organic compounds
Bis[2-((4,6-dimethylpyrimidin-2-yl){2-[(4,6-dimethylpyrimidin-2-yl)sulfanyl]ethyl}amino)ethyl] disulfide
aShanghai Sunvea Chemical Materials Science and Technology Co Ltd, Shanghai 201611, People's Republic of China, bInstitute of Marine Materials Science and Engineering, Shanghai Maritime University, Shanghai 201306, People's Republic of China, and cDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: seikweng@um.edu.my
Bis[2-(4,6-dimethylpyrimidin-2-ylsulfanyl)ethyl]amine under hydrothermal conditions has unexpectedly been transformed into the title compound, C32H44N10S4. In the title molecule, the zigzag 3,10-diaza-6,7-disulfanyldodecyl skeleton has two dimethylpyrimidinylsulfanyl groups at both ends, and the aza atoms each carry a dimethylpyrimidinyl unit. The N atoms in the skeleton show a planar coordination.
Related literature
For the crystal structures of ligands having two 4,6-dimethylpyridimin-2-ylsulfanyl units linked to a hydrocarbon chain, see: Chen et al. (2007); Wang et al. (2007); Wu et al. (2007a,b).
Experimental
Crystal data
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Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536810035245/xu5021sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810035245/xu5021Isup2.hkl
Bis[2-(4,6-dimethylpyrimidin-2-ylsulfanyl)ethyl]amine was synthesized from the reaction of bis(2-chloroethyl)ammonium hydrochloride (1.78 g, 0.01 mol) dissolved in ethanol (100 ml) and 4,6-dimethylpyrimidine-2-thiol (2.80 g, 0.02 mol)/sodium hydroxide (0.8 g, 0.02 mol) dissolved in ethanol (200 ml). The solution was heated at 353 K for 8 h. The solvent was removed and the residue was column chromatographed with ethly acetate/petroleum ether (1/1 v/v) as
to yield a white powder; yield 63%. The formulation was confirmed by 1H NMR (CDCl3, 400 MHz) spectroscopy: 1.36–1.402(m, 1H), 2.274 (d,6H), 2.403–2.426 (d,6H), 2.813–2.871(m, 2H), 3.343–3.380 (m, 2H), 6.279 (s, 1H), 6.715 (s, 1H). This compound has not been reported in the chemical literature yet.The title compound was the unexpected product obtained in the reaction of bis(2-(4,6-dimethylpyrimidin-2-ylthio)ethyl)amine (0.175 g, 0.5 mmol), copper perchlorate (0.132 g, 0.5 mmol) and water (8 ml). The reactants were heated in a 23-ml Teflon-lined Parr reactor at 413 K for 3 days. The mixture was cooled to room temperature at a rate of 5 K h-1. The prismatic crystals were collected and washed with water; yield: 40%. MS (ESI) m/z(%): 698.2 (M+1). CH&N elemental analysis, calculated for C32H44N10S4: C 55.14, H 6.36, N 20.09%. Found: C 55.50, H 6.56, N 19.56%.
Carbon-bound H-atoms were placed in calculated positions (C—H 0.93 to 0.96 Å) and were included in the
in the riding model approximation, with U(H) set to 1.2–1.5 times Ueq(C). The final difference Fourier map had a peak in the vicinity of N6.For the ethyl portions, the carbon-carbon distance was restrained to 1.53±0.01 Å.
Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell
