metal-organic compounds
[μ-N,N,N′,N′-Tetrakis(2-pyridylmethyl)pentane-1,5-diamine]bis[dichloridocopper(II)] sesquihydrate
aDepartment of Chemistry, Syracuse University, Syracuse, New York 13244, USA
*Correspondence e-mail: jazubiet@syr.edu
In the title dinuclear copper complex, [Cu2Cl4(C29H34N6)]·1.5H2O, both CuII ions are coordinated in a slightly distorted square-pyramidal environment in which the N atoms of the dipicolylamine group and a chloride ligand form the basal plane. The apical position is occupied by a second chloride atom. The Cu—N distances involving the pyridine N atoms differ slightly from each other and the Cu—N distance involving the tertiary N atom is the longest. The apical Cu—Cl distance is elongated compared to its basal counterpart due to typical Jahn–Teller distortion. In the complex and water molecules are linked via intermolecular O—H⋯O and O—H⋯Cl hydrogen bonds into chains along [001]. One of the water molecules was refined with half occupancy.
Related literature
For crystallographic data of tetrakis(pyridin-2-yl-methyl)alkyl-diamines, see: Fujihara et al. (2004); Mambanda et al. (2007). For the superoxide dismutase activity of iron complexes, see: Tamura et al. (2000). For dinuclear Pt complexes of similar ligands, see: Ertürk et al. (2007). For the use of the dipicolylamine moiety for binding of the M(CO)3 core (M = Re, 99mTc), see: Bartholomä et al. (2009). For crystal structures closely related to the title compound, see: Bartholomä et al. (2010a,b,c,d).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2002); cell SAINT (Bruker, 2002); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
10.1107/S1600536810034513/lh5109sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810034513/lh5109Isup2.hkl
N1,N1,N5,N5-tetrakis(pyridin-2-ylmethyl)pentane-1,5-diamine. An amount of 1.00 g (9.78 mmol) 1,5-diaminopentane was dissolved in 30 ml anhydrous dichloroethane under an inert atmosphere (argon) followed by the addition of 3.91 ml (41.10 mmol) pyridine-2-carboxaldehyde. The mixture was stirred for 15 min at r.t. and then cooled with an ice bath prior to the portionwise addition of 12.44 g (58.72 mmol) sodium triacetoxyborohydride (gas evolution, exothermic reaction). The reaction was stirred overnight allowing the temperature slowly to rise to room temperature. The reaction was quenched by the dropwise addition of saturated sodium bicarbonate solution and stirring was continued until the gas evolution ceased. The mixture was separated and the organic layer was further washed with saturated sodium bicarbonate solution, water and brine. The organic phase was dried with anhydrous sodium sulfate, filtered and the solvent removed under reduced pressure. The crude reaction mixture was then purified by silica gel δ = 8.39 (m, 4H), 7.49 (m, 4H), 7.37 (d, J = 7.81 Hz, 4H), 6.95 (m, 4H), 3.64 (s, 8H), 2.36 (m, 4H), 1.33 (m, 4H), 1.07 (m, 2H) p.p.m..
starting with chloroform and increasing gradient to chloroform:methanol 10:1 (v/v). Yield: 4.02 g (86%). 1H NMR (CDCl3):Synthesis of metal complex. To 2 ml of an aqueous solution of copper chloride, two equivalents (50 mg, 0.11 mmol) of N1,N1,N5,N5-tetrakis(pyridin-2-ylmethyl)pentane-1,5-diamine in 2 ml methanol were added followed by the addition of 2 ml N,N-dimethylformamide. Single crystals were obtained after a week by slow evaporation of the solvents at room temperature.
All the H atoms were placed in idealized positions and refined by the riding model approximation with C—Haryl = 0.95 Å, C—Hmethyl = 0.98Å and C—Hmethylene = 0.99Åand Uiso(H) = 1.5Ueq(Cmethyl) and 1.2Ueq(Cmethylene/aryl). Water hydrogen atoms were initially located in the difference Fourier map but were then refined with O—H = 0.84 (2) Å and Uiso(H) = 1.5 Ueq(O).
