organic compounds
2-(2-Nitroanilino)-4,5,6,7-tetrahydrobenzo[b]thiophene-3-carbonitrile
aLaboratório de Síntese e Vetorização de Moléculas Bioativas, Universidade Estadual da Paraíba, 58020-540 João Pessoa, PB, Brazil, bLaboratório de Síntese e Planejamento de Fármacos, Departamento de Antibióticos, Universidade Federal de Pernambuco, 50670-910 Recife, PE, Brazil, and cDepartamento de Física e Informática, Instituto de Física de São Carlos, Universidade de São Paulo - USP, 13560-970 São Carlos, SP, Brazil
*Correspondence e-mail: casimone@ifsc.usp.br
The title compound, C15H13N3O2S, was synthesized by the reaction of 2-amino-5,6,7,8-tetrahydro-4H-cyclohepta[b]thiophene-3-carbonitrile and o-fluoronitrobenzene. The dihedral angle between the thiophene and nitrophenyl rings is 75.15 (2)°. In the crystal, intermolecular N—H⋯N and C—H⋯O interactions lead to the formation of a supramolecular chain extending along the c-axis direction.
Related literature
For background to 2-substituted thiophenes, see: Puterová et al. (2009). For the biological activity of 2-amino-benzo[b]thiophene derivatives, see: Fakhr et al. (2008); Baraldi et al. (2006). For the synthesis of 2-amino thiophenes, see: Gewald et al. (1966). For puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: COLLECT (Nonius, 1997); cell SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536810035439/tk2704sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810035439/tk2704Isup2.hkl
Under nitrogen and at 273 K, a dry THF solution (80 ml) of 2-amino-4,5,6,7- tetrahydro-4H-benzo[b]thiophene-3-carbonitrile (0.07 mol) and o-fluoro-nitrobenzene (0.07 mol) was added drop wise to a stirred suspension of NaH (0.105 mol) in dry THF (20 ml). The reaction mixture was stirred at room temperature for 24 h. The resulting mixture was adjusted to pH = 5 with 2 N HCl and then extracted with CHCl3. The extract was washed with aqueous Na2CO3 and water, dried over CaCl2, and evaporated under reduced pressure. The dark-red solid obtained was purified by recrystallization from absolute ethanol, affording the title compound as red crystals; yield 11.72 g (56%), m.pt 275–276 K (Gewald et al., 1966). Crystals were grown by evaporation at room temperature of its dichloromethane solution.
NMR 1H (200 MHz, CDCl3) δ: 1.84–1.87 (m, 4H), 2.63–2.73 (m, 4H), 6.91 (dt, 1H, J = 8.6, 1.4 Hz), 7.18 (dd, 1H, J = 8.6, 1.0 Hz), 7.51 (dt, 1H, J = 8.6, 8.2, 7.4 Hz), 8.22 (dd, 1H, J = 8.4, 1.4 Hz), 9.6 (s, 1H) p.p.m.
All H atoms attached were fixed geometrically and treated as riding with C—H = 0.93 Å (aromatic) or 0.97 Å (methylene) and N—H = 0.86 Å, and with Uiso(H) = 1.2Ueq(C or N).
Data collection: COLLECT (Nonius, 1997); cell
SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).C15H13N3O2S | F(000) = 624 |
Mr = 299.34 | Dx = 1.415 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4953 reflections |
a = 13.2764 (4) Å | θ = 2.9–27.5° |
b = 13.4447 (7) Å | µ = 0.24 mm−1 |
c = 8.2237 (4) Å | T = 295 K |
β = 106.794 (2)° | Prism, yellow |
V = 1405.30 (11) Å3 | 0.27 × 0.19 × 0.17 mm |
Z = 4 |
Nonius KappaCCD diffractometer | 2351 reflections with I > 2σ(I) |