CrysAlis PRO (Oxford Diffraction, 2009); data reduction: CrysAlis PRO (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. Thermal ellipsoid plot (Barbour, 2001) of C32H44N10S4 at the 50% probability level; hydrogen atoms are drawn as spheres of arbitrary radius. |
C32H44N10S4 | Z = 2 |
Mr = 697.01 | F(000) = 740 |
Triclinic, P1 | Dx = 1.258 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54184 Å |
a = 11.7626 (5) Å | Cell parameters from 5344 reflections |
b = 12.7672 (6) Å | θ = 4.6–74.5° |
c = 13.7444 (7) Å | µ = 2.67 mm−1 |
α = 106.382 (4)° | T = 293 K |
β = 103.276 (4)° | Prism, colorless |
γ = 102.294 (4)° | 0.30 × 0.25 × 0.20 mm |
V = 1840.15 (17) Å3 |
Oxford Diffraction Xcalibur Sapphire 3 diffractometer | 7060 independent reflections |
Radiation source: fine-focus sealed tube | 5177 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.020 |
Detector resolution: 16.0855 pixels mm-1 | θmax = 72.6°, θmin = 4.6° |
ω scans | h = −14→11 |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | k = −15→15 |
Tmin = 0.947, Tmax = 1.000 | l = −16→16 |
11434 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.081 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.252 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.1399P)2 + 1.4306P] where P = (Fo2 + 2Fc2)/3 |
7060 reflections | (Δ/σ)max = 0.001 |
423 parameters | Δρmax = 1.45 e Å−3 |
4 restraints | Δρmin = −0.75 e Å−3 |
C32H44N10S4 | γ = 102.294 (4)° |
Mr = 697.01 | V = 1840.15 (17) Å3 |
Triclinic, P1 | Z = 2 |
a = 11.7626 (5) Å | Cu Kα radiation |
b = 12.7672 (6) Å | µ = 2.67 mm−1 |
c = 13.7444 (7) Å | T = 293 K |
α = 106.382 (4)° | 0.30 × 0.25 × 0.20 mm |
β = 103.276 (4)° |
Oxford Diffraction Xcalibur Sapphire 3 diffractometer | 7060 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | 5177 reflections with I > 2σ(I) |
Tmin = 0.947, Tmax = 1.000 | Rint = 0.020 |
11434 measured reflections |
R[F2 > 2σ(F2)] = 0.081 | 4 restraints |
wR(F2) = 0.252 | H-atom parameters constrained |
S = 1.07 | Δρmax = 1.45 e Å−3 |
7060 reflections | Δρmin = −0.75 e Å−3 |
423 parameters |
x | y | z | Uiso*/Ueq | ||
S1 | 0.74226 (10) | 0.71528 (10) | 0.39171 (9) | 0.0696 (3) | |
S2 | 0.57455 (12) | 0.67895 (10) | 0.41240 (10) | 0.0812 (4) | |
S3 | 0.96757 (10) | 0.65326 (9) | 0.03184 (10) | 0.0661 (3) | |
S4 | 0.36046 (14) | 0.95980 (10) | 0.78051 (12) | 0.0903 (5) | |
N1 | 0.6607 (3) | 0.6061 (3) | 0.1261 (3) | 0.0538 (7) | |
N2 | 0.5256 (3) | 0.4838 (3) | 0.1734 (3) | 0.0527 (7) | |
N3 | 0.6443 (3) | 0.4147 (3) | 0.0636 (2) | 0.0531 (7) | |
N4 | 0.9874 (3) | 0.8593 (3) | 0.1672 (3) | 0.0582 (8) | |
N5 | 1.0838 (3) | 0.8487 (3) | 0.0304 (3) | 0.0598 (8) | |
N6 | 0.6477 (4) | 0.9727 (4) | 0.6648 (4) | 0.0905 (14) | |
N7 | 0.7688 (3) | 1.0764 (3) | 0.5901 (3) | 0.0745 (11) | |
N8 | 0.6908 (4) | 1.1703 (3) | 0.7257 (3) | 0.0685 (10) | |
N9 | 0.3262 (4) | 0.7490 (3) | 0.6468 (3) | 0.0712 (10) | |
N10 | 0.1976 (4) | 0.7779 (3) | 0.7571 (3) | 0.0731 (10) | |
C1 | 0.7241 (4) | 0.7789 (3) | 0.2897 (3) | 0.0645 (11) | |
H1A | 0.7028 | 0.8486 | 0.3162 | 0.077* | |
H1B | 0.8021 | 0.8000 | 0.2770 | 0.077* | |
