) | 1.1146 (3) | 0.0382 (8) | |
H9A | 0.2249 | 0.1660 | 1.1896 | 0.046* | |
C10 | 0.2276 (5) | 0.2173 (3) | 1.0107 (3) | 0.0312 (7) | |
C11 | 0.2530 (4) | 0.0242 (3) | 0.8937 (3) | 0.0266 (6) | |
C12 | 0.2620 (4) | −0.0274 (3) | 0.7747 (3) | 0.0281 (7) | |
C13 | 0.2325 (6) | 0.1281 (5) | 0.4669 (3) | 0.0461 (9) | |
H13A | 0.1190 | 0.1850 | 0.4789 | 0.069* | |
H13B | 0.2202 | 0.0809 | 0.3935 | 0.069* | |
H13C | 0.3455 | 0.1867 | 0.4623 | 0.069* | |
C14 | 0.2121 (6) | 0.3725 (4) | 1.0190 (3) | 0.0424 (9) | |
H14A | 0.3391 | 0.4104 | 1.0304 | 0.064* | |
H14B | 0.1298 | 0.3933 | 1.0858 | 0.064* | |
H14C | 0.1574 | 0.4137 | 0.9462 | 0.064* | |
O1 | 0.4924 (4) | 0.3945 (4) | 0.7882 (3) | 0.0622 (9) | |
O2 | 0.4560 (5) | 0.3466 (4) | 0.6052 (3) | 0.0675 (9) | |
O3 | 0.9214 (4) | 0.2696 (3) | 0.6983 (3) | 0.0646 (9) | |
O4 | 1.0687 (5) | 0.4640 (4) | 0.7095 (5) | 0.0950 (15) | |
C15 | 0.5528 (5) | 0.4017 (3) | 0.6837 (3) | 0.0331 (7) | |
C16 | 0.7380 (5) | 0.4791 (4) | 0.6502 (3) | 0.0360 (8) | |
H16A | 0.7421 | 0.4975 | 0.5638 | 0.043* | |
H16C | 0.7359 | 0.5691 | 0.6869 | 0.043* | |
C17 | 0.9200 (5) | 0.3999 (4) | 0.6886 (3) | 0.0343 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.0319 (2) | 0.0274 (2) | 0.0321 (3) | −0.00231 (17) | −0.00176 (17) | 0.00297 (17) |
N1 | 0.0266 (13) | 0.0290 (13) | 0.0292 (14) | −0.0007 (11) | 0.0004 (11) | −0.0026 (11) |
N2 | 0.0265 (13) | 0.0237 (12) | 0.0289 (14) | −0.0015 (10) | −0.0022 (10) | −0.0008 (10) |
C1 | 0.0240 (15) | 0.045 (2) | 0.0350 (18) | −0.0042 (14) | 0.0005 (13) | −0.0083 (15) |
C2 | 0.040 (2) | 0.052 (2) | 0.040 (2) | −0.0062 (17) | 0.0002 (16) | −0.0192 (18) |
C3 | 0.0363 (19) | 0.0362 (19) | 0.061 (3) | −0.0042 (16) | −0.0004 (17) | −0.0184 (18) |
C4 | 0.0284 (16) | 0.0271 (16) | 0.049 (2) | −0.0028 (13) | 0.0011 (15) | −0.0025 (15) |
C5 | 0.0397 (19) | 0.0227 (16) | 0.068 (3) | −0.0011 (15) | −0.0021 (18) | 0.0024 (16) |
C6 | 0.0390 (19) | 0.0301 (18) | 0.053 (2) | −0.0029 (15) | −0.0025 (17) | 0.0164 (16) |
C7 | 0.0245 (15) | 0.0318 (17) | 0.0393 (19) | −0.0044 (13) | −0.0043 (13) | 0.0089 (14) |
C8 | 0.0374 (18) | 0.047 (2) | 0.0331 (19) | −0.0060 (16) | −0.0018 (15) | 0.0127 (16) |
C9 | 0.0413 (19) | 0.050 (2) | 0.0238 (17) | −0.0036 (16) | −0.0022 (14) | −0.0013 (15) |
C10 | 0.0293 (16) | 0.0340 (17) | 0.0303 (17) | −0.0014 (14) | −0.0010 (13) | −0.0011 (13) |
C11 | 0.0210 (14) | 0.0272 (15) | 0.0314 (17) | −0.0034 (12) | −0.0024 (12) | 0.0022 (12) |
C12 | 0.0223 (14) | 0.0261 (15) | 0.0360 (18) | −0.0014 (12) | 0.0002 (12) | −0.0006 (13) |
C13 | 0.046 (2) | 0.064 (3) | 0.0282 (19) | −0.0095 (19) | −0.0032 (16) | −0.0023 (17) |
C14 | 0.052 (2) | 0.0385 (19) | 0.037 (2) | 0.0000 (17) | 0.0006 (17) | −0.0080 (16) |
O1 | 0.0481 (16) | 0.097 (3) | 0.0412 (17) | −0.0195 (17) | 0.0000 (13) | 0.0045 (16) |
O2 | 0.063 (2) | 0.083 (2) | 0.059 (2) | −0.0335 (18) | 0.0073 (16) | −0.0249 (18) |
O3 | 0.0481 (17) | 0.0449 (17) | 0.101 (3) | 0.0117 (14) | −0.0200 (17) | −0.0033 (17) |
O4 | 0.0404 (17) | 0.059 (2) | 0.183 (5) | −0.0152 (16) | −0.040 (2) | 0.027 (2) |