Radiation source: Enraf Nonius FR590 | Rint = 0.051 |
Horizonally mounted graphite crystal monochromator | θmax = 27.5°, θmin = 3.0° |
Detector resolution: 9 pixels mm-1 | h = −17→17 |
CCD rotation images,thick slices scans | k = −17→17 |
9590 measured reflections | l = −9→10 |
3241 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.057 | H-atom parameters constrained |
wR(F2) = 0.174 | w = 1/[σ2(Fo2) + (0.1015P)2 + 0.2662P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max < 0.001 |
3241 reflections | Δρmax = 0.45 e Å−3 |
192 parameters | Δρmin = −0.38 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.133 (13) |
C15H13N3O2S | V = 1405.30 (11) Å3 |
Mr = 299.34 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 13.2764 (4) Å | µ = 0.24 mm−1 |
b = 13.4447 (7) Å | T = 295 K |
c = 8.2237 (4) Å | 0.27 × 0.19 × 0.17 mm |
β = 106.794 (2)° |
Nonius KappaCCD diffractometer | 2351 reflections with I > 2σ(I) |
9590 measured reflections | Rint = 0.051 |
3241 independent reflections |
R[F2 > 2σ(F2)] = 0.057 | 0 restraints |
wR(F2) = 0.174 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.45 e Å−3 |
3241 reflections | Δρmin = −0.38 e Å−3 |
192 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | −0.22931 (15) | −0.11377 (16) | −0.8690 (3) | 0.0489 (5) | |
C2 | −0.17013 (15) | −0.19140 (16) | −0.7859 (2) | 0.0470 (5) | |
C3 | −0.06070 (15) | −0.16847 (17) | −0.7171 (3) | 0.0494 (5) | |
C4 | 0.02377 (17) | −0.2391 (2) | −0.6205 (3) | 0.0620 (6) | |
H4A | 0.0009 | −0.2717 | −0.5322 | 0.074* | |
H4B | 0.0352 | −0.2898 | −0.6972 | 0.074* | |
C5 | 0.1254 (2) | −0.1846 (3) | −0.5417 (5) | 0.1058 (12) | |
H5A | 0.1231 | −0.1586 | −0.4328 | 0.127* | |
H5B | 0.1823 | −0.2325 | −0.5196 | 0.127* | |
C6 | 0.1505 (2) | −0.1041 (3) | −0.6378 (6) | 0.1056 (13) | |
H6A | 0.1667 | −0.1319 | −0.7362 | 0.127* | |
H6B | 0.2138 | −0.0720 | −0.5686 | 0.127* | |
C7 | 0.06661 (19) | −0.0251 (2) | −0.6990 (4) | 0.0700 (7) | |
H7A | 0.0705 | 0.0225 | −0.6088 | 0.084* | |
H7B | 0.0783 | 0.0102 | −0.7948 | 0.084* | |
C8 | −0.04015 (15) | −0.07297 (18) | −0.7510 (3) | 0.0540 (5) | |
C9 | −0.41366 (15) | −0.11662 (14) | −0.8689 (3) | 0.0449 (5) | |
C10 | −0.38494 (18) | −0.10942 (18) | −0.6915 (3) | 0.0560 (6) | |
H10 | −0.3142 | −0.1031 | −0.6314 | 0.067* | |
C11 | −0.4588 (2) | −0.1114 (2) | −0.6043 (3) | 0.0649 (6) | |
H11 | −0.4374 | −0.1062 | −0.4865 | 0.078* | |
C12 | −0.5649 (2) | −0.1210 (2) | −0.6897 (4) | 0.0703 (7) | |
H12 | −0.6145 | −0.1229 | −0.6298 | 0.084* | |
C13 | −0.59545 (18) | −0.12779 (18) | −0.8620 (4) | 0.0622 (6) | |
H13 | −0.6665 | −0.1338 | −0.9202 | 0.075* | |
C14 | −0.52138 (16) | −0.12570 (15) | −0.9526 (3) | 0.0486 (5) | |
C15 | −0.21465 (15) | −0.28666 (18) | −0.7727 (3) | 0.0519 (5) | |
N1 | −0.25004 (17) | −0.36281 (16) | −0.7606 (3) | 0.0673 (6) | |
N2 | −0.33714 (13) | −0.11309 (15) | −0.9523 (2) | 0.0524 (5) | |
H2 | −0.3569 | −0.1103 | −1.0614 | 0.063* | |
N3 | −0.56173 (15) | −0.13233 (14) | −1.1361 (3) | 0.0572 (5) | |
O1 | −0.49971 (14) | −0.12880 (15) | −1.2218 (2) | 0.0713 (5) | |
O2 | −0.65641 (14) | −0.14080 (17) | −1.2012 (3) | 0.0866 (6) | |