C2 | 0.6275 (4) | 0.7027 (3) | 0.1837 (3) | 0.0590 (9) | |
H2A | 0.5514 | 0.6746 | 0.1972 | 0.071* | |
H2B | 0.6132 | 0.7485 | 0.1392 | 0.071* | |
C3 | 0.6078 (3) | 0.4974 (3) | 0.1210 (3) | 0.0484 (8) | |
C4 | 0.4770 (3) | 0.3770 (3) | 0.1680 (3) | 0.0554 (9) | |
C5 | 0.3843 (5) | 0.3613 (4) | 0.2253 (4) | 0.0772 (13) | |
H5A | 0.4117 | 0.4218 | 0.2932 | 0.116* | |
H5B | 0.3743 | 0.2891 | 0.2358 | 0.116* | |
H5C | 0.3075 | 0.3628 | 0.1837 | 0.116* | |
C6 | 0.5088 (4) | 0.2862 (3) | 0.1110 (3) | 0.0588 (9) | |
H6 | 0.4739 | 0.2122 | 0.1075 | 0.071* | |
C7 | 0.5939 (3) | 0.3083 (3) | 0.0593 (3) | 0.0537 (9) | |
C8 | 0.6332 (5) | 0.2155 (4) | −0.0056 (4) | 0.0706 (11) | |
H8A | 0.7200 | 0.2308 | 0.0227 | 0.106* | |
H8B | 0.6130 | 0.2129 | −0.0782 | 0.106* | |
H8C | 0.5918 | 0.1434 | −0.0031 | 0.106* | |
C9 | 0.7418 (3) | 0.6247 (3) | 0.0630 (3) | 0.0537 (9) | |
H9A | 0.7489 | 0.6996 | 0.0571 | 0.064* | |
H9B | 0.7049 | 0.5684 | −0.0084 | 0.064* | |
C10 | 0.8697 (3) | 0.6174 (4) | 0.1083 (3) | 0.0591 (9) | |
H10A | 0.8643 | 0.5404 | 0.1081 | 0.071* | |
H10B | 0.9051 | 0.6693 | 0.1816 | 0.071* | |
C11 | 1.0171 (3) | 0.8040 (3) | 0.0842 (3) | 0.0551 (9) | |
C12 | 1.0309 (4) | 0.9735 (4) | 0.2019 (4) | 0.0638 (10) | |
C13 | 0.9967 (5) | 1.0376 (4) | 0.2947 (5) | 0.0839 (14) | |
H13A | 1.0156 | 1.0076 | 0.3511 | 0.126* | |
H13B | 0.9106 | 1.0291 | 0.2729 | 0.126* | |
H13C | 1.0418 | 1.1172 | 0.3196 | 0.126* | |
C14 | 1.1014 (4) | 1.0279 (4) | 0.1525 (4) | 0.0691 (11) | |
H14 | 1.1308 | 1.1073 | 0.1768 | 0.083* | |
C15 | 1.1274 (4) | 0.9623 (4) | 0.0662 (4) | 0.0611 (10) | |
C16 | 1.2025 (4) | 1.0147 (4) | 0.0081 (4) | 0.0761 (13) | |
H16A | 1.1798 | 0.9639 | −0.0643 | 0.114* | |
H16B | 1.2876 | 1.0277 | 0.0425 | 0.114* | |
H16C | 1.1883 | 1.0862 | 0.0088 | 0.114* | |
C17 | 0.5658 (5) | 0.8234 (6) | 0.4963 (4) | 0.112 (2) | |
H17A | 0.5790 | 0.8783 | 0.4604 | 0.134* | |
H17B | 0.4857 | 0.8149 | 0.5061 | 0.134* | |
C18 | 0.6604 (5) | 0.8636 (5) | 0.5998 (4) | 0.0878 (15) | |
H18A | 0.7409 | 0.8759 | 0.5906 | 0.105* | |
H18B | 0.6495 | 0.8076 | 0.6347 | 0.105* | |
C19 | 0.7040 (5) | 1.0778 (4) | 0.6585 (4) | 0.0789 (14) | |
C20 | 0.8330 (4) | 1.1790 (4) | 0.5960 (3) | 0.0659 (11) | |
C21 | 0.9099 (5) | 1.1770 (6) | 0.5229 (5) | 0.0984 (18) | |
H21A | 0.8579 | 1.1487 | 0.4503 | 0.148* | |
H21B | 0.9600 | 1.1280 | 0.5320 | 0.148* | |
H21C | 0.9613 | 1.2530 | 0.5393 | 0.148* | |
C22 | 0.8282 (4) | 1.2782 (4) | 0.6648 (4) | 0.0668 (11) | |
H22 | 0.8742 | 1.3490 | 0.6685 | 0.080* | |
C23 | 0.7540 (4) | 1.2708 (3) | 0.7285 (3) | 0.0590 (9) | |
C24 | 0.7415 (5) | 1.3748 (4) | 0.8051 (4) | 0.0796 (14) | |
H24A | 0.6594 | 1.3786 | 0.7827 | 0.119* | |
H24B | 0.7977 | 1.4422 | 0.8062 | 0.119* | |
H24C | 0.7595 | 1.3701 | 0.8752 | 0.119* | |
C25 | 0.5709 (5) | 0.9658 (4) | 0.7391 (4) | 0.0811 (14) | |
H25A | 0.5534 | 0.8904 | 0.7449 | 0.097* | |
H25B | 0.6147 | 1.0219 | 0.8097 | 0.097* | |
C26 | 0.4571 (4) | 0.9884 (4) | 0.6943 (5) | 0.0888 (16) | |
H26A | 0.4172 | 0.9381 | 0.6208 | 0.107* | |