Data collection: SMART (Bruker, 2002); cell
SAINT (Bruker, 2002); data reduction: SAINT (Bruker, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title complex. The displacement ellipsoids are drawn at 50% probability level. solvent water molecules and hydrogen atoms are omitted for clarity. |
[Cu2Cl4(C29H34N6)]·1.5H2O | F(000) = 1564 |
Mr = 762.55 | Dx = 1.561 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 6480 reflections |
a = 8.2003 (13) Å | θ = 5.3–56.1° |
b = 14.3700 (16) Å | µ = 1.68 mm−1 |
c = 27.688 (4) Å | T = 90 K |
β = 97.919 (6)° | Neeldes, blue |
V = 3231.6 (8) Å3 | 0.22 × 0.16 × 0.12 mm |
Z = 4 |
Bruker APEX CCD diffractometer | 7827 independent reflections |
Radiation source: fine-focus sealed tube | 7421 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.050 |
Detector resolution: 512 pixels mm-1 | θmax = 28.1°, θmin = 1.6° |
ϕ and ω scans | h = −10→10 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −18→18 |
Tmin = 0.709, Tmax = 0.824 | l = −36→35 |
31227 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.079 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.156 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.40 | w = 1/[σ2(Fo2) + (0.0289P)2 + 16.2006P] where P = (Fo2 + 2Fc2)/3 |
7827 reflections | (Δ/σ)max = 0.003 |
404 parameters | Δρmax = 0.81 e Å−3 |
5 restraints | Δρmin = −0.67 e Å−3 |
[Cu2Cl4(C29H34N6)]·1.5H2O | V = 3231.6 (8) Å3 |
Mr = 762.55 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.2003 (13) Å | µ = 1.68 mm−1 |
b = 14.3700 (16) Å | T = 90 K |
c = 27.688 (4) Å | 0.22 × 0.16 × 0.12 mm |
β = 97.919 (6)° |
Bruker APEX CCD diffractometer | 7827 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 7421 reflections with I > 2σ(I) |
Tmin = 0.709, Tmax = 0.824 | Rint = 0.050 |
31227 measured reflections |
R[F2 > 2σ(F2)] = 0.079 | 5 restraints |
wR(F2) = 0.156 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.40 | w = 1/[σ2(Fo2) + (0.0289P)2 + 16.2006P] where P = (Fo2 + 2Fc2)/3 |
7827 reflections | Δρmax = 0.81 e Å−3 |
404 parameters | Δρmin = −0.67 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cu1 | 0.27113 (7) | 0.72996 (4) | 1.01183 (2) | 0.01076 (13) | |
Cu2 | 0.27749 (7) | 0.33032 (4) | 0.71531 (2) | 0.01413 (14) | |
Cl1 | 0.18034 (14) | 0.87113 (8) | 1.05552 (4) | 0.0141 (2) | |
Cl2 | 0.37112 (16) | 0.61583 (9) | 1.06521 (5) | 0.0213 (3) | |
Cl3 | 0.41385 (17) | 0.36546 (10) | 0.65260 (5) | 0.0258 (3) | |
Cl4 | 0.10401 (16) | 0.18600 (9) | 0.69447 (5) | 0.0215 (3) | |
O1 | 0.2269 (9) | 0.9799 (4) | 0.6606 (2) | 0.0570 (16) | |
O2 | 0.9605 (10) | 0.2886 (6) | 0.8770 (3) | 0.0253 (17) | 0.50 |
N1 | 0.4863 (5) | 0.7920 (3) | 1.00962 (14) | 0.0113 (8) | |
N2 | 0.2270 (5) | 0.7828 (3) | 0.94143 (14) | 0.0114 (8) | |
N3 | 0.0433 (5) | 0.6801 (3) | 0.99475 (15) | 0.0120 (8) | |
N4 | 0.4603 (5) | 0.2609 (3) | 0.75526 (15) | 0.0159 (8) | |
N5 | 0.2081 (5) | 0.3520 (3) | 0.78308 (15) | 0.0132 (8) | |
N6 | 0.0870 (5) | 0.4163 (3) | 0.69621 (15) | 0.0168 (9) | |
C1 | 0.3151 (6) | 0.8723 (3) | 0.94483 (17) | 0.0114 (9) | |
H1A | 0.2495 | 0.9199 | 0.9594 | 0.014* | |
H1B | 0.3315 | 0.8937 | 0.9118 | 0.014* | |
C2 | 0.4794 (6) | 0.8601 (3) | 0.97598 (17) | 0.0140 (9) | |
C3 | 0.6144 (6) | 0.9175 (3) | 0.97175 (19) | 0.0158 (10) | |
H3 | 0.6075 | 0.9657 | 0.9480 | 0.019* | |
