organic compounds
(αR,4R,4aR,6aS,7R,8S,10R,11S)-Methyl α-acetoxy-4-(3-furanyl)-10-hydroxy-4a,7,9,9-tetramethyl-2,13-dioxo-1,4,4a,5,6,6a,7,8,9,10,11,12-dodecahydro-7,11-methano-2H-cycloocta[f][2]benzopyran-8-acetate (6-O-acetylswietenolide) from the seeds of Swietenia macrophylla
aInstitute of Biological Sciences, University of Malaya, 50603 Kuala Lumpur, Malaysia, and bDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: seikweng@um.edu.my
The molecule of O-acetylswietenolide, C29H36O9, isolated from the seeds of Swietenia macrophylla, features four six-membered rings connected together in the shape of a bowl; one of the inner rings adopts a twisted chair conformation owing to the C=C double bond. The furyl substitutent is connected to an outer ring, and it points away from the bowl cavity. The hydroxy group is connected to a carbonyl O atom of an adjacent molecule by an O—H⋯O hydrogen bond, generating a chain running along the b axis.
Related literature
For the absolute stereochemistry assignment, see: Bickii et al. (2000); Kadota et al. (1990); Mootoo et al. (1999); Narender et al. (2008). For another swietenolide isolated from Swietenia macrophylla, see: Goh et al. (2010).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536810039942/bt5372sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810039942/bt5372Isup2.hkl
The finely ground seeds ofSweietenia macrophylla (600 g) were soaked in ethanol at room temperature for three days. The mixture was filtered and the solvent evaporated to give a dark yellow crude material (70 g). A portion (40 g) was successively extracted with n-hexane, ethyl acetate and water to give an n-hexane-insoluble residue. The residue was partitioned between ethyl acetate-water (1:1) to give an ethyl acetate-soluble fraction (30 g, 80%).
This fraction (3 g) was subjected to
on silica gel (70–230 mesh, 300 g), with initial elution by n-hexane, followed by increasing proportions of chloroform. Eleven fractions were obtained. The fourth fraction (2 g) was further subjected to (70–230 mesh,200 g), initially eluting with n-hexane and later with acetone to give twelve fractions.The eighth fraction (600 mg) was dissolved in methanol and kept in a refrigerator. A white solid was obtained after two days, and a second crop was obtained after another two days. Recrystallization of the first crop from chloroform yielded colorless crystals of the swietenolide diacetate (yield 15 mg). The ninth fraction (80 mg) yielded O-acetylswietenolide (13 mg) after recrystalization from chloroform.
Carbon-bound H atoms were placed in calculated positions (C—H 0.95 to 1.00 Å) and were included in the