H26B | 0.4727 | 1.0671 | 0.6971 | 0.107* | |
C27 | 0.2882 (4) | 0.8113 (4) | 0.7202 (4) | 0.0642 (10) | |
C28 | 0.2640 (5) | 0.6370 (4) | 0.6049 (4) | 0.0784 (13) | |
C29 | 0.3050 (7) | 0.5657 (5) | 0.5205 (5) | 0.106 (2) | |
H29A | 0.3261 | 0.6081 | 0.4762 | 0.159* | |
H29B | 0.2399 | 0.4968 | 0.4776 | 0.159* | |
H29C | 0.3751 | 0.5468 | 0.5536 | 0.159* | |
C30 | 0.1711 (6) | 0.5938 (4) | 0.6403 (5) | 0.0937 (17) | |
H30 | 0.1300 | 0.5159 | 0.6127 | 0.112* | |
C31 | 0.1387 (5) | 0.6670 (5) | 0.7175 (5) | 0.0860 (15) | |
C32 | 0.0362 (7) | 0.6270 (6) | 0.7581 (7) | 0.132 (3) | |
H32A | 0.0588 | 0.6671 | 0.8335 | 0.198* | |
H32B | 0.0197 | 0.5464 | 0.7445 | 0.198* | |
H32C | −0.0357 | 0.6419 | 0.7225 | 0.198* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0649 (6) | 0.0682 (7) | 0.0666 (7) | 0.0186 (5) | 0.0204 (5) | 0.0108 (5) |
S2 | 0.0860 (8) | 0.0554 (6) | 0.0813 (8) | −0.0002 (5) | 0.0436 (7) | −0.0057 (5) |
S3 | 0.0617 (6) | 0.0514 (5) | 0.0835 (7) | 0.0110 (4) | 0.0360 (5) | 0.0143 (5) |
S4 | 0.0995 (9) | 0.0567 (6) | 0.1033 (10) | −0.0047 (6) | 0.0636 (8) | 0.0056 (6) |
N1 | 0.0538 (17) | 0.0440 (16) | 0.0608 (18) | 0.0087 (13) | 0.0228 (15) | 0.0141 (14) |
N2 | 0.0541 (17) | 0.0459 (16) | 0.0562 (18) | 0.0106 (13) | 0.0209 (14) | 0.0152 (13) |
N3 | 0.0549 (17) | 0.0450 (16) | 0.0532 (17) | 0.0090 (13) | 0.0192 (14) | 0.0104 (13) |
N4 | 0.0518 (17) | 0.0540 (18) | 0.068 (2) | 0.0145 (14) | 0.0229 (15) | 0.0174 (15) |
N5 | 0.0507 (17) | 0.0581 (19) | 0.070 (2) | 0.0102 (15) | 0.0252 (16) | 0.0213 (16) |
N6 | 0.100 (3) | 0.061 (2) | 0.101 (3) | 0.008 (2) | 0.057 (3) | 0.005 (2) |
N7 | 0.066 (2) | 0.075 (2) | 0.067 (2) | 0.0054 (18) | 0.0332 (18) | 0.0032 (18) |
N8 | 0.079 (2) | 0.0455 (17) | 0.073 (2) | 0.0055 (16) | 0.0401 (19) | 0.0054 (16) |
N9 | 0.074 (2) | 0.054 (2) | 0.077 (2) | 0.0105 (17) | 0.0210 (19) | 0.0160 (18) |
N10 | 0.072 (2) | 0.064 (2) | 0.078 (2) | 0.0025 (18) | 0.0258 (19) | 0.0287 (19) |
C1 | 0.067 (2) | 0.0390 (19) | 0.082 (3) | 0.0097 (17) | 0.031 (2) | 0.0108 (18) |
C2 | 0.061 (2) | 0.049 (2) | 0.071 (2) | 0.0184 (17) | 0.0242 (19) | 0.0219 (18) |
C3 | 0.0443 (17) | 0.0452 (18) | 0.0489 (19) | 0.0073 (14) | 0.0111 (14) | 0.0135 (15) |
C4 | 0.051 (2) | 0.055 (2) | 0.056 (2) | 0.0070 (16) | 0.0172 (17) | 0.0192 (17) |
C5 | 0.080 (3) | 0.067 (3) | 0.096 (3) | 0.015 (2) | 0.048 (3) | 0.033 (3) |
C6 | 0.063 (2) | 0.0431 (19) | 0.066 (2) | 0.0081 (17) | 0.0184 (19) | 0.0184 (17) |
C7 | 0.054 (2) | 0.0458 (19) | 0.051 (2) | 0.0107 (16) | 0.0103 (16) | 0.0107 (15) |
C8 | 0.081 (3) | 0.050 (2) | 0.073 (3) | 0.018 (2) | 0.026 (2) | 0.010 (2) |
C9 | 0.054 (2) | 0.051 (2) | 0.057 (2) | 0.0110 (16) | 0.0187 (17) | 0.0218 (17) |
C10 | 0.056 (2) | 0.055 (2) | 0.068 (2) | 0.0122 (17) | 0.0220 (19) | 0.0270 (19) |
C11 | 0.0441 (18) | 0.054 (2) | 0.065 (2) | 0.0122 (16) | 0.0185 (17) | 0.0168 (18) |
C12 | 0.054 (2) | 0.056 (2) | 0.072 (3) | 0.0145 (18) | 0.0188 (19) | 0.012 (2) |
C13 | 0.083 (3) | 0.068 (3) | 0.095 (4) | 0.020 (2) | 0.041 (3) | 0.011 (3) |