C4 | 0.7587 (6) | 0.9022 (4) | 1.0032 (2) | 0.0190 (11) | |
H4 | 0.8526 | 0.9401 | 1.0012 | 0.023* | |
C5 | 0.7659 (6) | 0.8316 (4) | 1.03749 (19) | 0.0180 (10) | |
H5 | 0.8642 | 0.8201 | 1.0591 | 0.022* | |
C6 | 0.6271 (6) | 0.7785 (3) | 1.03951 (18) | 0.0156 (9) | |
H6 | 0.6314 | 0.7302 | 1.0631 | 0.019* | |
C7 | 0.0454 (6) | 0.7921 (3) | 0.92979 (17) | 0.0131 (9) | |
H7A | 0.0132 | 0.7887 | 0.8940 | 0.016* | |
H7B | 0.0108 | 0.8535 | 0.9411 | 0.016* | |
C8 | −0.0398 (6) | 0.7164 (3) | 0.95395 (17) | 0.0132 (9) | |
C9 | −0.1994 (6) | 0.6872 (3) | 0.93578 (17) | 0.0141 (9) | |
H9 | −0.2557 | 0.7132 | 0.9066 | 0.017* | |
C10 | −0.2733 (6) | 0.6204 (3) | 0.96078 (19) | 0.0169 (10) | |
H10 | −0.3812 | 0.5992 | 0.9490 | 0.020* | |
C11 | −0.1882 (6) | 0.5841 (4) | 1.0036 (2) | 0.0199 (11) | |
H11 | −0.2382 | 0.5388 | 1.0218 | 0.024* | |
C12 | −0.0301 (6) | 0.6148 (3) | 1.01933 (19) | 0.0175 (10) | |
H12 | 0.0286 | 0.5892 | 1.0483 | 0.021* | |
C13 | 0.2943 (6) | 0.7235 (3) | 0.90419 (17) | 0.0128 (9) | |
H13A | 0.4160 | 0.7265 | 0.9103 | 0.015* | |
H13B | 0.2590 | 0.7506 | 0.8716 | 0.015* | |
C14 | 0.2430 (6) | 0.6220 (3) | 0.90307 (16) | 0.0129 (9) | |
H14A | 0.1215 | 0.6173 | 0.8992 | 0.016* | |
H14B | 0.2880 | 0.5915 | 0.9341 | 0.016* | |
C15 | 0.3081 (6) | 0.5735 (4) | 0.86064 (19) | 0.0172 (10) | |
H15A | 0.4298 | 0.5711 | 0.8673 | 0.021* | |
H15B | 0.2780 | 0.6109 | 0.8307 | 0.021* | |
C16 | 0.2422 (6) | 0.4749 (3) | 0.85142 (18) | 0.0165 (10) | |
H16A | 0.1211 | 0.4746 | 0.8504 | 0.020* | |
H16B | 0.2902 | 0.4334 | 0.8782 | 0.020* | |
C17 | 0.2879 (6) | 0.4396 (3) | 0.80292 (17) | 0.0147 (9) | |
H17A | 0.2611 | 0.4891 | 0.7783 | 0.018* | |
H17B | 0.4086 | 0.4303 | 0.8069 | 0.018* | |
C18 | 0.2662 (6) | 0.2696 (3) | 0.81311 (18) | 0.0161 (10) | |
H18A | 0.1872 | 0.2176 | 0.8061 | 0.019* | |
H18B | 0.2738 | 0.2851 | 0.8482 | 0.019* | |
C19 | 0.4314 (6) | 0.2415 (3) | 0.80118 (18) | 0.0155 (9) | |
C20 | 0.5471 (7) | 0.1945 (4) | 0.8336 (2) | 0.0222 (11) | |
H20 | 0.5277 | 0.1838 | 0.8662 | 0.027* | |
C21 | 0.6906 (7) | 0.1636 (4) | 0.8181 (2) | 0.0268 (12) | |
H21 | 0.7702 | 0.1306 | 0.8397 | 0.032* | |
C22 | 0.7170 (7) | 0.1812 (4) | 0.7709 (2) | 0.0218 (11) | |
H22 | 0.8136 | 0.1590 | 0.7593 | 0.026* | |
C23 | 0.6002 (7) | 0.2317 (4) | 0.74057 (19) | 0.0207 (11) | |
H23 | 0.6204 | 0.2460 | 0.7084 | 0.025* | |
C24 | 0.0260 (6) | 0.3601 (4) | 0.77349 (19) | 0.0181 (10) | |
H24A | −0.0155 | 0.3899 | 0.8017 | 0.022* | |
H24B | −0.0239 | 0.2974 | 0.7689 | 0.022* | |
C25 | −0.0214 (6) | 0.4176 (4) | 0.72845 (19) | 0.0192 (10) | |
C26 | −0.1696 (7) | 0.4657 (4) | 0.7199 (2) | 0.0241 (12) | |
H26 | −0.2452 | 0.4649 | 0.7430 | 0.029* | |
C27 | −0.2036 (7) | 0.5149 (4) | 0.6766 (2) | 0.0301 (14) | |
H27 | −0.3053 | 0.5470 | 0.6692 | 0.036* | |
C28 | −0.0899 (8) | 0.5172 (4) | 0.6444 (2) | 0.0274 (13) | |
H28 | −0.1099 | 0.5527 | 0.6152 | 0.033* | |
C29 | 0.0536 (7) | 0.4668 (4) | 0.6552 (2) | 0.0225 (11) | |
H29 | 0.1318 | 0.4680 | 0.6329 | 0.027* | |
H1WA | 0.208 (14) | 1.035 (3) | 0.668 (4) | 0.10 (4)* | |
H1WB | 0.266 (9) | 0.972 (6) | 0.6345 (17) | 0.05 (2)* | |
H2WA | 0.889 (10) | 0.330 (5) | 0.871 (5) | 0.04 (4)* | 0.50 |
H2WB | 0.904 (10) | 0.242 (4) | 0.882 (4) | 0.02 (3)* | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0096 (3) | 0.0114 (3) | 0.0112 (3) | −0.0016 (2) | 0.0012 (2) | 0.0018 (2) |