in the riding model approximation, with U(H) set to 1.2 to 1.5U(C). The hydroxy H-atom was located in a difference Fourier map, and was refined isotropically with a distance restraint of O–H 0.84±0.01 Å.2201 Friedel pairs were merged.
Sweietenia macrophylla is a large mahogany tree growing in the rainforests of Malaysia. The extracts of the seeds contain
saponins and that are commecialized in local herbal products. A previous study reports the of swietenolide diactate (Goh et al., 2010). The title compound (Scheme I, Fig. 1), which was isolated from the same plant, differs only in having a hydroxy group in place of a acetoxy group. The hydroxy group engages in O–H···O hydrogen bonding to generate a chain structure.For the absolute stereochemistry assignment, see: Bickii et al. (2000); Kadota et al. (1990); Mootoo et al. (1999); Narender et al. (2008). For another swietenolide isolated from Swietenia macrophylla, see: Goh et al. (2010).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. Anisotropic displacement ellipsoid plot (Barbour, 2001) of C29H36O9 at the 70% probability level; hydrogen atoms are drawn as spheres of arbitrary radius. |
C29H36O9 | F(000) = 564 |
Mr = 528.58 | Dx = 1.347 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 4876 reflections |
a = 11.5648 (9) Å | θ = 2.9–28.1° |
b = 8.4355 (6) Å | µ = 0.10 mm−1 |
c = 14.5082 (11) Å | T = 100 K |
β = 112.985 (1)° | Prism, colorless |
V = 1302.98 (17) Å3 | 0.35 × 0.15 × 0.05 mm |
Z = 2 |
Bruker SMART APEX diffractometer | 2952 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.034 |
Graphite monochromator | θmax = 27.5°, θmin = 1.9° |
ω scans | h = −15→15 |
12419 measured reflections | k = −10→10 |
3178 independent reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0733P)2 + 0.1429P] where P = (Fo2 + 2Fc2)/3 |
3178 reflections | (Δ/σ)max = 0.001 |
353 parameters | Δρmax = 0.27 e Å−3 |
2 restraints | Δρmin = −0.20 e Å−3 |
C29H36O9 | V = 1302.98 (17) Å3 |
Mr = 528.58 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 11.5648 (9) Å | µ = 0.10 mm−1 |
b = 8.4355 (6) Å | T = 100 K |
c = 14.5082 (11) Å | 0.35 × 0.15 × 0.05 mm |
β = 112.985 (1)° |
Bruker SMART APEX diffractometer | 2952 reflections with I > 2σ(I) |
12419 measured reflections | Rint = 0.034 |
3178 independent reflections |
R[F2 > 2σ(F2)] = 0.034 | 2 restraints |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.27 e Å−3 |
3178 reflections | Δρmin = −0.20 e Å−3 |
353 parameters |
x | y | z | Uiso*/Ueq | ||
O1 | 0.61851 (17) | 0.5009 (2) | 1.01707 (12) | 0.0283 (4) | |
O2 | 0.47929 (19) | 1.1423 (2) | 0.73073 (15) | 0.0344 (4) | |
O3 | 0.55291 (15) | 0.92107 (19) | 0.81247 (12) | 0.0198 (3) | |
O4 | 0.87219 (16) | 0.6373 (2) | 0.44745 (12) | 0.0257 (4) | |
O5 | 0.89022 (14) | 0.99908 (19) | 0.69927 (12) | 0.0200 (3) | |
H5 | 0.945 (2) | 1.059 (3) | 0.7393 (18) | 0.024 (7)* | |