C14 | 0.061 (2) | 0.047 (2) | 0.087 (3) | 0.0054 (18) | 0.020 (2) | 0.016 (2) |
C15 | 0.048 (2) | 0.062 (2) | 0.073 (3) | 0.0114 (17) | 0.0171 (18) | 0.027 (2) |
C16 | 0.064 (3) | 0.078 (3) | 0.089 (3) | 0.007 (2) | 0.028 (2) | 0.040 (3) |
C17 | 0.074 (3) | 0.142 (6) | 0.083 (4) | 0.004 (3) | 0.042 (3) | −0.008 (4) |
C18 | 0.099 (4) | 0.084 (3) | 0.088 (4) | 0.034 (3) | 0.035 (3) | 0.031 (3) |
C19 | 0.082 (3) | 0.056 (2) | 0.085 (3) | 0.000 (2) | 0.047 (3) | 0.002 (2) |
C20 | 0.046 (2) | 0.090 (3) | 0.061 (2) | 0.012 (2) | 0.0162 (18) | 0.032 (2) |
C21 | 0.078 (3) | 0.140 (5) | 0.105 (4) | 0.038 (3) | 0.053 (3) | 0.059 (4) |
C22 | 0.054 (2) | 0.064 (3) | 0.078 (3) | 0.0054 (19) | 0.015 (2) | 0.031 (2) |
C23 | 0.055 (2) | 0.050 (2) | 0.061 (2) | 0.0077 (17) | 0.0109 (18) | 0.0150 (17) |
C24 | 0.075 (3) | 0.044 (2) | 0.100 (4) | 0.008 (2) | 0.020 (3) | 0.009 (2) |
C25 | 0.122 (4) | 0.055 (2) | 0.060 (3) | 0.028 (3) | 0.016 (3) | 0.018 (2) |
C26 | 0.071 (3) | 0.058 (3) | 0.124 (5) | 0.009 (2) | 0.011 (3) | 0.036 (3) |
C27 | 0.064 (2) | 0.054 (2) | 0.069 (3) | 0.0066 (19) | 0.021 (2) | 0.022 (2) |
C28 | 0.082 (3) | 0.053 (2) | 0.088 (3) | 0.014 (2) | 0.013 (3) | 0.022 (2) |
C29 | 0.125 (5) | 0.063 (3) | 0.107 (4) | 0.026 (3) | 0.023 (4) | 0.008 (3) |
C30 | 0.104 (4) | 0.050 (3) | 0.104 (4) | −0.004 (3) | 0.019 (3) | 0.024 (3) |
C31 | 0.088 (3) | 0.065 (3) | 0.091 (4) | −0.005 (3) | 0.022 (3) | 0.032 (3) |
C32 | 0.127 (6) | 0.103 (5) | 0.149 (6) | −0.024 (4) | 0.059 (5) | 0.048 (5) |
S1—C1 | 1.802 (5) | C9—H9B | 0.9700 |
S1—S2 | 2.0323 (17) | C10—H10A | 0.9700 |
S2—C17 | 1.918 (7) | C10—H10B | 0.9700 |
S3—C11 | 1.764 (4) | C12—C14 | 1.382 (6) |
S3—C10 | 1.801 (4) | C12—C13 | 1.499 (6) |
S4—C27 | 1.763 (4) | C13—H13A | 0.9600 |
S4—C26 | 1.874 (6) | C13—H13B | 0.9600 |
N1—C3 | 1.369 (5) | C13—H13C | 0.9600 |
N1—C2 | 1.449 (5) | C14—C15 | 1.385 (6) |
N1—C9 | 1.456 (5) | C14—H14 | 0.9300 |
N2—C4 | 1.335 (5) | C15—C16 | 1.497 (6) |
N2—C3 | 1.343 (5) | C16—H16A | 0.9600 |
N3—C7 | 1.339 (5) | C16—H16B | 0.9600 |
N3—C3 | 1.342 (5) | C16—H16C | 0.9600 |
N4—C11 | 1.324 (5) | C17—C18 | 1.464 (6) |
N4—C12 | 1.339 (5) | C17—H17A | 0.9700 |
N5—C15 | 1.331 (5) | C17—H17B | 0.9700 |
N5—C11 | 1.343 (5) | C18—H18A | 0.9700 |
N6—C19 | 1.399 (6) | C18—H18B | 0.9700 |
N6—C18 | 1.486 (7) | C20—C22 | 1.371 (6) |
N6—C25 | 1.520 (7) | C20—C21 | 1.497 (6) |
N7—C20 | 1.336 (6) | C21—H21A | 0.9600 |
N7—C19 | 1.338 (6) | C21—H21B | 0.9600 |
N8—C23 | 1.325 (5) | C21—H21C | 0.9600 |
N8—C19 | 1.342 (5) | C22—C23 | 1.378 (6) |
N9—C27 | 1.324 (6) | C22—H22 | 0.9300 |
N9—C28 | 1.345 (6) | C23—C24 | 1.503 (6) |
N10—C27 | 1.324 (6) | C24—H24A | 0.9600 |
N10—C31 | 1.325 (6) | C24—H24B | 0.9600 |
C1—C2 | 1.526 (5) | C24—H24C | 0.9600 |
C1—H1A | 0.9700 | C25—C26 | 1.464 (6) |
C1—H1B | 0.9700 | C25—H25A | 0.9700 |
C2—H2A | 0.9700 | C25—H25B | 0.9700 |
C2—H2B | 0.9700 | C26—H26A | 0.9700 |
C4—C6 | 1.380 (6) | C26—H26B | 0.9700 |
C4—C5 | 1.498 (6) | C28—C30 | 1.369 (8) |
C5—H5A | 0.9600 | C28—C29 | 1.501 (8) |
C5—H5B | 0.9600 | C29—H29A | 0.9600 |
C5—H5C | 0.9600 | C29—H29B | 0.9600 |
