organic compounds
Ethoxycarbonylmethyl 3-(4-chlorobenzylidene)dithiocarbazate
aScientific Society of Nanotechnology, Islamic Azad University, Yazd Branch, Yazd, Iran, bDepartment of Chemistry, Islamic Azad University, Qom Branch, Qom, Iran, cDepartment of Chemistry, Islamic Azad University, Yazd Branch, Yazd, Iran, and dDepartment of Chemistry, The University of Calgary, 2500 University Drive NW, Calgary, Alberta, Canada T2N 1N4
*Correspondence e-mail: tabatabaee45m@yahoo.com
Molecules of the title compound, C12H13ClN2O2S2, are linked into centrosymmetric dimers by pairs of intermolecular N—H⋯S hydrogen bonds. In the there are π–π stacking interactions between symmetry-related benzene rings with a centroid–centroid distance of 3.7305 (13) Å, a perpendicular distance between the planes of 3.2851 (9) Å and a slippage of 1.768 Å. The structure is further stabilized by weak intermolecular C—H⋯O hydrogen bonds.
Related literature
For the biological activity of related compounds, see: Gülerman et al. (2001); Duran et al. (2002). For related structures, see: Tabatabaee et al. (2006, 2007, 2008, 2009).
Experimental
Crystal data
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Refinement
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Data collection: COLLECT (Hooft, 1998); cell DENZO (Otwinowski & Minor, 1997); data reduction: SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S160053681003549X/lh5124sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681003549X/lh5124Isup2.hkl
A solution of N-aminorhodanine (5 mmol) in EtOH (20 ml) was treated with 2-chlorobenzaldehyde (5 mmol) and the resulting mixture was acidified with 37% hydrochloric acid (0.2 ml). The reaction mixture was refluxed for 8 h. After completion of the reaction, the solid residue was filtered, washed with cold ethanol (10 ml) and recrystallized from EtOH.
The H-atoms were visible in difference Fourier maps but were included in the
in geometrically idealized positions with distances N—H = 0.88 Å and C—H = 0.95, 0.98 and 0.99 Å for aryl, methyl and methylene type H-atoms, respectively. The H-atoms were assigned Uiso = 1.2 × Ueq of the parent atoms. The final difference map was free of chemically significant features.Data collection: COLLECT (Hooft, 1998); cell
DENZO (Otwinowski & Minor, 1997); data reduction: SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C12H13ClN2O2S2 | Z = 2 |
Mr = 316.81 | F(000) = 328 |
Triclinic, P1 | Dx = 1.468 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.3425 (3) Å | Cell parameters from 3737 reflections |
b = 10.3894 (4) Å | θ = 1.0–29.6° |
c = 10.6457 (5) Å | µ = 0.56 mm−1 |
α = 116.535 (2)° | T = 173 K |
β = 95.049 (2)° | Block, colorless |
γ = 94.955 (2)° | 0.12 × 0.08 × 0.06 mm |
V = 716.50 (5) Å3 |
Nonius KappaCCD diffractometer with APEXII CCD | 3996 independent reflections |
Radiation source: fine-focus sealed tube | 3361 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
ω and ϕ scans | θmax = 29.7°, θmin = 2.2° |
Absorption correction: multi-scan (SORTAV; Blessing, 1997) | h = −10→10 |
Tmin = 0.936, Tmax = 0.967 | k = −14→14 |
12341 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0252P)2 + 0.6628P] where P = (Fo2 + 2Fc2)/3 |
3996 reflections | (Δ/σ)max < 0.001 |
173 parameters | Δρmax = 0.47 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C12H13ClN2O2S2 | γ = 94.955 (2)° |