O6 | 0.92901 (15) | 0.6390 (2) | 0.91487 (12) | 0.0264 (4) | |
O7 | 1.12489 (15) | 0.5429 (2) | 0.96568 (11) | 0.0224 (4) | |
O8 | 1.06597 (15) | 0.21550 (19) | 0.82808 (12) | 0.0218 (3) | |
O9 | 1.10687 (14) | 0.46053 (18) | 0.78928 (12) | 0.0169 (3) | |
C1 | 0.4977 (2) | 0.5532 (3) | 0.98089 (18) | 0.0268 (5) | |
H1 | 0.4365 | 0.5202 | 1.0054 | 0.032* | |
C2 | 0.4760 (2) | 0.6575 (3) | 0.90604 (17) | 0.0237 (5) | |
H2 | 0.3990 | 0.7097 | 0.8688 | 0.028* | |
C3 | 0.5928 (2) | 0.6741 (3) | 0.89368 (16) | 0.0184 (4) | |
C4 | 0.6748 (2) | 0.5781 (3) | 0.96307 (17) | 0.0252 (5) | |
H4 | 0.7605 | 0.5660 | 0.9730 | 0.030* | |
C5 | 0.61902 (19) | 0.7714 (3) | 0.81867 (16) | 0.0162 (4) | |
H5A | 0.7112 | 0.7937 | 0.8451 | 0.019* | |
C6 | 0.5376 (2) | 1.0223 (3) | 0.73623 (17) | 0.0200 (4) | |
C7 | 0.5993 (2) | 0.9818 (3) | 0.66575 (16) | 0.0174 (4) | |
H7A | 0.6814 | 1.0370 | 0.6892 | 0.021* | |
H7B | 0.5471 | 1.0261 | 0.5993 | 0.021* | |
C8 | 0.62213 (18) | 0.8084 (3) | 0.65186 (15) | 0.0144 (4) | |
C9 | 0.57977 (19) | 0.6948 (3) | 0.71383 (16) | 0.0156 (4) | |
C10 | 0.4363 (2) | 0.6743 (3) | 0.66379 (17) | 0.0203 (5) | |
H10A | 0.4133 | 0.6334 | 0.5957 | 0.030* | |
H10B | 0.3955 | 0.7770 | 0.6610 | 0.030* | |
H10C | 0.4088 | 0.5995 | 0.7028 | 0.030* | |
C11 | 0.6478 (2) | 0.5347 (2) | 0.72606 (16) | 0.0159 (4) | |
H11A | 0.7348 | 0.5460 | 0.7762 | 0.019* | |
H11B | 0.6046 | 0.4553 | 0.7517 | 0.019* | |
C12 | 0.6513 (2) | 0.4750 (3) | 0.62825 (16) | 0.0178 (4) | |
H12A | 0.5646 | 0.4503 | 0.5813 | 0.021* | |
H12B | 0.7002 | 0.3751 | 0.6415 | 0.021* | |
C13 | 0.70907 (19) | 0.5924 (3) | 0.57788 (16) | 0.0159 (4) | |
H13 | 0.6677 | 0.5706 | 0.5044 | 0.019* | |
C14 | 0.67811 (19) | 0.7634 (3) | 0.59133 (15) | 0.0148 (4) | |
C15 | 0.7178 (2) | 0.8800 (3) | 0.53024 (16) | 0.0183 (4) | |
H15A | 0.7045 | 0.9891 | 0.5493 | 0.022* | |
H15B | 0.6638 | 0.8655 | 0.4585 | 0.022* | |
C16 | 0.8571 (2) | 0.8611 (3) | 0.54462 (17) | 0.0186 (4) | |
H16 | 0.8712 | 0.9238 | 0.4914 | 0.022* | |
C17 | 0.8692 (2) | 0.6869 (3) | 0.52527 (16) | 0.0189 (4) | |
C18 | 0.85658 (19) | 0.5781 (3) | 0.60545 (16) | 0.0153 (4) | |
C19 | 0.8895 (2) | 0.4080 (3) | 0.58576 (17) | 0.0189 (4) | |
H19A | 0.8320 | 0.3742 | 0.5189 | 0.028* | |
H19B | 0.8813 | 0.3364 | 0.6361 | 0.028* | |
H19C | 0.9760 | 0.4050 | 0.5897 | 0.028* | |
C20 | 0.93657 (19) | 0.6467 (2) | 0.71258 (15) | 0.0125 (4) | |
H20 | 0.8750 | 0.7049 | 0.7329 | 0.015* | |
C21 | 1.03242 (19) | 0.7743 (3) | 0.71073 (16) | 0.0154 (4) | |
C22 | 0.9545 (2) | 0.9152 (3) | 0.64803 (17) | 0.0185 (4) | |
H22 | 1.0139 | 0.9906 | 0.6361 | 0.022* | |
C23 | 1.1253 (2) | 0.7223 (3) | 0.66323 (18) | 0.0211 (5) | |
H23A | 1.1843 | 0.6442 | 0.7067 | 0.032* | |
H23B | 1.1719 | 0.8149 | 0.6555 | 0.032* | |