C6—C7 | 1.380 (6) | C29—H29C | 0.9600 |
C6—H6 | 0.9300 | C30—C31 | 1.387 (8) |
C7—C8 | 1.497 (5) | C30—H30 | 0.9300 |
C8—H8A | 0.9600 | C31—C32 | 1.495 (8) |
C8—H8B | 0.9600 | C32—H32A | 0.9600 |
C8—H8C | 0.9600 | C32—H32B | 0.9600 |
C9—C10 | 1.524 (5) | C32—H32C | 0.9600 |
C9—H9A | 0.9700 | ||
C1—S1—S2 | 104.28 (16) | N5—C15—C14 | 120.6 (4) |
C17—S2—S1 | 104.44 (18) | N5—C15—C16 | 117.3 (4) |
C11—S3—C10 | 102.6 (2) | C14—C15—C16 | 122.1 (4) |
C27—S4—C26 | 102.5 (2) | C15—C16—H16A | 109.5 |
C3—N1—C2 | 121.5 (3) | C15—C16—H16B | 109.5 |
C3—N1—C9 | 119.8 (3) | H16A—C16—H16B | 109.5 |
C2—N1—C9 | 118.3 (3) | C15—C16—H16C | 109.5 |
C4—N2—C3 | 116.0 (3) | H16A—C16—H16C | 109.5 |
C7—N3—C3 | 116.3 (3) | H16B—C16—H16C | 109.5 |
C11—N4—C12 | 115.6 (4) | C18—C17—S2 | 108.2 (5) |
C15—N5—C11 | 116.0 (4) | C18—C17—H17A | 110.0 |
C19—N6—C18 | 121.8 (4) | S2—C17—H17A | 110.0 |
C19—N6—C25 | 121.0 (4) | C18—C17—H17B | 110.0 |
C18—N6—C25 | 117.2 (4) | S2—C17—H17B | 110.0 |
C20—N7—C19 | 115.3 (4) | H17A—C17—H17B | 108.4 |
C23—N8—C19 | 116.3 (4) | C17—C18—N6 | 107.1 (5) |
C27—N9—C28 | 115.1 (4) | C17—C18—H18A | 110.3 |
C27—N10—C31 | 115.9 (5) | N6—C18—H18A | 110.3 |
C2—C1—S1 | 114.9 (3) | C17—C18—H18B | 110.3 |
C2—C1—H1A | 108.5 | N6—C18—H18B | 110.3 |
S1—C1—H1A | 108.5 | H18A—C18—H18B | 108.6 |
C2—C1—H1B | 108.5 | N7—C19—N8 | 126.8 (4) |
S1—C1—H1B | 108.5 | N7—C19—N6 | 117.4 (4) |
H1A—C1—H1B | 107.5 | N8—C19—N6 | 115.7 (4) |
N1—C2—C1 | 113.8 (3) | N7—C20—C22 | 121.7 (4) |
N1—C2—H2A | 108.8 | N7—C20—C21 | 115.1 (5) |
C1—C2—H2A | 108.8 | C22—C20—C21 | 123.2 (5) |
N1—C2—H2B | 108.8 | C20—C21—H21A | 109.5 |
C1—C2—H2B | 108.8 | C20—C21—H21B | 109.5 |
H2A—C2—H2B | 107.7 | H21A—C21—H21B | 109.5 |
N3—C3—N2 | 126.5 (3) | C20—C21—H21C | 109.5 |
N3—C3—N1 | 116.0 (3) | H21A—C21—H21C | 109.5 |
N2—C3—N1 | 117.5 (3) | H21B—C21—H21C | 109.5 |
N2—C4—C6 | 121.8 (4) | C20—C22—C23 | 118.6 (4) |
N2—C4—C5 | 116.2 (4) | C20—C22—H22 | 120.7 |
C6—C4—C5 | 122.0 (4) | C23—C22—H22 | 120.7 |
C4—C5—H5A | 109.5 | N8—C23—C22 | 121.0 (4) |
C4—C5—H5B | 109.5 | N8—C23—C24 | 116.6 (4) |
H5A—C5—H5B | 109.5 | C22—C23—C24 | 122.4 (4) |
C4—C5—H5C | 109.5 | C23—C24—H24A | 109.5 |
H5A—C5—H5C | 109.5 | C23—C24—H24B | 109.5 |
H5B—C5—H5C | 109.5 | H24A—C24—H24B | 109.5 |
C4—C6—C7 | 118.2 (4) | C23—C24—H24C | 109.5 |
C4—C6—H6 | 120.9 | H24A—C24—H24C | 109.5 |
C7—C6—H6 | 120.9 | H24B—C24—H24C | 109.5 |
N3—C7—C6 | 121.3 (3) | C26—C25—N6 | 107.6 (4) |
N3—C7—C8 | 116.5 (4) | C26—C25—H25A | 110.2 |
C6—C7—C8 | 122.2 (4) | N6—C25—H25A | 110.2 |
C7—C8—H8A | 109.5 | C26—C25—H25B | 110.2 |
C7—C8—H8B | 109.5 | N6—C25—H25B | 110.2 |
H8A—C8—H8B | 109.5 | H25A—C25—H25B | 108.5 |
C7—C8—H8C | 109.5 | C25—C26—S4 | 104.7 (4) |
H8A—C8—H8C | 109.5 | C25—C26—H26A | 110.8 |
H8B—C8—H8C | 109.5 | S4—C26—H26A | 110.8 |
N1—C9—C10 | 114.3 (3) | C25—C26—H26B | 110.8 |
N1—C9—H9A | 108.7 | S4—C26—H26B | 110.8 |
C10—C9—H9A | 108.7 | H26A—C26—H26B | 108.9 |
N1—C9—H9B | 108.7 | N10—C27—N9 | 128.7 (4) |
C10—C9—H9B | 108.7 | N10—C27—S4 | 111.4 (3) |
H9A—C9—H9B | 107.6 | N9—C27—S4 | 119.9 (3) |