S1 | −0.15219 (4) | −0.01029 (5) | −0.86321 (8) | 0.0610 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0350 (10) | 0.0626 (12) | 0.0490 (11) | 0.0004 (8) | 0.0119 (8) | 0.0021 (9) |
C2 | 0.0348 (9) | 0.0602 (12) | 0.0452 (10) | 0.0001 (8) | 0.0105 (8) | 0.0005 (9) |
C3 | 0.0342 (10) | 0.0649 (12) | 0.0479 (10) | 0.0015 (8) | 0.0103 (8) | −0.0039 (9) |
C4 | 0.0414 (11) | 0.0756 (15) | 0.0637 (13) | 0.0065 (10) | 0.0066 (10) | 0.0019 (12) |
C5 | 0.0452 (15) | 0.113 (3) | 0.134 (3) | 0.0006 (15) | −0.0129 (17) | 0.017 (2) |
C6 | 0.0401 (14) | 0.111 (3) | 0.155 (4) | −0.0094 (14) | 0.0110 (17) | 0.012 (2) |
C7 | 0.0415 (11) | 0.0811 (17) | 0.0843 (17) | −0.0116 (11) | 0.0133 (11) | −0.0086 (14) |
C8 | 0.0371 (10) | 0.0652 (13) | 0.0598 (12) | −0.0011 (9) | 0.0140 (9) | −0.0044 (10) |
C9 | 0.0365 (9) | 0.0465 (10) | 0.0504 (10) | 0.0035 (7) | 0.0104 (8) | 0.0042 (8) |
C10 | 0.0433 (11) | 0.0699 (14) | 0.0537 (12) | 0.0050 (10) | 0.0123 (9) | 0.0017 (10) |
C11 | 0.0588 (14) | 0.0817 (17) | 0.0590 (13) | 0.0141 (12) | 0.0246 (11) | 0.0063 (12) |
C12 | 0.0552 (14) | 0.0834 (18) | 0.0825 (18) | 0.0101 (12) | 0.0363 (13) | 0.0121 (14) |
C13 | 0.0391 (11) | 0.0643 (14) | 0.0836 (17) | 0.0018 (9) | 0.0182 (11) | 0.0075 (12) |
C14 | 0.0375 (10) | 0.0461 (10) | 0.0590 (12) | 0.0030 (8) | 0.0088 (9) | 0.0038 (9) |
C15 | 0.0373 (10) | 0.0654 (13) | 0.0502 (11) | 0.0030 (9) | 0.0081 (8) | 0.0052 (10) |
N1 | 0.0534 (11) | 0.0684 (13) | 0.0759 (13) | −0.0033 (10) | 0.0121 (10) | 0.0102 (10) |
N2 | 0.0335 (8) | 0.0765 (12) | 0.0444 (9) | 0.0030 (8) | 0.0069 (7) | 0.0035 (8) |
N3 | 0.0420 (9) | 0.0574 (11) | 0.0631 (11) | 0.0020 (8) | 0.0010 (8) | −0.0018 (9) |
O1 | 0.0580 (10) | 0.0953 (14) | 0.0540 (9) | −0.0013 (9) | 0.0056 (8) | 0.0017 (9) |
O2 | 0.0413 (9) | 0.1135 (16) | 0.0871 (13) | 0.0028 (9) | −0.0099 (9) | −0.0141 (11) |
S1 | 0.0445 (4) | 0.0594 (4) | 0.0757 (5) | −0.0014 (2) | 0.0119 (3) | 0.0052 (3) |
C1—C2 | 1.365 (3) | C7—H7B | 0.9700 |
C1—N2 | 1.397 (2) | C8—S1 | 1.727 (2) |
C1—S1 | 1.720 (2) | C9—N2 | 1.381 (2) |
C2—C15 | 1.428 (3) | C9—C10 | 1.401 (3) |
C2—C3 | 1.432 (3) | C9—C14 | 1.402 (3) |
C3—C8 | 1.358 (3) | C10—C11 | 1.372 (3) |
C3—C4 | 1.508 (3) | C10—H10 | 0.9300 |
C4—C5 | 1.507 (4) | C11—C12 | 1.386 (4) |
C4—H4A | 0.9700 | C11—H11 | 0.9300 |
C4—H4B | 0.9700 | C12—C13 | 1.360 (4) |
C5—C6 | 1.436 (5) | C12—H12 | 0.9300 |
C5—H5A | 0.9700 | C13—C14 | 1.395 (3) |
C5—H5B | 0.9700 | C13—H13 | 0.9300 |
C6—C7 | 1.516 (4) | C14—N3 | 1.451 (3) |
C6—H6A | 0.9700 | C15—N1 | 1.143 (3) |
C6—H6B | 0.9700 | N2—H2 | 0.8600 |
C7—C8 | 1.502 (3) | N3—O2 | 1.221 (3) |
C7—H7A | 0.9700 | N3—O1 | 1.230 (3) |
C2—C1—N2 | 127.62 (19) | C6—C7—H7B | 109.7 |
C2—C1—S1 | 110.65 (15) | H7A—C7—H7B | 108.2 |
N2—C1—S1 | 121.72 (16) | C3—C8—C7 | 125.1 (2) |
C1—C2—C15 | 122.20 (18) | C3—C8—S1 | 112.21 (15) |
C1—C2—C3 | 113.87 (19) | C7—C8—S1 | 122.6 (2) |
C15—C2—C3 | 123.92 (19) | N2—C9—C10 | 119.80 (18) |
C8—C3—C2 | 111.30 (19) | N2—C9—C14 | 123.48 (19) |
C8—C3—C4 | 122.69 (19) | C10—C9—C14 | 116.71 (19) |
C2—C3—C4 | 126.0 (2) | C11—C10—C9 | 121.5 (2) |
C5—C4—C3 | 111.0 (2) | C11—C10—H10 | 119.2 |
C5—C4—H4A | 109.4 | C9—C10—H10 | 119.2 |