Mr = 316.81 | V = 716.50 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.3425 (3) Å | Mo Kα radiation |
b = 10.3894 (4) Å | µ = 0.56 mm−1 |
c = 10.6457 (5) Å | T = 173 K |
α = 116.535 (2)° | 0.12 × 0.08 × 0.06 mm |
β = 95.049 (2)° |
Nonius KappaCCD diffractometer with APEXII CCD | 3996 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1997) | 3361 reflections with I > 2σ(I) |
Tmin = 0.936, Tmax = 0.967 | Rint = 0.031 |
12341 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.47 e Å−3 |
3996 reflections | Δρmin = −0.26 e Å−3 |
173 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.89852 (9) | 0.10405 (6) | 0.44205 (7) | 0.04491 (16) | |
S1 | 0.37647 (8) | 0.94428 (5) | 0.28183 (6) | 0.03285 (14) | |
S2 | 0.37807 (7) | 0.61903 (5) | 0.12742 (5) | 0.02750 (12) | |
O1 | −0.0267 (2) | 0.65882 (18) | 0.13349 (16) | 0.0355 (3) | |
O2 | −0.0309 (2) | 0.76565 (17) | −0.00860 (17) | 0.0348 (3) | |
N1 | 0.5839 (2) | 0.65588 (17) | 0.36811 (18) | 0.0251 (3) | |
N2 | 0.5413 (2) | 0.78764 (17) | 0.38235 (17) | 0.0259 (3) | |
H2N | 0.5813 | 0.8681 | 0.4610 | 0.031* | |
C1 | 0.7182 (2) | 0.5188 (2) | 0.4706 (2) | 0.0224 (3) | |
C2 | 0.8110 (3) | 0.5168 (2) | 0.5894 (2) | 0.0260 (4) | |
H2 | 0.8383 | 0.6039 | 0.6763 | 0.031* | |
C3 | 0.8640 (3) | 0.3890 (2) | 0.5824 (2) | 0.0280 (4) | |
H3 | 0.9271 | 0.3880 | 0.6637 | 0.034* | |
C4 | 0.8236 (3) | 0.2634 (2) | 0.4555 (2) | 0.0292 (4) | |
C5 | 0.7266 (3) | 0.2612 (2) | 0.3364 (2) | 0.0306 (4) | |
H5 | 0.6973 | 0.1733 | 0.2505 | 0.037* | |
C6 | 0.6734 (3) | 0.3889 (2) | 0.3448 (2) | 0.0263 (4) | |
H6 | 0.6057 | 0.3884 | 0.2642 | 0.032* | |
C7 | 0.6691 (3) | 0.6550 (2) | 0.4777 (2) | 0.0244 (4) | |
H7 | 0.7005 | 0.7428 | 0.5636 | 0.029* | |
C8 | 0.4379 (3) | 0.7910 (2) | 0.2744 (2) | 0.0238 (4) | |
C9 | 0.2345 (3) | 0.6622 (2) | 0.0105 (2) | 0.0291 (4) | |
H9A | 0.2984 | 0.7477 | 0.0061 | 0.035* | |
H9B | 0.2172 | 0.5795 | −0.0861 | 0.035* | |
C10 | 0.0471 (3) | 0.6945 (2) | 0.0554 (2) | 0.0281 (4) | |
C11 | −0.2133 (3) | 0.8016 (3) | 0.0258 (3) | 0.0419 (5) | |
H11A | −0.2092 | 0.8571 | 0.1298 | 0.050* | |
H11B | −0.3024 | 0.7118 | −0.0090 | 0.050* | |
C12 | −0.2709 (4) | 0.8910 (3) | −0.0444 (3) | 0.0506 (6) | |
H12A | −0.3951 | 0.9147 | −0.0251 | 0.061* | |
H12B | −0.2716 | 0.8359 | −0.1470 | 0.061* | |
H12C | −0.1839 | 0.9809 | −0.0071 | 0.061* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0472 (3) | 0.0344 (3) | 0.0633 (4) | 0.0143 (2) | 0.0028 (3) | 0.0306 (3) |
S1 | 0.0483 (3) | 0.0196 (2) | 0.0283 (3) | 0.0074 (2) | −0.0043 (2) | 0.01017 (19) |
S2 | 0.0359 (3) | 0.0192 (2) | 0.0239 (2) | 0.00528 (18) | 0.00303 (19) | 0.00682 (18) |
O1 | 0.0363 (8) | 0.0418 (9) | 0.0338 (8) | 0.0012 (7) | 0.0033 (6) | 0.0230 (7) |
O2 | 0.0362 (8) | 0.0390 (8) | 0.0361 (8) | 0.0066 (7) | 0.0033 (6) | 0.0233 (7) |
N1 | 0.0275 (8) | 0.0193 (7) | 0.0301 (8) | 0.0055 (6) | 0.0036 (6) | 0.0124 (7) |
N2 | 0.0331 (9) | 0.0173 (7) | 0.0253 (8) | 0.0037 (6) | 0.0000 (6) | 0.0087 (6) |
C1 | 0.0212 (8) | 0.0232 (8) | 0.0266 (9) | 0.0048 (7) | 0.0044 (7) | 0.0143 (7) |
C2 | 0.0254 (9) | 0.0293 (9) | 0.0253 (9) | 0.0058 (7) | 0.0051 (7) | 0.0136 (8) |
C3 | 0.0243 (9) | 0.0367 (10) | 0.0311 (10) | 0.0070 (8) | 0.0045 (7) | 0.0219 (9) |
C4 | 0.0263 (9) | 0.0290 (10) | 0.0405 (11) | 0.0073 (8) | 0.0071 (8) | 0.0223 (9) |