C15 | 0.0266 (15) | 0.0300 (16) | 0.042 (2) | 0.0048 (13) | −0.0038 (14) | 0.0032 (14) |
C16 | 0.0349 (17) | 0.0307 (17) | 0.042 (2) | −0.0006 (14) | −0.0031 (15) | 0.0068 (14) |
C17 | 0.0327 (17) | 0.0369 (18) | 0.0327 (18) | 0.0018 (15) | −0.0001 (14) | 0.0021 (14) |
Co1—O1 | 2.180 (3) | C7—C8 | 1.400 (5) |
Co1—O2 | 2.145 (3) | C8—C9 | 1.361 (5) |
Co1—O3i | 2.229 (3) | C8—H8A | 0.9300 |
Co1—O4i | 2.126 (4) | C9—C10 | 1.399 (5) |
Co1—N1 | 2.122 (3) | C9—H9A | 0.9300 |
Co1—N2 | 2.103 (3) | C10—C14 | 1.489 (5) |
Co1—C15 | 2.512 (4) | C11—C12 | 1.440 (5) |
Co1—C17i | 2.519 (3) | C13—H13A | 0.9600 |
N1—C1 | 1.338 (4) | C13—H13B | 0.9600 |
N1—C12 | 1.350 (4) | C13—H13C | 0.9600 |
N2—C10 | 1.328 (4) | C14—H14A | 0.9600 |
N2—C11 | 1.364 (4) | C14—H14B | 0.9600 |
C1—C2 | 1.410 (5) | C14—H14C | 0.9600 |
C1—C13 | 1.485 (5) | O1—C15 | 1.233 (4) |
C2—C3 | 1.352 (6) | O2—C15 | 1.246 (5) |
C2—H2A | 0.9300 | O3—C17 | 1.240 (4) |
C3—C4 | 1.405 (5) | O3—Co1ii | 2.229 (3) |
C3—H3A | 0.9300 | O4—C17 | 1.226 (5) |
C4—C12 | 1.411 (4) | O4—Co1ii | 2.126 (4) |
C4—C5 | 1.428 (5) | C15—C16 | 1.511 (5) |
C5—C6 | 1.350 (6) | C16—C17 | 1.509 (5) |
C5—H5A | 0.9300 | C16—H16A | 0.9700 |
C6—C7 | 1.436 (5) | C16—H16C | 0.9700 |
C6—H6A | 0.9300 | C17—Co1ii | 2.519 (3) |
C7—C11 | 1.398 (4) | ||
N2—Co1—N1 | 79.24 (10) | C9—C8—H8A | 120.3 |
N2—Co1—O4i | 119.53 (16) | C7—C8—H8A | 120.3 |
N1—Co1—O4i | 140.97 (13) | C8—C9—C10 | 120.8 (3) |
N2—Co1—O2 | 136.06 (13) | C8—C9—H9A | 119.6 |
N1—Co1—O2 | 92.45 (12) | C10—C9—H9A | 119.6 |
O4i—Co1—O2 | 93.90 (16) | N2—C10—C9 | 120.9 (3) |
N2—Co1—O1 | 89.80 (11) | N2—C10—C14 | 118.4 (3) |
N1—Co1—O1 | 123.50 (12) | C9—C10—C14 | 120.7 (3) |
O4i—Co1—O1 | 92.30 (13) | N2—C11—C7 | 122.8 (3) |
O2—Co1—O1 | 59.10 (12) | N2—C11—C12 | 117.3 (3) |
N2—Co1—O3i | 97.95 (12) | C7—C11—C12 | 119.9 (3) |
N1—Co1—O3i | 86.71 (11) | N1—C12—C4 | 123.0 (3) |
O4i—Co1—O3i | 58.47 (12) | N1—C12—C11 | 117.8 (3) |
O2—Co1—O3i | 124.82 (14) | C4—C12—C11 | 119.2 (3) |
O1—Co1—O3i | 149.76 (13) | C1—C13—H13A | 109.5 |
C1—N1—C12 | 119.0 (3) | C1—C13—H13B | 109.5 |
C1—N1—Co1 | 128.3 (2) | H13A—C13—H13B | 109.5 |
C12—N1—Co1 | 112.6 (2) | C1—C13—H13C | 109.5 |
C10—N2—C11 | 118.9 (3) | H13A—C13—H13C | 109.5 |
C10—N2—Co1 | 128.1 (2) | H13B—C13—H13C | 109.5 |
C11—N2—Co1 | 113.0 (2) | C10—C14—H14A | 109.5 |
N1—C1—C2 | 120.9 (3) | C10—C14—H14B | 109.5 |
N1—C1—C13 | 118.2 (3) | H14A—C14—H14B | 109.5 |
C2—C1—C13 | 120.9 (3) | C10—C14—H14C | 109.5 |
C3—C2—C1 | 120.4 (3) | H14A—C14—H14C | 109.5 |
C3—C2—H2A | 119.8 | H14B—C14—H14C | 109.5 |
C1—C2—H2A | 119.8 | C15—O1—Co1 | 90.4 (2) |
C2—C3—C4 | 120.0 (3) | C15—O2—Co1 | 91.7 (2) |
C2—C3—H3A | 120.0 | O1—C15—O2 | 118.8 (3) |
C4—C3—H3A | 120.0 | O1—C15—C16 | 120.9 (3) |
C3—C4—C12 | 116.7 (3) | O2—C15—C16 | 120.3 (3) |
C3—C4—C5 | 123.9 (3) | O1—C15—Co1 | 60.2 (2) |
C12—C4—C5 | 119.4 (3) | O2—C15—Co1 | 58.6 (2) |
C6—C5—C4 | 121.2 (3) | C16—C15—Co1 | 178.2 (2) |
C6—C5—H5A | 119.4 | C17—C16—C15 | 113.5 (3) |
C4—C5—H5A | 119.4 | C17—C16—H16A | 108.9 |
C5—C6—C7 | 120.8 (3) | C15—C16—H16A | 108.9 |