Cu2 | 0.0172 (3) | 0.0144 (3) | 0.0109 (3) | 0.0015 (2) | 0.0023 (2) | −0.0014 (2) |
Cl1 | 0.0143 (5) | 0.0144 (5) | 0.0144 (5) | −0.0022 (4) | 0.0044 (4) | −0.0035 (4) |
Cl2 | 0.0212 (6) | 0.0173 (6) | 0.0238 (6) | −0.0021 (5) | −0.0028 (5) | 0.0082 (5) |
Cl3 | 0.0299 (7) | 0.0301 (7) | 0.0190 (6) | 0.0026 (6) | 0.0094 (5) | 0.0040 (5) |
Cl4 | 0.0265 (6) | 0.0175 (6) | 0.0198 (6) | −0.0050 (5) | 0.0003 (5) | −0.0031 (5) |
O1 | 0.085 (4) | 0.037 (3) | 0.060 (4) | −0.001 (3) | 0.052 (3) | −0.002 (3) |
O2 | 0.023 (4) | 0.025 (4) | 0.028 (4) | −0.002 (3) | 0.006 (3) | 0.005 (3) |
N1 | 0.0084 (17) | 0.0120 (19) | 0.0145 (19) | 0.0006 (14) | 0.0053 (14) | −0.0030 (15) |
N2 | 0.0122 (18) | 0.0108 (19) | 0.0111 (18) | −0.0029 (15) | 0.0020 (14) | −0.0013 (14) |
N3 | 0.0131 (18) | 0.0085 (18) | 0.0154 (19) | −0.0025 (14) | 0.0052 (15) | −0.0003 (15) |
N4 | 0.016 (2) | 0.014 (2) | 0.018 (2) | −0.0005 (16) | 0.0032 (16) | −0.0031 (16) |
N5 | 0.0125 (19) | 0.013 (2) | 0.0141 (19) | 0.0033 (15) | 0.0028 (15) | 0.0014 (15) |
N6 | 0.019 (2) | 0.018 (2) | 0.013 (2) | −0.0027 (17) | −0.0012 (16) | −0.0039 (16) |
C1 | 0.014 (2) | 0.009 (2) | 0.012 (2) | −0.0028 (17) | 0.0033 (17) | −0.0009 (16) |
C2 | 0.015 (2) | 0.014 (2) | 0.014 (2) | −0.0013 (18) | 0.0048 (18) | −0.0079 (18) |
C3 | 0.016 (2) | 0.011 (2) | 0.023 (3) | −0.0052 (18) | 0.0107 (19) | −0.0044 (19) |
C4 | 0.014 (2) | 0.016 (2) | 0.029 (3) | −0.0032 (19) | 0.009 (2) | −0.015 (2) |
C5 | 0.008 (2) | 0.025 (3) | 0.021 (2) | 0.0015 (19) | 0.0016 (18) | −0.011 (2) |
C6 | 0.016 (2) | 0.015 (2) | 0.016 (2) | 0.0001 (18) | 0.0032 (18) | −0.0042 (18) |
C7 | 0.012 (2) | 0.014 (2) | 0.013 (2) | 0.0003 (17) | 0.0014 (17) | −0.0003 (17) |
C8 | 0.017 (2) | 0.009 (2) | 0.015 (2) | 0.0028 (17) | 0.0069 (18) | −0.0032 (17) |
C9 | 0.013 (2) | 0.016 (2) | 0.013 (2) | 0.0010 (18) | 0.0013 (17) | −0.0034 (18) |
C10 | 0.015 (2) | 0.014 (2) | 0.022 (3) | 0.0006 (18) | 0.0024 (19) | −0.0023 (19) |
C11 | 0.017 (2) | 0.014 (2) | 0.031 (3) | −0.0026 (19) | 0.011 (2) | 0.004 (2) |
C12 | 0.020 (2) | 0.014 (2) | 0.019 (2) | 0.0021 (19) | 0.0026 (19) | 0.0045 (19) |
C13 | 0.013 (2) | 0.013 (2) | 0.013 (2) | −0.0025 (17) | 0.0019 (17) | −0.0034 (17) |
C14 | 0.018 (2) | 0.014 (2) | 0.008 (2) | −0.0015 (18) | 0.0043 (17) | −0.0011 (17) |
C15 | 0.019 (2) | 0.016 (2) | 0.018 (2) | −0.0020 (19) | 0.0085 (19) | −0.0039 (19) |
C16 | 0.023 (3) | 0.014 (2) | 0.013 (2) | −0.0006 (19) | 0.0070 (19) | −0.0024 (18) |
C17 | 0.017 (2) | 0.015 (2) | 0.011 (2) | −0.0003 (18) | 0.0002 (18) | −0.0008 (18) |
C18 | 0.024 (2) | 0.011 (2) | 0.014 (2) | 0.0023 (19) | 0.0052 (19) | 0.0036 (18) |
C19 | 0.022 (2) | 0.010 (2) | 0.015 (2) | 0.0001 (18) | 0.0014 (19) | −0.0010 (18) |
C20 | 0.030 (3) | 0.019 (3) | 0.017 (2) | 0.003 (2) | 0.000 (2) | 0.001 (2) |
C21 | 0.026 (3) | 0.025 (3) | 0.027 (3) | 0.008 (2) | −0.004 (2) | 0.001 (2) |
C22 | 0.018 (2) | 0.019 (3) | 0.028 (3) | 0.001 (2) | 0.003 (2) | −0.009 (2) |
C23 | 0.024 (3) | 0.021 (3) | 0.018 (2) | −0.004 (2) | 0.007 (2) | −0.008 (2) |
C24 | 0.015 (2) | 0.018 (2) | 0.021 (3) | 0.0002 (19) | 0.0017 (19) | −0.002 (2) |
C25 | 0.020 (2) | 0.014 (2) | 0.022 (3) | −0.001 (2) | −0.002 (2) | −0.003 (2) |
C26 | 0.018 (3) | 0.017 (3) | 0.036 (3) | 0.002 (2) | −0.001 (2) | −0.004 (2) |