C9—C10—S3 | 111.4 (3) | N9—C28—C30 | 120.5 (5) |
C9—C10—H10A | 109.4 | N9—C28—C29 | 115.7 (5) |
S3—C10—H10A | 109.4 | C30—C28—C29 | 123.8 (5) |
C9—C10—H10B | 109.4 | C28—C29—H29A | 109.5 |
S3—C10—H10B | 109.4 | C28—C29—H29B | 109.5 |
H10A—C10—H10B | 108.0 | H29A—C29—H29B | 109.5 |
N4—C11—N5 | 127.8 (4) | C28—C29—H29C | 109.5 |
N4—C11—S3 | 120.2 (3) | H29A—C29—H29C | 109.5 |
N5—C11—S3 | 111.9 (3) | H29B—C29—H29C | 109.5 |
N4—C12—C14 | 121.1 (4) | C28—C30—C31 | 119.5 (5) |
N4—C12—C13 | 116.3 (4) | C28—C30—H30 | 120.2 |
C14—C12—C13 | 122.6 (4) | C31—C30—H30 | 120.2 |
C12—C13—H13A | 109.5 | N10—C31—C30 | 120.3 (5) |
C12—C13—H13B | 109.5 | N10—C31—C32 | 117.0 (6) |
H13A—C13—H13B | 109.5 | C30—C31—C32 | 122.8 (5) |
C12—C13—H13C | 109.5 | C31—C32—H32A | 109.5 |
H13A—C13—H13C | 109.5 | C31—C32—H32B | 109.5 |
H13B—C13—H13C | 109.5 | H32A—C32—H32B | 109.5 |
C12—C14—C15 | 118.9 (4) | C31—C32—H32C | 109.5 |
C12—C14—H14 | 120.6 | H32A—C32—H32C | 109.5 |
C15—C14—H14 | 120.6 | H32B—C32—H32C | 109.5 |
C1—S1—S2—C17 | −77.4 (3) | S1—S2—C17—C18 | −63.6 (5) |
S2—S1—C1—C2 | −59.5 (3) | S2—C17—C18—N6 | −177.4 (4) |
C3—N1—C2—C1 | 105.5 (4) | C19—N6—C18—C17 | −85.7 (7) |
C9—N1—C2—C1 | −81.3 (4) | C25—N6—C18—C17 | 94.5 (6) |
S1—C1—C2—N1 | −69.4 (4) | C20—N7—C19—N8 | 5.0 (8) |
C7—N3—C3—N2 | −0.5 (6) | C20—N7—C19—N6 | −172.1 (5) |
C7—N3—C3—N1 | 179.3 (3) | C23—N8—C19—N7 | −4.0 (8) |
C4—N2—C3—N3 | 0.7 (6) | C23—N8—C19—N6 | 173.2 (5) |
C4—N2—C3—N1 | −179.1 (3) | C18—N6—C19—N7 | 1.0 (8) |
C2—N1—C3—N3 | 178.8 (3) | C25—N6—C19—N7 | −179.2 (5) |
C9—N1—C3—N3 | 5.8 (5) | C18—N6—C19—N8 | −176.5 (5) |
C2—N1—C3—N2 | −1.3 (5) | C25—N6—C19—N8 | 3.4 (8) |
C9—N1—C3—N2 | −174.3 (3) | C19—N7—C20—C22 | −2.4 (7) |
C3—N2—C4—C6 | −0.6 (6) | C19—N7—C20—C21 | 177.2 (5) |
C3—N2—C4—C5 | −179.4 (4) | N7—C20—C22—C23 | −0.7 (7) |
N2—C4—C6—C7 | 0.4 (6) | C21—C20—C22—C23 | 179.7 (4) |
C5—C4—C6—C7 | 179.1 (4) | C19—N8—C23—C22 | 0.4 (7) |
C3—N3—C7—C6 | 0.3 (5) | C19—N8—C23—C24 | −178.9 (4) |
C3—N3—C7—C8 | 179.3 (3) | C20—C22—C23—N8 | 1.8 (7) |
C4—C6—C7—N3 | −0.2 (6) | C20—C22—C23—C24 | −179.1 (4) |
C4—C6—C7—C8 | −179.2 (4) | C19—N6—C25—C26 | 71.8 (6) |
C3—N1—C9—C10 | −77.2 (4) | C18—N6—C25—C26 | −108.3 (5) |
C2—N1—C9—C10 | 109.6 (4) | N6—C25—C26—S4 | 173.0 (3) |
N1—C9—C10—S3 | −175.1 (3) | C27—S4—C26—C25 | −86.1 (4) |
C11—S3—C10—C9 | 82.3 (3) | C31—N10—C27—N9 | 1.8 (8) |
C12—N4—C11—N5 | −0.9 (6) | C31—N10—C27—S4 | −179.1 (4) |
C12—N4—C11—S3 | 179.1 (3) | C28—N9—C27—N10 | −0.2 (7) |
C15—N5—C11—N4 | 1.5 (6) | C28—N9—C27—S4 | −179.3 (4) |
C15—N5—C11—S3 | −178.5 (3) | C26—S4—C27—N10 | −167.7 (3) |
C10—S3—C11—N4 | 5.5 (4) | C26—S4—C27—N9 | 11.5 (4) |
C10—S3—C11—N5 | −174.5 (3) | C27—N9—C28—C30 | −1.7 (7) |
C11—N4—C12—C14 | 0.4 (6) | C27—N9—C28—C29 | 179.1 (5) |
C11—N4—C12—C13 | 179.1 (4) | N9—C28—C30—C31 | 2.0 (9) |
N4—C12—C14—C15 | −0.4 (7) | C29—C28—C30—C31 | −178.9 (5) |
C13—C12—C14—C15 | −179.1 (4) | C27—N10—C31—C30 | −1.4 (8) |
C11—N5—C15—C14 | −1.4 (6) | C27—N10—C31—C32 | 179.8 (6) |
C11—N5—C15—C16 | 179.8 (4) | C28—C30—C31—N10 | −0.3 (9) |