H23C | 1.0785 | 0.6748 | 0.5975 | 0.032* | |
C24 | 1.1129 (2) | 0.8349 (3) | 0.81604 (17) | 0.0198 (5) | |
H24A | 1.1701 | 0.7508 | 0.8541 | 0.030* | |
H24B | 1.0582 | 0.8656 | 0.8503 | 0.030* | |
H24C | 1.1618 | 0.9270 | 0.8110 | 0.030* | |
C25 | 0.99178 (19) | 0.5175 (2) | 0.79253 (15) | 0.0146 (4) | |
H25 | 0.9310 | 0.4271 | 0.7753 | 0.018* | |
C26 | 1.0111 (2) | 0.5757 (3) | 0.89756 (16) | 0.0179 (4) | |
C27 | 1.1475 (3) | 0.5980 (4) | 1.06570 (19) | 0.0352 (7) | |
H27A | 1.2382 | 0.6054 | 1.1047 | 0.053* | |
H27B | 1.1105 | 0.5233 | 1.0982 | 0.053* | |
H27C | 1.1092 | 0.7027 | 1.0620 | 0.053* | |
C28 | 1.1339 (2) | 0.3050 (3) | 0.80775 (16) | 0.0166 (4) | |
C29 | 1.2531 (2) | 0.2641 (3) | 0.79648 (18) | 0.0216 (5) | |
H29A | 1.2356 | 0.2438 | 0.7258 | 0.032* | |
H29B | 1.2898 | 0.1691 | 0.8359 | 0.032* | |
H29C | 1.3123 | 0.3526 | 0.8204 | 0.032* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0289 (9) | 0.0383 (10) | 0.0209 (8) | −0.0019 (8) | 0.0133 (7) | 0.0061 (7) |
O2 | 0.0402 (11) | 0.0271 (9) | 0.0458 (11) | 0.0131 (9) | 0.0274 (9) | 0.0032 (9) |
O3 | 0.0224 (8) | 0.0193 (7) | 0.0225 (8) | −0.0008 (6) | 0.0140 (7) | −0.0051 (6) |
O4 | 0.0284 (9) | 0.0365 (9) | 0.0172 (8) | 0.0106 (8) | 0.0142 (7) | 0.0037 (7) |
O5 | 0.0157 (7) | 0.0171 (7) | 0.0276 (9) | 0.0008 (6) | 0.0090 (7) | 0.0000 (6) |
O6 | 0.0182 (8) | 0.0465 (10) | 0.0158 (8) | 0.0061 (8) | 0.0079 (6) | −0.0018 (8) |
O7 | 0.0201 (8) | 0.0307 (9) | 0.0139 (7) | 0.0063 (7) | 0.0038 (6) | 0.0016 (7) |
O8 | 0.0229 (8) | 0.0159 (7) | 0.0267 (9) | 0.0003 (6) | 0.0097 (7) | 0.0020 (7) |
O9 | 0.0141 (7) | 0.0146 (7) | 0.0230 (8) | 0.0029 (6) | 0.0084 (6) | 0.0025 (6) |
C1 | 0.0251 (11) | 0.0347 (13) | 0.0254 (12) | −0.0046 (10) | 0.0150 (10) | −0.0012 (10) |
C2 | 0.0208 (11) | 0.0304 (12) | 0.0249 (12) | −0.0033 (10) | 0.0142 (9) | −0.0012 (10) |
C3 | 0.0196 (10) | 0.0231 (11) | 0.0150 (10) | −0.0037 (9) | 0.0096 (8) | −0.0058 (8) |
C4 | 0.0219 (11) | 0.0363 (13) | 0.0198 (11) | −0.0019 (10) | 0.0105 (9) | 0.0025 (10) |
C5 | 0.0134 (9) | 0.0197 (10) | 0.0170 (10) | −0.0018 (8) | 0.0077 (8) | −0.0030 (8) |
C6 | 0.0172 (10) | 0.0220 (10) | 0.0223 (11) | 0.0000 (9) | 0.0095 (9) | −0.0044 (9) |
C7 | 0.0158 (10) | 0.0195 (10) | 0.0182 (10) | 0.0031 (8) | 0.0081 (8) | 0.0009 (8) |
C8 | 0.0081 (9) | 0.0189 (10) | 0.0132 (10) | 0.0018 (7) | 0.0010 (7) | −0.0003 (8) |
C9 | 0.0116 (9) | 0.0203 (10) | 0.0151 (9) | −0.0016 (8) | 0.0053 (8) | −0.0032 (8) |
C10 | 0.0137 (10) | 0.0282 (12) | 0.0199 (10) | −0.0035 (9) | 0.0076 (8) | −0.0071 (9) |
C11 | 0.0161 (9) | 0.0175 (10) | 0.0167 (10) | −0.0035 (8) | 0.0094 (8) | −0.0018 (8) |
C12 | 0.0165 (10) | 0.0189 (10) | 0.0200 (10) | −0.0024 (8) | 0.0091 (8) | −0.0044 (8) |
C13 | 0.0116 (9) | 0.0201 (10) | 0.0152 (10) | 0.0017 (8) | 0.0045 (8) | −0.0032 (8) |