C27 | 0.028 (3) | 0.016 (3) | 0.044 (4) | 0.009 (2) | −0.006 (3) | −0.005 (2) |
C28 | 0.038 (3) | 0.015 (3) | 0.025 (3) | 0.000 (2) | −0.007 (2) | 0.000 (2) |
C29 | 0.030 (3) | 0.016 (2) | 0.020 (3) | −0.005 (2) | −0.001 (2) | −0.003 (2) |
Cu1—N1 | 1.986 (4) | C9—C10 | 1.372 (7) |
Cu1—N3 | 1.996 (4) | C9—H9 | 0.9500 |
Cu1—N2 | 2.076 (4) | C10—C11 | 1.392 (7) |
Cu1—Cl2 | 2.2832 (13) | C10—H10 | 0.9500 |
Cu1—Cl1 | 2.5261 (13) | C11—C12 | 1.382 (7) |
Cu2—N4 | 2.002 (4) | C11—H11 | 0.9500 |
Cu2—N6 | 2.005 (4) | C12—H12 | 0.9500 |
Cu2—N5 | 2.058 (4) | C13—C14 | 1.517 (6) |
Cu2—Cl3 | 2.2484 (14) | C13—H13A | 0.9900 |
Cu2—Cl4 | 2.5361 (14) | C13—H13B | 0.9900 |
O1—H1WA | 0.84 (2) | C14—C15 | 1.524 (6) |
O1—H1WB | 0.84 (2) | C14—H14A | 0.9900 |
O2—H2WA | 0.84 (2) | C14—H14B | 0.9900 |
O2—H2WB | 0.83 (2) | C15—C16 | 1.525 (7) |
N1—C6 | 1.339 (6) | C15—H15A | 0.9900 |
N1—C2 | 1.346 (6) | C15—H15B | 0.9900 |
N2—C1 | 1.473 (6) | C16—C17 | 1.529 (7) |
N2—C7 | 1.486 (6) | C16—H16A | 0.9900 |
N2—C13 | 1.500 (6) | C16—H16B | 0.9900 |
N3—C8 | 1.342 (6) | C17—H17A | 0.9900 |
N3—C12 | 1.348 (6) | C17—H17B | 0.9900 |
N4—C23 | 1.337 (7) | C18—C19 | 1.494 (7) |
N4—C19 | 1.354 (6) | C18—H18A | 0.9900 |
N5—C24 | 1.485 (6) | C18—H18B | 0.9900 |
N5—C17 | 1.487 (6) | C19—C20 | 1.388 (7) |
N5—C18 | 1.488 (6) | C20—C21 | 1.381 (8) |
N6—C29 | 1.343 (7) | C20—H20 | 0.9500 |
N6—C25 | 1.344 (7) | C21—C22 | 1.376 (8) |
C1—C2 | 1.507 (6) | C21—H21 | 0.9500 |
C1—H1A | 0.9900 | C22—C23 | 1.389 (8) |
C1—H1B | 0.9900 | C22—H22 | 0.9500 |
C2—C3 | 1.399 (7) | C23—H23 | 0.9500 |
C3—C4 | 1.386 (7) | C24—C25 | 1.502 (7) |
C3—H3 | 0.9500 | C24—H24A | 0.9900 |
C4—C5 | 1.386 (8) | C24—H24B | 0.9900 |
C4—H4 | 0.9500 | C25—C26 | 1.390 (7) |
C5—C6 | 1.378 (7) | C26—C27 | 1.387 (9) |
C5—H5 | 0.9500 | C26—H26 | 0.9500 |
C6—H6 | 0.9500 | C27—C28 | 1.377 (9) |
C7—C8 | 1.499 (7) | C27—H27 | 0.9500 |
C7—H7A | 0.9900 | C28—C29 | 1.379 (8) |
C7—H7B | 0.9900 | C28—H28 | 0.9500 |
C8—C9 | 1.400 (7) | C29—H29 | 0.9500 |
N1—Cu1—N3 | 163.88 (16) | C9—C10—H10 | 120.4 |
N1—Cu1—N2 | 81.22 (16) | C11—C10—H10 | 120.4 |
N3—Cu1—N2 | 82.68 (16) | C12—C11—C10 | 119.1 (5) |
N1—Cu1—Cl2 | 95.81 (12) | C12—C11—H11 | 120.4 |
N3—Cu1—Cl2 | 97.84 (12) | C10—C11—H11 | 120.4 |
N2—Cu1—Cl2 | 150.55 (12) | N3—C12—C11 | 121.9 (5) |
N1—Cu1—Cl1 | 88.61 (11) | N3—C12—H12 | 119.1 |
N3—Cu1—Cl1 | 94.23 (12) | C11—C12—H12 | 119.1 |
N2—Cu1—Cl1 | 97.55 (11) | N2—C13—C14 | 115.7 (4) |
Cl2—Cu1—Cl1 | 111.72 (5) | N2—C13—H13A | 108.4 |
N4—Cu2—N6 | 161.75 (17) | C14—C13—H13A | 108.4 |
N4—Cu2—N5 | 81.47 (16) | N2—C13—H13B | 108.4 |
N6—Cu2—N5 | 81.02 (16) | C14—C13—H13B | 108.4 |
N4—Cu2—Cl3 | 97.15 (13) | H13A—C13—H13B | 107.4 |
N6—Cu2—Cl3 | 96.33 (13) | C13—C14—C15 | 109.3 (4) |
N5—Cu2—Cl3 | 154.07 (13) | C13—C14—H14A | 109.8 |
N4—Cu2—Cl4 | 94.14 (13) | C15—C14—H14A | 109.8 |
N6—Cu2—Cl4 | 92.95 (13) | C13—C14—H14B | 109.8 |
N5—Cu2—Cl4 | 96.58 (12) | C15—C14—H14B | 109.8 |
Cl3—Cu2—Cl4 | 109.33 (5) | H14A—C14—H14B | 108.3 |
H1WA—O1—H1WB | 117 (9) | C14—C15—C16 | 113.6 (4) |
H2WA—O2—H2WB | 102 (3) | C14—C15—H15A | 108.8 |
C6—N1—C2 | 118.9 (4) | C16—C15—H15A | 108.8 |
C6—N1—Cu1 | 127.6 (3) | C14—C15—H15B | 108.8 |
C2—N1—Cu1 | 113.3 (3) | C16—C15—H15B | 108.8 |
C1—N2—C7 | 113.8 (4) | H15A—C15—H15B | 107.7 |
C1—N2—C13 | 108.5 (4) | C15—C16—C17 | 109.4 (4) |