C5—C6—H6A | 119.6 | C17—C16—H16C | 108.9 |
C7—C6—H6A | 119.6 | C15—C16—H16C | 108.9 |
C11—C7—C8 | 117.2 (3) | H16A—C16—H16C | 107.7 |
C11—C7—C6 | 119.4 (3) | O4—C17—O3 | 119.4 (4) |
C8—C7—C6 | 123.4 (3) | O4—C17—C16 | 120.1 (3) |
C9—C8—C7 | 119.4 (3) | O3—C17—C16 | 120.5 (3) |
Symmetry codes: (i) x−1, y, z; (ii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | [Co(C3H2O4)(C14H12N2)] |
Mr | 369.23 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 295 |
a, b, c (Å) | 6.8767 (14), 9.5293 (19), 11.149 (2) |
α, β, γ (°) | 86.83 (3), 89.53 (3), 89.52 (3) |
V (Å3) | 729.4 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.20 |
Crystal size (mm) | 0.33 × 0.11 × 0.07 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.653, 0.782 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7245, 3309, 2590 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.127, 1.06 |
No. of reflections | 3309 |
No. of parameters | 222 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.58, −0.40 |
Computer programs: RAPID-AUTO (Rigaku, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Co1—O1 | 2.180 (3) | Co1—O4i | 2.126 (4) |
Co1—O2 | 2.145 (3) | Co1—N1 | 2.122 (3) |
Co1—O3i | 2.229 (3) | Co1—N2 | 2.103 (3) |
Symmetry code: (i) x−1, y, z. |
Acknowledgements
This project was sponsored by the K. C. Wong Magna Fund in Ningbo University and the Scientific Research Fund of Ningbo University (grant No. XYL09078).
References
Higashi, T. (1995). ABSCOR. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rao, C. N. R., Natarajan, S. & Vaidhyanathan, R. (2004). Angew. Chem. Int. Ed. 43, 1466–1496. Web of Science CrossRef CAS Google Scholar
Rigaku (1998). RAPID-AUTO. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Zheng, Y.-Q., Lin, J.-L. & Kong, Z.-P. (2004). Inorg. Chem. 43, 2590–2596. Web of Science CSD CrossRef PubMed CAS Google Scholar
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Metal-phenanthroline complexes and their derivatives have attracted much attention because of their peculiar features. In turn dicarboxylate ligands play an important role in modern coordination chemistry and many complexes have been published with them as ligands (Rao et al., 2004; Zheng et al., 2004). The title complex, (I), was recently prepared and its crystal structure is reported here.
The crystal structure of the title compound consists of [Co(C14H12N2)(C3H2O4)]n chains (Fig. 1). Each Co atom is surrounded by two nitrogen atoms of one 2,9-dimethyl-1,10-phenanthroline ligand and four oxygen atoms of two bis-chelating malonate anions to complete a seriously distorted octahedral coordination (Table 1). The malonate ligands bridge the Co atoms to form neutral one-dimensional chains [Co(C14H12N2)(C3H2O4)]n along [100] with parallel orientated phen ligands at the same side. As shown in Fig. 2, through π-π stacking interactions the dmphen ligands of two adjacent coordination chains form supramolecular double chains. The interplanar distances between the neighbouring dmphen ligands are 3.414 (4) and 3.447 (4) Å.