C14 | 0.0105 (9) | 0.0203 (10) | 0.0124 (9) | 0.0026 (8) | 0.0031 (7) | 0.0008 (8) |
C15 | 0.0147 (10) | 0.0249 (10) | 0.0156 (10) | 0.0057 (9) | 0.0063 (8) | 0.0051 (9) |
C16 | 0.0183 (11) | 0.0241 (11) | 0.0182 (10) | 0.0055 (8) | 0.0123 (9) | 0.0081 (9) |
C17 | 0.0136 (10) | 0.0274 (11) | 0.0172 (10) | 0.0050 (8) | 0.0077 (8) | 0.0045 (9) |
C18 | 0.0131 (9) | 0.0193 (10) | 0.0146 (9) | 0.0019 (8) | 0.0066 (8) | 0.0007 (8) |
C19 | 0.0188 (10) | 0.0228 (11) | 0.0174 (10) | 0.0027 (9) | 0.0096 (9) | −0.0033 (8) |
C20 | 0.0108 (8) | 0.0141 (9) | 0.0127 (9) | 0.0029 (7) | 0.0045 (7) | 0.0010 (7) |
C21 | 0.0129 (9) | 0.0161 (9) | 0.0201 (10) | 0.0013 (8) | 0.0096 (8) | 0.0029 (8) |
C22 | 0.0154 (10) | 0.0159 (10) | 0.0260 (11) | 0.0030 (8) | 0.0102 (9) | 0.0068 (8) |
C23 | 0.0134 (10) | 0.0234 (10) | 0.0303 (12) | 0.0039 (8) | 0.0126 (9) | 0.0074 (9) |
C24 | 0.0148 (10) | 0.0168 (10) | 0.0259 (12) | −0.0007 (8) | 0.0058 (9) | 0.0002 (8) |
C25 | 0.0127 (9) | 0.0145 (9) | 0.0173 (10) | 0.0012 (8) | 0.0065 (8) | 0.0014 (8) |
C26 | 0.0169 (10) | 0.0218 (10) | 0.0157 (10) | −0.0007 (9) | 0.0071 (8) | 0.0028 (8) |
C27 | 0.0271 (13) | 0.0530 (18) | 0.0161 (11) | 0.0144 (13) | −0.0017 (10) | −0.0026 (11) |
C28 | 0.0178 (10) | 0.0147 (10) | 0.0139 (10) | 0.0019 (8) | 0.0026 (8) | −0.0014 (8) |
C29 | 0.0183 (10) | 0.0187 (10) | 0.0276 (12) | 0.0055 (9) | 0.0089 (9) | −0.0002 (9) |
O1—C1 | 1.360 (3) | C12—H12B | 0.9900 |
O1—C4 | 1.364 (3) | C13—C14 | 1.518 (3) |
O2—C6 | 1.202 (3) | C13—C18 | 1.597 (3) |
O3—C6 | 1.353 (3) | C13—H13 | 1.0000 |
O3—C5 | 1.461 (3) | C14—C15 | 1.510 (3) |
O4—C17 | 1.217 (3) | C15—C16 | 1.550 (3) |
O5—C22 | 1.427 (3) | C15—H15A | 0.9900 |
O5—H5 | 0.84 (1) | C15—H15B | 0.9900 |
O6—C26 | 1.198 (3) | C16—C17 | 1.513 (3) |
O7—C26 | 1.330 (3) | C16—C22 | 1.552 (3) |
O7—C27 | 1.447 (3) | C16—H16 | 1.0000 |
O8—C28 | 1.206 (3) | C17—C18 | 1.533 (3) |
O9—C28 | 1.351 (3) | C18—C19 | 1.540 (3) |
O9—C25 | 1.433 (2) | C18—C20 | 1.576 (3) |
C1—C2 | 1.343 (4) | C19—H19A | 0.9800 |
C1—H1 | 0.9500 | C19—H19B | 0.9800 |
C2—C3 | 1.438 (3) | C19—H19C | 0.9800 |
C2—H2 | 0.9500 | C20—C25 | 1.537 (3) |
C3—C4 | 1.350 (3) | C20—C21 | 1.553 (3) |
C3—C5 | 1.486 (3) | C20—H20 | 1.0000 |
C4—H4 | 0.9500 | C21—C24 | 1.533 (3) |
C5—C9 | 1.548 (3) | C21—C23 | 1.549 (3) |
C5—H5A | 1.0000 | C21—C22 | 1.553 (3) |
C6—C7 | 1.497 (3) | C22—H22 | 1.0000 |
C7—C8 | 1.513 (3) | C23—H23A | 0.9800 |
C7—H7A | 0.9900 | C23—H23B | 0.9800 |
C7—H7B | 0.9900 | C23—H23C | 0.9800 |
C8—C14 | 1.333 (3) | C24—H24A | 0.9800 |
C8—C9 | 1.520 (3) | C24—H24B | 0.9800 |
C9—C11 | 1.538 (3) | C24—H24C | 0.9800 |
C9—C10 | 1.539 (3) | C25—C26 | 1.532 (3) |
C10—H10A | 0.9800 | C25—H25 | 1.0000 |
C10—H10B | 0.9800 | C27—H27A | 0.9800 |