C7—N2—C13 | 110.8 (3) | C15—C16—H16A | 109.8 |
C1—N2—Cu1 | 103.8 (3) | C17—C16—H16A | 109.8 |
C7—N2—Cu1 | 106.0 (3) | C15—C16—H16B | 109.8 |
C13—N2—Cu1 | 113.9 (3) | C17—C16—H16B | 109.8 |
C8—N3—C12 | 119.0 (4) | H16A—C16—H16B | 108.2 |
C8—N3—Cu1 | 114.2 (3) | N5—C17—C16 | 117.2 (4) |
C12—N3—Cu1 | 126.8 (3) | N5—C17—H17A | 108.0 |
C23—N4—C19 | 119.3 (4) | C16—C17—H17A | 108.0 |
C23—N4—Cu2 | 126.7 (4) | N5—C17—H17B | 108.0 |
C19—N4—Cu2 | 114.0 (3) | C16—C17—H17B | 108.0 |
C24—N5—C17 | 112.4 (4) | H17A—C17—H17B | 107.2 |
C24—N5—C18 | 113.5 (4) | N5—C18—C19 | 108.8 (4) |
C17—N5—C18 | 112.1 (4) | N5—C18—H18A | 109.9 |
C24—N5—Cu2 | 104.3 (3) | C19—C18—H18A | 109.9 |
C17—N5—Cu2 | 107.6 (3) | N5—C18—H18B | 109.9 |
C18—N5—Cu2 | 106.4 (3) | C19—C18—H18B | 109.9 |
C29—N6—C25 | 118.5 (5) | H18A—C18—H18B | 108.3 |
C29—N6—Cu2 | 128.1 (4) | N4—C19—C20 | 121.0 (5) |
C25—N6—Cu2 | 113.3 (3) | N4—C19—C18 | 115.7 (4) |
N2—C1—C2 | 109.1 (4) | C20—C19—C18 | 123.2 (5) |
N2—C1—H1A | 109.9 | C21—C20—C19 | 119.4 (5) |
C2—C1—H1A | 109.9 | C21—C20—H20 | 120.3 |
N2—C1—H1B | 109.9 | C19—C20—H20 | 120.3 |
C2—C1—H1B | 109.9 | C22—C21—C20 | 119.3 (5) |
H1A—C1—H1B | 108.3 | C22—C21—H21 | 120.4 |
N1—C2—C3 | 121.9 (5) | C20—C21—H21 | 120.4 |
N1—C2—C1 | 115.4 (4) | C21—C22—C23 | 119.0 (5) |
C3—C2—C1 | 122.6 (5) | C21—C22—H22 | 120.5 |
C4—C3—C2 | 118.1 (5) | C23—C22—H22 | 120.5 |
C4—C3—H3 | 121.0 | N4—C23—C22 | 122.0 (5) |
C2—C3—H3 | 121.0 | N4—C23—H23 | 119.0 |
C5—C4—C3 | 119.9 (5) | C22—C23—H23 | 119.0 |
C5—C4—H4 | 120.1 | N5—C24—C25 | 109.3 (4) |
C3—C4—H4 | 120.1 | N5—C24—H24A | 109.8 |
C6—C5—C4 | 118.4 (5) | C25—C24—H24A | 109.8 |
C6—C5—H5 | 120.8 | N5—C24—H24B | 109.8 |
C4—C5—H5 | 120.8 | C25—C24—H24B | 109.8 |
N1—C6—C5 | 122.7 (5) | H24A—C24—H24B | 108.3 |
N1—C6—H6 | 118.6 | N6—C25—C26 | 122.5 (5) |
C5—C6—H6 | 118.6 | N6—C25—C24 | 115.1 (4) |
N2—C7—C8 | 110.7 (4) | C26—C25—C24 | 122.4 (5) |
N2—C7—H7A | 109.5 | C27—C26—C25 | 117.9 (6) |
C8—C7—H7A | 109.5 | C27—C26—H26 | 121.0 |
N2—C7—H7B | 109.5 | C25—C26—H26 | 121.0 |
C8—C7—H7B | 109.5 | C28—C27—C26 | 119.9 (5) |
H7A—C7—H7B | 108.1 | C28—C27—H27 | 120.0 |
N3—C8—C9 | 121.8 (4) | C26—C27—H27 | 120.0 |
N3—C8—C7 | 116.3 (4) | C27—C28—C29 | 118.7 (5) |
C9—C8—C7 | 121.8 (4) | C27—C28—H28 | 120.7 |
C10—C9—C8 | 119.0 (5) | C29—C28—H28 | 120.7 |
C10—C9—H9 | 120.5 | N6—C29—C28 | 122.5 (5) |
C8—C9—H9 | 120.5 | N6—C29—H29 | 118.8 |
C9—C10—C11 | 119.2 (5) | C28—C29—H29 | 118.8 |
N3—Cu1—N1—C6 | −160.7 (5) | N1—C2—C3—C4 | 0.6 (7) |
N2—Cu1—N1—C6 | −163.3 (4) | C1—C2—C3—C4 | 178.1 (4) |
Cl2—Cu1—N1—C6 | −12.9 (4) | C2—C3—C4—C5 | 0.0 (7) |
Cl1—Cu1—N1—C6 | 98.8 (4) | C3—C4—C5—C6 | −0.4 (7) |
N3—Cu1—N1—C2 | 25.0 (8) | C2—N1—C6—C5 | 0.2 (7) |
N2—Cu1—N1—C2 | 22.3 (3) | Cu1—N1—C6—C5 | −173.8 (4) |
Cl2—Cu1—N1—C2 | 172.8 (3) | C4—C5—C6—N1 | 0.3 (7) |
Cl1—Cu1—N1—C2 | −75.5 (3) | C1—N2—C7—C8 | −147.0 (4) |
N1—Cu1—N2—C1 | −35.2 (3) | C13—N2—C7—C8 | 90.5 (4) |
N3—Cu1—N2—C1 | 145.6 (3) | Cu1—N2—C7—C8 | −33.5 (4) |
Cl2—Cu1—N2—C1 | −121.5 (3) | C12—N3—C8—C9 | −1.1 (7) |
Cl1—Cu1—N2—C1 | 52.2 (3) | Cu1—N3—C8—C9 | 178.0 (3) |
N1—Cu1—N2—C7 | −155.4 (3) | C12—N3—C8—C7 | 177.0 (4) |
N3—Cu1—N2—C7 | 25.4 (3) | Cu1—N3—C8—C7 | −3.9 (5) |
Cl2—Cu1—N2—C7 | 118.4 (3) | N2—C7—C8—N3 | 26.3 (6) |
Cl1—Cu1—N2—C7 | −68.0 (3) | N2—C7—C8—C9 | −155.6 (4) |