C5 | 0.0365 (11) | 0.0243 (9) | 0.0306 (10) | 0.0066 (8) | 0.0039 (8) | 0.0121 (8) |
C6 | 0.0293 (9) | 0.0270 (9) | 0.0251 (9) | 0.0046 (7) | 0.0013 (7) | 0.0144 (8) |
C7 | 0.0238 (8) | 0.0215 (8) | 0.0268 (9) | 0.0047 (7) | 0.0048 (7) | 0.0098 (7) |
C8 | 0.0274 (9) | 0.0207 (8) | 0.0239 (9) | 0.0030 (7) | 0.0045 (7) | 0.0108 (7) |
C9 | 0.0361 (10) | 0.0271 (9) | 0.0215 (9) | 0.0003 (8) | 0.0013 (8) | 0.0098 (8) |
C10 | 0.0336 (10) | 0.0238 (9) | 0.0237 (9) | −0.0009 (8) | −0.0020 (8) | 0.0099 (8) |
C11 | 0.0372 (12) | 0.0431 (13) | 0.0504 (14) | 0.0093 (10) | 0.0063 (10) | 0.0252 (12) |
C12 | 0.0539 (16) | 0.0440 (14) | 0.0556 (16) | 0.0164 (12) | 0.0016 (13) | 0.0237 (13) |
Cl1—C4 | 1.739 (2) | C3—C4 | 1.380 (3) |
S1—C8 | 1.6618 (19) | C3—H3 | 0.9500 |
S2—C8 | 1.7548 (19) | C4—C5 | 1.389 (3) |
S2—C9 | 1.792 (2) | C5—C6 | 1.382 (3) |
O1—C10 | 1.201 (2) | C5—H5 | 0.9500 |
O2—C10 | 1.339 (2) | C6—H6 | 0.9500 |
O2—C11 | 1.455 (3) | C7—H7 | 0.9500 |
N1—C7 | 1.279 (2) | C9—C10 | 1.513 (3) |
N1—N2 | 1.375 (2) | C9—H9A | 0.9900 |
N2—C8 | 1.337 (2) | C9—H9B | 0.9900 |
N2—H2N | 0.8800 | C11—C12 | 1.493 (3) |
C1—C2 | 1.392 (2) | C11—H11A | 0.9900 |
C1—C6 | 1.398 (3) | C11—H11B | 0.9900 |
C1—C7 | 1.462 (2) | C12—H12A | 0.9800 |
C2—C3 | 1.388 (3) | C12—H12B | 0.9800 |
C2—H2 | 0.9500 | C12—H12C | 0.9800 |
C8—S2—C9 | 100.82 (9) | C1—C7—H7 | 120.1 |
C10—O2—C11 | 115.16 (17) | N2—C8—S1 | 122.37 (14) |
C7—N1—N2 | 116.85 (16) | N2—C8—S2 | 112.84 (13) |
C8—N2—N1 | 118.65 (16) | S1—C8—S2 | 124.78 (11) |
C8—N2—H2N | 120.7 | C10—C9—S2 | 113.36 (14) |
N1—N2—H2N | 120.7 | C10—C9—H9A | 108.9 |
C2—C1—C6 | 119.06 (17) | S2—C9—H9A | 108.9 |
C2—C1—C7 | 120.29 (17) | C10—C9—H9B | 108.9 |
C6—C1—C7 | 120.66 (16) | S2—C9—H9B | 108.9 |
C3—C2—C1 | 120.73 (18) | H9A—C9—H9B | 107.7 |
C3—C2—H2 | 119.6 | O1—C10—O2 | 123.7 (2) |
C1—C2—H2 | 119.6 | O1—C10—C9 | 126.00 (19) |
C4—C3—C2 | 118.96 (18) | O2—C10—C9 | 110.25 (17) |
C4—C3—H3 | 120.5 | O2—C11—C12 | 107.7 (2) |
C2—C3—H3 | 120.5 | O2—C11—H11A | 110.2 |
C3—C4—C5 | 121.55 (18) | C12—C11—H11A | 110.2 |
C3—C4—Cl1 | 119.71 (15) | O2—C11—H11B | 110.2 |
C5—C4—Cl1 | 118.73 (16) | C12—C11—H11B | 110.2 |
C6—C5—C4 | 119.01 (19) | H11A—C11—H11B | 108.5 |
C6—C5—H5 | 120.5 | C11—C12—H12A | 109.5 |
C4—C5—H5 | 120.5 | C11—C12—H12B | 109.5 |
C5—C6—C1 | 120.63 (17) | H12A—C12—H12B | 109.5 |
C5—C6—H6 | 119.7 | C11—C12—H12C | 109.5 |
C1—C6—H6 | 119.7 | H12A—C12—H12C | 109.5 |
N1—C7—C1 | 119.89 (17) | H12B—C12—H12C | 109.5 |
N1—C7—H7 | 120.1 | ||
C7—N1—N2—C8 | −174.09 (18) | C2—C1—C7—N1 | −179.95 (18) |
C6—C1—C2—C3 | 2.1 (3) | C6—C1—C7—N1 | 0.2 (3) |
C7—C1—C2—C3 | −177.71 (18) | N1—N2—C8—S1 | 179.15 (14) |
C1—C2—C3—C4 | 0.1 (3) | N1—N2—C8—S2 | −1.3 (2) |
C2—C3—C4—C5 | −1.9 (3) | C9—S2—C8—N2 | 177.22 (15) |
C2—C3—C4—Cl1 | 176.88 (15) | C9—S2—C8—S1 | −3.25 (16) |
C3—C4—C5—C6 | 1.5 (3) | C8—S2—C9—C10 | −73.08 (15) |
Cl1—C4—C5—C6 | −177.31 (16) | C11—O2—C10—O1 | 1.6 (3) |
C4—C5—C6—C1 | 0.8 (3) | C11—O2—C10—C9 | 179.48 (17) |
C2—C1—C6—C5 | −2.6 (3) | S2—C9—C10—O1 | −20.3 (3) |
C7—C1—C6—C5 | 177.28 (18) | S2—C9—C10—O2 | 161.95 (14) |
N2—N1—C7—C1 | 179.74 (16) | C10—O2—C11—C12 | 175.16 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···S1i | 0.88 | 2.52 | 3.3669 (17) | 161 |
C3—H3···O1ii | 0.95 | 2.48 | 3.410 (2) | 166 |
C9—H9B···O1iii | 0.99 | 2.55 | 3.153 (3) | 119 |