C10—H10C | 0.9800 | C27—H27B | 0.9800 |
C11—C12 | 1.521 (3) | C27—H27C | 0.9800 |
C11—H11A | 0.9900 | C28—C29 | 1.490 (3) |
C11—H11B | 0.9900 | C29—H29A | 0.9800 |
C12—C13 | 1.530 (3) | C29—H29B | 0.9800 |
C12—H12A | 0.9900 | C29—H29C | 0.9800 |
C1—O1—C4 | 105.78 (19) | C17—C16—C22 | 112.35 (18) |
C6—O3—C5 | 119.61 (16) | C15—C16—C22 | 115.07 (18) |
C22—O5—H5 | 104 (2) | C17—C16—H16 | 108.4 |
C26—O7—C27 | 114.67 (18) | C15—C16—H16 | 108.4 |
C28—O9—C25 | 117.71 (17) | C22—C16—H16 | 108.4 |
C2—C1—O1 | 111.4 (2) | O4—C17—C16 | 123.0 (2) |
C2—C1—H1 | 124.3 | O4—C17—C18 | 122.9 (2) |
O1—C1—H1 | 124.3 | C16—C17—C18 | 113.45 (18) |
C1—C2—C3 | 106.0 (2) | C17—C18—C19 | 108.29 (17) |
C1—C2—H2 | 127.0 | C17—C18—C20 | 109.63 (18) |
C3—C2—H2 | 127.0 | C19—C18—C20 | 115.63 (17) |
C4—C3—C2 | 105.6 (2) | C17—C18—C13 | 100.00 (16) |
C4—C3—C5 | 126.4 (2) | C19—C18—C13 | 109.91 (18) |
C2—C3—C5 | 128.0 (2) | C20—C18—C13 | 112.19 (16) |
C3—C4—O1 | 111.2 (2) | C18—C19—H19A | 109.5 |
C3—C4—H4 | 124.4 | C18—C19—H19B | 109.5 |
O1—C4—H4 | 124.4 | H19A—C19—H19B | 109.5 |
O3—C5—C3 | 105.74 (16) | C18—C19—H19C | 109.5 |
O3—C5—C9 | 110.76 (17) | H19A—C19—H19C | 109.5 |
C3—C5—C9 | 115.06 (18) | H19B—C19—H19C | 109.5 |
O3—C5—H5A | 108.4 | C25—C20—C21 | 114.55 (16) |
C3—C5—H5A | 108.4 | C25—C20—C18 | 113.28 (17) |
C9—C5—H5A | 108.4 | C21—C20—C18 | 112.67 (16) |
O2—C6—O3 | 118.5 (2) | C25—C20—H20 | 105.1 |
O2—C6—C7 | 123.5 (2) | C21—C20—H20 | 105.1 |
O3—C6—C7 | 117.99 (19) | C18—C20—H20 | 105.1 |
C6—C7—C8 | 117.74 (19) | C24—C21—C23 | 106.33 (18) |
C6—C7—H7A | 107.9 | C24—C21—C20 | 111.93 (17) |
C8—C7—H7A | 107.9 | C23—C21—C20 | 115.78 (18) |
C6—C7—H7B | 107.9 | C24—C21—C22 | 108.43 (18) |
C8—C7—H7B | 107.9 | C23—C21—C22 | 107.51 (17) |
H7A—C7—H7B | 107.2 | C20—C21—C22 | 106.60 (16) |
C14—C8—C7 | 121.15 (19) | O5—C22—C16 | 108.69 (17) |
C14—C8—C9 | 124.17 (19) | O5—C22—C21 | 112.06 (17) |
C7—C8—C9 | 114.66 (17) | C16—C22—C21 | 112.18 (18) |
C8—C9—C11 | 110.70 (16) | O5—C22—H22 | 107.9 |
C8—C9—C10 | 109.21 (18) | C16—C22—H22 | 107.9 |
C11—C9—C10 | 111.35 (18) | C21—C22—H22 | 107.9 |
C8—C9—C5 | 106.23 (16) | C21—C23—H23A | 109.5 |
C11—C9—C5 | 108.21 (17) | C21—C23—H23B | 109.5 |
C10—C9—C5 | 111.03 (17) | H23A—C23—H23B | 109.5 |
C9—C10—H10A | 109.5 | C21—C23—H23C | 109.5 |
C9—C10—H10B | 109.5 | H23A—C23—H23C | 109.5 |
H10A—C10—H10B | 109.5 | H23B—C23—H23C | 109.5 |
C9—C10—H10C | 109.5 | C21—C24—H24A | 109.5 |
H10A—C10—H10C | 109.5 | C21—C24—H24B | 109.5 |
H10B—C10—H10C | 109.5 | H24A—C24—H24B | 109.5 |
C12—C11—C9 | 112.46 (17) | C21—C24—H24C | 109.5 |
C12—C11—H11A | 109.1 | H24A—C24—H24C | 109.5 |
C9—C11—H11A | 109.1 | H24B—C24—H24C | 109.5 |
C12—C11—H11B | 109.1 | O9—C25—C26 | 111.32 (17) |
C9—C11—H11B | 109.1 | O9—C25—C20 | 109.29 (16) |