N1—Cu1—N2—C13 | 82.6 (3) | N3—C8—C9—C10 | 0.8 (7) |
N3—Cu1—N2—C13 | −96.7 (3) | C7—C8—C9—C10 | −177.2 (4) |
Cl2—Cu1—N2—C13 | −3.7 (4) | C8—C9—C10—C11 | 0.5 (7) |
Cl1—Cu1—N2—C13 | 170.0 (3) | C9—C10—C11—C12 | −1.4 (8) |
N1—Cu1—N3—C8 | −15.3 (8) | C8—N3—C12—C11 | 0.2 (7) |
N2—Cu1—N3—C8 | −12.7 (3) | Cu1—N3—C12—C11 | −178.8 (4) |
Cl2—Cu1—N3—C8 | −162.9 (3) | C10—C11—C12—N3 | 1.1 (8) |
Cl1—Cu1—N3—C8 | 84.4 (3) | C1—N2—C13—C14 | 168.1 (4) |
N1—Cu1—N3—C12 | 163.7 (5) | C7—N2—C13—C14 | −66.4 (5) |
N2—Cu1—N3—C12 | 166.4 (4) | Cu1—N2—C13—C14 | 53.0 (5) |
Cl2—Cu1—N3—C12 | 16.1 (4) | N2—C13—C14—C15 | 174.9 (4) |
Cl1—Cu1—N3—C12 | −96.6 (4) | C13—C14—C15—C16 | −171.3 (4) |
N6—Cu2—N4—C23 | −149.6 (5) | C14—C15—C16—C17 | 169.4 (4) |
N5—Cu2—N4—C23 | −166.1 (4) | C24—N5—C17—C16 | 60.6 (5) |
Cl3—Cu2—N4—C23 | −12.3 (4) | C18—N5—C17—C16 | −68.6 (5) |
Cl4—Cu2—N4—C23 | 97.8 (4) | Cu2—N5—C17—C16 | 174.8 (3) |
N6—Cu2—N4—C19 | 32.0 (7) | C15—C16—C17—N5 | −168.8 (4) |
N5—Cu2—N4—C19 | 15.5 (3) | C24—N5—C18—C19 | 153.0 (4) |
Cl3—Cu2—N4—C19 | 169.4 (3) | C17—N5—C18—C19 | −78.4 (5) |
Cl4—Cu2—N4—C19 | −80.6 (3) | Cu2—N5—C18—C19 | 39.0 (4) |
N4—Cu2—N5—C24 | −150.3 (3) | C23—N4—C19—C20 | 2.2 (7) |
N6—Cu2—N5—C24 | 34.9 (3) | Cu2—N4—C19—C20 | −179.3 (4) |
Cl3—Cu2—N5—C24 | 120.9 (3) | C23—N4—C19—C18 | −175.0 (4) |
Cl4—Cu2—N5—C24 | −57.0 (3) | Cu2—N4—C19—C18 | 3.5 (5) |
N4—Cu2—N5—C17 | 90.3 (3) | N5—C18—C19—N4 | −29.2 (6) |
N6—Cu2—N5—C17 | −84.6 (3) | N5—C18—C19—C20 | 153.7 (5) |
Cl3—Cu2—N5—C17 | 1.5 (5) | N4—C19—C20—C21 | −2.9 (8) |
Cl4—Cu2—N5—C17 | −176.5 (3) | C18—C19—C20—C21 | 174.0 (5) |
N4—Cu2—N5—C18 | −30.1 (3) | C19—C20—C21—C22 | 0.9 (9) |
N6—Cu2—N5—C18 | 155.1 (3) | C20—C21—C22—C23 | 1.7 (8) |
Cl3—Cu2—N5—C18 | −118.9 (3) | C19—N4—C23—C22 | 0.5 (8) |
Cl4—Cu2—N5—C18 | 63.2 (3) | Cu2—N4—C23—C22 | −177.8 (4) |
N4—Cu2—N6—C29 | 144.3 (5) | C21—C22—C23—N4 | −2.5 (8) |
N5—Cu2—N6—C29 | 160.9 (5) | C17—N5—C24—C25 | 74.5 (5) |
Cl3—Cu2—N6—C29 | 6.9 (4) | C18—N5—C24—C25 | −157.0 (4) |
Cl4—Cu2—N6—C29 | −102.9 (4) | Cu2—N5—C24—C25 | −41.7 (4) |
N4—Cu2—N6—C25 | −39.2 (7) | C29—N6—C25—C26 | 3.1 (7) |
N5—Cu2—N6—C25 | −22.6 (3) | Cu2—N6—C25—C26 | −173.8 (4) |
Cl3—Cu2—N6—C25 | −176.6 (3) | C29—N6—C25—C24 | −179.3 (4) |
Cl4—Cu2—N6—C25 | 73.6 (3) | Cu2—N6—C25—C24 | 3.8 (5) |
C7—N2—C1—C2 | 156.6 (4) | N5—C24—C25—N6 | 26.7 (6) |
C13—N2—C1—C2 | −79.7 (4) | N5—C24—C25—C26 | −155.7 (5) |
Cu1—N2—C1—C2 | 41.8 (4) | N6—C25—C26—C27 | −1.0 (8) |
C6—N1—C2—C3 | −0.7 (7) | C24—C25—C26—C27 | −178.4 (5) |
Cu1—N1—C2—C3 | 174.2 (4) | C25—C26—C27—C28 | −1.9 (8) |
C6—N1—C2—C1 | −178.3 (4) | C26—C27—C28—C29 | 2.6 (8) |
Cu1—N1—C2—C1 | −3.5 (5) | C25—N6—C29—C28 | −2.3 (8) |
N2—C1—C2—N1 | −27.4 (5) | Cu2—N6—C29—C28 | 174.0 (4) |
N2—C1—C2—C3 | 154.9 (4) | C27—C28—C29—N6 | −0.5 (8) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2WB···Cl1i | 0.83 (2) | 2.54 (7) | 3.270 (8) | 147 (11) |
O2—H2WA···O1ii | 0.84 (2) | 2.46 (4) | 3.249 (11) | 157 (10) |
O1—H1WB···Cl2iii | 0.84 (2) | 2.54 (4) | 3.335 (6) | 159 (8) |
O1—H1WA···Cl4iv | 0.84 (2) | 2.47 (3) | 3.306 (6) | 169 (10) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, y−1/2, −z+3/2; (iii) x, −y+3/2, z−1/2; (iv) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | [Cu2Cl4(C29H34N6)]·1.5H2O |
Mr | 762.55 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 90 |