C12—C14—C15—N5 | 1.0 (7) | C28—C30—C31—C32 | 178.4 (6) |
C12—C14—C15—C16 | 179.7 (4) |
Experimental details
Crystal data | |
Chemical formula | C32H44N10S4 |
Mr | 697.01 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 11.7626 (5), 12.7672 (6), 13.7444 (7) |
α, β, γ (°) | 106.382 (4), 103.276 (4), 102.294 (4) |
V (Å3) | 1840.15 (17) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 2.67 |
Crystal size (mm) | 0.30 × 0.25 × 0.20 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Sapphire 3 diffractometer |
Absorption correction | Multi-scan (CrysAlis RED; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.947, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11434, 7060, 5177 |
Rint | 0.020 |
(sin θ/λ)max (Å−1) | 0.619 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.081, 0.252, 1.07 |
No. of reflections | 7060 |
No. of parameters | 423 |
No. of restraints | 4 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.45, −0.75 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2010).
Acknowledgements
We thank the Special Foundation for Nano Technology of the Shanghai Committee for S&T (1052 nm00600), the Foundation of the S&T Program of Shanghai Maritime University (20100128), the State Key Laboratory of Pollution Control and Resource Reuse Foundation (PCRRF09001) and the University of Malaya for supporting this study.
References
Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191. CrossRef CAS Google Scholar
Chen, S.-K., Li, L., Tian, L. & Wu, J.-Y. (2007). Acta Cryst. E63, o1126–o1127. Web of Science CSD CrossRef IUCr Journals Google Scholar
Oxford Diffraction (2009). CrysAlis PRO and CrysAlis RED. Oxford Diffraction Ltd, Yarnton, England. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Wang, M., Cheng, L.-H. & Wang, A.-M. (2007). Acta Cryst. E63, o3296. Web of Science CSD CrossRef IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
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Wu, G.-H., Wu, X.-M., Zhang, J.-P. & Liu, T.-B. (2007b). Acta Cryst. E63, o3776. Web of Science CSD CrossRef IUCr Journals Google Scholar
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We are interested in synthesizing flexible ligands having two 4,6-dimethylpyridimin-2-ylsulfanyl units linked to a hydrocarbon chain; compounds such as 2,2'-bis(4,6-dimethylpyrimidn-2-ylsulfanyl)methane (Chen et al., 2007) and its ethane (Wu et al., 2007b), propane (Wu et al., 2007a) and butane (Wang et al., 2007) analogs have been synthesized for the purpose of studying its coordination chemistry in metal adducts. The coordination chemistry can be expanded in bis[2-(4,6-dimethylpyrimidin-2-ysulfanyl)ethyl]amine, whose synthesis has not been reported yet. However, the attempted complexation with copper ions under hydrothermal conditions yielded bis{2-[(4,6-dimethylpyrimidin-1-yl)(4,6-dimethylpyrimidin-1-ylsulfanyl-2-ethyl)amino]ethyl}disulfide (Scheme I, Fig. 1), a more interesting ligand whose exocyclic sulfur and endocyclic nitrogen sites offer many more sites for coordination.