C3—C4—H4A | 109.4 | C10—C11—C12 | 120.8 (2) |
C5—C4—H4B | 109.4 | C10—C11—H11 | 119.6 |
C3—C4—H4B | 109.4 | C12—C11—H11 | 119.6 |
H4A—C4—H4B | 108.0 | C13—C12—C11 | 119.2 (2) |
C6—C5—C4 | 116.8 (3) | C13—C12—H12 | 120.4 |
C6—C5—H5A | 108.1 | C11—C12—H12 | 120.4 |
C4—C5—H5A | 108.1 | C12—C13—C14 | 120.7 (2) |
C6—C5—H5B | 108.1 | C12—C13—H13 | 119.6 |
C4—C5—H5B | 108.1 | C14—C13—H13 | 119.6 |
H5A—C5—H5B | 107.3 | C13—C14—C9 | 121.1 (2) |
C5—C6—C7 | 116.4 (3) | C13—C14—N3 | 116.7 (2) |
C5—C6—H6A | 108.2 | C9—C14—N3 | 122.25 (19) |
C7—C6—H6A | 108.2 | N1—C15—C2 | 179.4 (2) |
C5—C6—H6B | 108.2 | C9—N2—C1 | 123.57 (17) |
C7—C6—H6B | 108.2 | C9—N2—H2 | 118.2 |
H6A—C6—H6B | 107.3 | C1—N2—H2 | 118.2 |
C8—C7—C6 | 109.7 (2) | O2—N3—O1 | 121.8 (2) |
C8—C7—H7A | 109.7 | O2—N3—C14 | 119.0 (2) |
C6—C7—H7A | 109.7 | O1—N3—C14 | 119.12 (18) |
C8—C7—H7B | 109.7 | C1—S1—C8 | 91.95 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N1i | 0.86 | 2.48 | 3.093 (3) | 129 |
C11—H11···O1ii | 0.93 | 2.56 | 3.351 (3) | 143 |
Symmetry codes: (i) x, −y−1/2, z−1/2; (ii) x, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | C15H13N3O2S |
Mr | 299.34 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 295 |
a, b, c (Å) | 13.2764 (4), 13.4447 (7), 8.2237 (4) |
β (°) | 106.794 (2) |
V (Å3) | 1405.30 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.24 |
Crystal size (mm) | 0.27 × 0.19 × 0.17 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9590, 3241, 2351 |
Rint | 0.051 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.174, 1.06 |
No. of reflections | 3241 |
No. of parameters | 192 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.45, −0.38 |
Computer programs: COLLECT (Nonius, 1997), SCALEPACK (Otwinowski & Minor, 1997), DENZO (Otwinowski & Minor, 1997) and SCALEPACK, SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N1i | 0.86 | 2.48 | 3.093 (3) | 129 |
C11—H11···O1ii | 0.93 | 2.56 | 3.351 (3) | 143 |
Symmetry codes: (i) x, −y−1/2, z−1/2; (ii) x, y, z+1. |
Acknowledgements
This work has received partial support from CNPq, CAPES, FACEPE and FINEP.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The various uses of 2-substituted thiophenes have been well documented (Puterová et al., 2009). Amongst these applications, some 2-substituted benzo[b]thiophenes derivatives present anti-inflammatory and analgesic activities (Fakhr et al., 2008), and others are adenosine A1 allosteric enhancers (Baraldi et al., 2006). In this work, we report the structure of the title compound prepared by the reaction of 2-amino-5,6,7,8-tetrahydro-4H-cyclohepta[b]thiophene-3-carbonitrile and o-fluoro-nitrobenzene.
In the title compound, Fig. 1, the dihedral angle between least-squares planes passing through atoms of thiophene and nitrophenyl rings is 75.15 (2) °. The cyclohexane ring adopts a half-chair conformation with calculated puckering parameters of: q2 = 0.285 (5) Å, q3 = -0.240 (3) Å, QT = 0.373 (4) Å, θ = 130.2 (3) °, ϕ = -27.5 (6) ° (Cremer & Pople, 1975). In the packing, intermolecular N–H···N and C—H··· O interactions lead to the formation a supramolecular polymeric chain that extends along the c direction; Table 2 & Fig.2.