a, b, c (Å) | 8.2003 (13), 14.3700 (16), 27.688 (4) |
β (°) | 97.919 (6) |
V (Å3) | 3231.6 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.68 |
Crystal size (mm) | 0.22 × 0.16 × 0.12 |
Data collection | |
Diffractometer | Bruker APEX CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.709, 0.824 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 31227, 7827, 7421 |
Rint | 0.050 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.079, 0.156, 1.40 |
No. of reflections | 7827 |
No. of parameters | 404 |
No. of restraints | 5 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
w = 1/[σ2(Fo2) + (0.0289P)2 + 16.2006P] where P = (Fo2 + 2Fc2)/3 | |
Δρmax, Δρmin (e Å−3) | 0.81, −0.67 |
Computer programs: SMART (Bruker, 2002), SAINT (Bruker, 2002), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg & Putz, 1999), SHELXTL (Sheldrick, 2008).
Cu1—N1 | 1.986 (4) | Cu1—Cl2 | 2.2832 (13) |
Cu1—N3 | 1.996 (4) | Cu1—Cl1 | 2.5261 (13) |
Cu1—N2 | 2.076 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2WB···Cl1i | 0.83 (2) | 2.54 (7) | 3.270 (8) | 147 (11) |
O2—H2WA···O1ii | 0.84 (2) | 2.46 (4) | 3.249 (11) | 157 (10) |
O1—H1WB···Cl2iii | 0.84 (2) | 2.54 (4) | 3.335 (6) | 159 (8) |
O1—H1WA···Cl4iv | 0.84 (2) | 2.47 (3) | 3.306 (6) | 169 (10) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, y−1/2, −z+3/2; (iii) x, −y+3/2, z−1/2; (iv) x, y+1, z. |
Footnotes
‡Current address: Harvard Medical School, Children's Hospital Boston, Department of Radiology, 300 Longwood Ave, Enders 4, Boston, MA 02115 USA.
Acknowledgements
This work was supported by funding from Syracuse University.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The described ligand has been used as starting material for hydrothermal synthesis of metal-organic transition metal/molybdateoxide frameworks in the principal author's laboratory (Bartholomä, unpublished results). The dipicolylamine moiety has originally been developed in our laboratory as metal chelating entity for binding of the M(CO)3 core (M = Re,99mTc) for radiopharmaceutical purposes. However, a different coordination mode has been observed for the M(CO)3 core in which the dipicolylamine metal chelate is coordinated in a facial manner (Bartholomä, 2009).
The title complex was prepared as part of a series with different cadmium and copper salts to study the coordination properties of the ligand with these metals without the interaction of metaloxide clusters (Bartholomä, 2010a,b,d). The shorter homologue N1,N1,N4,N4-tetrakis(pyridin-2-ylmethyl)butane-1,4-diamine gave structurally similar complexes with copper bromide as metal salt. The corresponding Cu—Npy distances are 2.015 (6) Å and 2.019 (6) Å and the Cu—Ntert distance was determined to 2.053 (5) Å (Bartholomä, 2010c).
Crystal structures of the ligands N1,N1,N3,N3-tetrakis(2-pyridiniomethyl)-1,3-diaminopropane and N1,N1,N4,N4-tetrakis(pyridin-2-ylmethyl)butane-1,4-diamine have been described recently (Fujihara, 2004; Mambanda, 2007). Superoxide dismutase activity of iron(II) complexes of N1,N1,N3,N3-tetrakis(2-pyridiniomethyl)-1,3-diaminopropane and related ligands has been investigated by Tamura et al. (2000). Studies on the thermodynamic and kinetic behaviour of the reaction of platinum(II) complexes of higher ligand homologues with chloride have been performed by Ertürk et al. (2007).