H11A—C11—H11B | 107.8 | C26—C25—C20 | 112.31 (17) |
C11—C12—C13 | 114.02 (17) | O9—C25—H25 | 107.9 |
C11—C12—H12A | 108.7 | C26—C25—H25 | 107.9 |
C13—C12—H12A | 108.7 | C20—C25—H25 | 107.9 |
C11—C12—H12B | 108.7 | O6—C26—O7 | 124.9 (2) |
C13—C12—H12B | 108.7 | O6—C26—C25 | 122.11 (19) |
H12A—C12—H12B | 107.6 | O7—C26—C25 | 112.95 (18) |
C14—C13—C12 | 112.65 (17) | O7—C27—H27A | 109.5 |
C14—C13—C18 | 108.77 (17) | O7—C27—H27B | 109.5 |
C12—C13—C18 | 117.01 (18) | H27A—C27—H27B | 109.5 |
C14—C13—H13 | 105.9 | O7—C27—H27C | 109.5 |
C12—C13—H13 | 105.9 | H27A—C27—H27C | 109.5 |
C18—C13—H13 | 105.9 | H27B—C27—H27C | 109.5 |
C8—C14—C15 | 122.6 (2) | O8—C28—O9 | 122.2 (2) |
C8—C14—C13 | 123.70 (19) | O8—C28—C29 | 126.9 (2) |
C15—C14—C13 | 113.74 (17) | O9—C28—C29 | 110.79 (19) |
C14—C15—C16 | 113.10 (17) | C28—C29—H29A | 109.5 |
C14—C15—H15A | 109.0 | C28—C29—H29B | 109.5 |
C16—C15—H15A | 109.0 | H29A—C29—H29B | 109.5 |
C14—C15—H15B | 109.0 | C28—C29—H29C | 109.5 |
C16—C15—H15B | 109.0 | H29A—C29—H29C | 109.5 |
H15A—C15—H15B | 107.8 | H29B—C29—H29C | 109.5 |
C17—C16—C15 | 103.94 (19) | ||
C4—O1—C1—C2 | 0.9 (3) | C15—C16—C17—C18 | −68.0 (2) |
O1—C1—C2—C3 | −0.4 (3) | C22—C16—C17—C18 | 57.1 (2) |
C1—C2—C3—C4 | −0.3 (3) | O4—C17—C18—C19 | 17.1 (3) |
C1—C2—C3—C5 | 177.9 (2) | C16—C17—C18—C19 | −171.89 (18) |
C2—C3—C4—O1 | 0.9 (3) | O4—C17—C18—C20 | 144.1 (2) |
C5—C3—C4—O1 | −177.3 (2) | C16—C17—C18—C20 | −44.9 (2) |
C1—O1—C4—C3 | −1.1 (3) | O4—C17—C18—C13 | −97.9 (2) |
C6—O3—C5—C3 | −166.70 (18) | C16—C17—C18—C13 | 73.1 (2) |
C6—O3—C5—C9 | −41.4 (2) | C14—C13—C18—C17 | −62.5 (2) |
C4—C3—C5—O3 | −140.9 (2) | C12—C13—C18—C17 | 168.46 (18) |
C2—C3—C5—O3 | 41.3 (3) | C14—C13—C18—C19 | −176.26 (17) |
C4—C3—C5—C9 | 96.5 (3) | C12—C13—C18—C19 | 54.7 (2) |
C2—C3—C5—C9 | −81.3 (3) | C14—C13—C18—C20 | 53.6 (2) |
C5—O3—C6—O2 | 177.6 (2) | C12—C13—C18—C20 | −75.4 (2) |
C5—O3—C6—C7 | −5.1 (3) | C17—C18—C20—C25 | −147.54 (17) |
O2—C6—C7—C8 | −155.4 (2) | C19—C18—C20—C25 | −24.8 (2) |
O3—C6—C7—C8 | 27.5 (3) | C13—C18—C20—C25 | 102.3 (2) |
C6—C7—C8—C14 | −179.1 (2) | C17—C18—C20—C21 | −15.5 (2) |
C6—C7—C8—C9 | −0.7 (3) | C19—C18—C20—C21 | 107.2 (2) |
C14—C8—C9—C11 | 19.3 (3) | C13—C18—C20—C21 | −125.63 (18) |
C7—C8—C9—C11 | −159.00 (18) | C25—C20—C21—C24 | −46.3 (2) |
C14—C8—C9—C10 | −103.6 (2) | C18—C20—C21—C24 | −177.77 (17) |
C7—C8—C9—C10 | 78.1 (2) | C25—C20—C21—C23 | 75.7 (2) |
C14—C8—C9—C5 | 136.6 (2) | C18—C20—C21—C23 | −55.7 (2) |
C7—C8—C9—C5 | −41.7 (2) | C25—C20—C21—C22 | −164.74 (17) |
O3—C5—C9—C8 | 63.6 (2) | C18—C20—C21—C22 | 63.8 (2) |
C3—C5—C9—C8 | −176.52 (18) | C17—C16—C22—O5 | −129.80 (18) |
O3—C5—C9—C11 | −177.45 (16) | C15—C16—C22—O5 | −11.1 (2) |
C3—C5—C9—C11 | −57.6 (2) | C17—C16—C22—C21 | −5.3 (2) |