C9—H9A···S1 | 0.99 | 2.69 | 3.066 (2) | 103 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+1, −y+1, −z+1; (iii) −x, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C12H13ClN2O2S2 |
Mr | 316.81 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 173 |
a, b, c (Å) | 7.3425 (3), 10.3894 (4), 10.6457 (5) |
α, β, γ (°) | 116.535 (2), 95.049 (2), 94.955 (2) |
V (Å3) | 716.50 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.56 |
Crystal size (mm) | 0.12 × 0.08 × 0.06 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer with APEXII CCD |
Absorption correction | Multi-scan (SORTAV; Blessing, 1997) |
Tmin, Tmax | 0.936, 0.967 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12341, 3996, 3361 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.697 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.104, 1.09 |
No. of reflections | 3996 |
No. of parameters | 173 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.47, −0.26 |
Computer programs: COLLECT (Hooft, 1998), DENZO (Otwinowski & Minor, 1997), SCALEPACK (Otwinowski & Minor, 1997), SIR92 (Altomare et al., 1994), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···S1i | 0.88 | 2.52 | 3.3669 (17) | 161 |
C3—H3···O1ii | 0.95 | 2.48 | 3.410 (2) | 166 |
C9—H9B···O1iii | 0.99 | 2.55 | 3.153 (3) | 119 |
C9—H9A···S1 | 0.99 | 2.69 | 3.066 (2) | 103 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+1, −y+1, −z+1; (iii) −x, −y+1, −z. |
Acknowledgements
The authors are grateful to Scientific Society of Nanotechnology, Islamic Azad University, Yazd Branch, for support of this work.
References
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Thiones of nitrogen-containing heterocycles have attracted the attention of researchers in recent years because of their synthetic possibilities and useful properties. Several compounds containing sulfur and nitrogen atoms are anti-inflammatory, sedative, antibacterial, antiviral, or antitumor and synthesis of the corresponding iminic compounds could be of interest from the viewpoint of chemical reactivity and biological activity (Gülerman et al., 2001; Duran et al., 2002). In a sequence of studies, we have investigated the synthesis and crystal structures of several Schiff bases derived from 4-amino-5-methyl-2H-1,2,4-triazole-3(4H)-thione (AMTT) and 4-amino-6-methyl-3-thio-3,4-dihydro-1,2,4-triazin-5(2H)-one (AMTTO) (Tabatabaee et al., 2006; 2007; 2008; 2009). Here, we report our results for the synthesis and crystal structure of a new iminic compounds derived from N-aminorhodanine, (I).
In the title molecule (Fig. 1) bond distances and angles are unexceptional and agree with the corresponding bond distances and angles reported in the related compounds (Tabatabaee et al., 2006; 2007; 2008; 2009). In the solid state, intermolecular N—H···S hydrogen bonds in the title compound link the molecules lying about inversion centers leading to centrosymmetric dimers (Tab. 1 & Fig. 2). Moreover, the benzene rings C1–C6 and C1i–C6i (i= 2 - x, 1 - y, 1 - z) show π-π stacking interactions (Fig. 3) with centroid-centroid distance 3.7305 (13) Å, the angle between the planes 0 °; the perpendicular distance between the planes 3.2851 (9) Å and the slippage 1.768 Å. The structure is further stabilized by intermolecular hydrogen bonding of C—H···O type (Tab. 1); unit cell packing showing hydrogen bonding interactions has been presented in Figure 4.