O3—C5—C9—C10 | −55.0 (2) | C15—C16—C22—C21 | 113.3 (2) |
C3—C5—C9—C10 | 64.9 (2) | C24—C21—C22—O5 | −49.9 (2) |
C8—C9—C11—C12 | −45.1 (2) | C23—C21—C22—O5 | −164.50 (18) |
C10—C9—C11—C12 | 76.6 (2) | C20—C21—C22—O5 | 70.7 (2) |
C5—C9—C11—C12 | −161.11 (17) | C24—C21—C22—C16 | −172.51 (17) |
C9—C11—C12—C13 | 55.3 (2) | C23—C21—C22—C16 | 72.9 (2) |
C11—C12—C13—C14 | −35.6 (3) | C20—C21—C22—C16 | −51.8 (2) |
C11—C12—C13—C18 | 91.5 (2) | C28—O9—C25—C26 | 90.9 (2) |
C7—C8—C14—C15 | −2.3 (3) | C28—O9—C25—C20 | −144.50 (18) |
C9—C8—C14—C15 | 179.45 (19) | C21—C20—C25—O9 | −47.2 (2) |
C7—C8—C14—C13 | 177.06 (19) | C18—C20—C25—O9 | 84.0 (2) |
C9—C8—C14—C13 | −1.2 (3) | C21—C20—C25—C26 | 76.9 (2) |
C12—C13—C14—C8 | 8.9 (3) | C18—C20—C25—C26 | −151.96 (17) |
C18—C13—C14—C8 | −122.5 (2) | C27—O7—C26—O6 | −3.3 (4) |
C12—C13—C14—C15 | −171.68 (18) | C27—O7—C26—C25 | 179.2 (2) |
C18—C13—C14—C15 | 56.9 (2) | O9—C25—C26—O6 | 174.3 (2) |
C8—C14—C15—C16 | 127.9 (2) | C20—C25—C26—O6 | 51.4 (3) |
C13—C14—C15—C16 | −51.6 (3) | O9—C25—C26—O7 | −8.1 (3) |
C14—C15—C16—C17 | 52.2 (2) | C20—C25—C26—O7 | −131.01 (19) |
C14—C15—C16—C22 | −71.1 (2) | C25—O9—C28—O8 | −1.2 (3) |
C15—C16—C17—O4 | 103.1 (2) | C25—O9—C28—C29 | 177.21 (17) |
C22—C16—C17—O4 | −131.9 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5···O8i | 0.84 (1) | 1.99 (1) | 2.827 (2) | 175 (3) |
Symmetry code: (i) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C29H36O9 |
Mr | 528.58 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 11.5648 (9), 8.4355 (6), 14.5082 (11) |
β (°) | 112.985 (1) |
V (Å3) | 1302.98 (17) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.35 × 0.15 × 0.05 |
Data collection | |
Diffractometer | Bruker SMART APEX |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12419, 3178, 2952 |
Rint | 0.034 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.100, 1.00 |
No. of reflections | 3178 |
No. of parameters | 353 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.27, −0.20 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5···O8i | 0.84 (1) | 1.99 (1) | 2.827 (2) | 175 (3) |
Symmetry code: (i) x, y+1, z. |
Acknowledgements
We thank the University of Malaya for supporting this study.
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Sweietenia macrophylla is a large mahogany tree growing in the rainforests of Malaysia. The extracts of the seeds contain flavonoids, saponins and alkaloids that are commecialized in local herbal products. A previous study reports the crystal structure of swietenolide diactate (Goh et al., 2010). The title compound (Scheme I, Fig. 1), which was isolated from the same plant, differs only in having a hydroxy group in place of a acetoxy group. The hydroxy group engages in O–H···O hydrogen bonding to generate a chain structure.