organic compounds
2-Amino-5-methylpyridinium 1H-pyrazole-3,5-dicarboxylate trihydrate
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title compound, 2C6H9N2+·C5H2N2O42−·3H2O, the 1H-pyrazole-3,5-dicarboxylate anion is close to planar [maximum deviation = 0.208 (1) Å]. The two distinct 2-amino-5-methylpyridinium cations are also almost planar, with maximum deviations of 0.018 (2) and 0.014 (2) Å. In the crystal, pairs of intermolecular N—H⋯O and O—H⋯O hydrogen bonds connect neighbouring molecules into dimers, generating R22(8) and R24(8) ring motifs, respectively. Further intermolecular N—H⋯O, O—H⋯O and C—H⋯O hydrogen bonds link the molecules into a three-dimensional network.
Related literature
For background to the chemistry of substituted pyridines, see: Pozharski et al. (1997); Katritzky et al. (1996). For details of hydrogen bonding, see: Jeffrey & Saenger (1991); Jeffrey (1997); Scheiner (1997). For hydrogen-bond motifs, see: Bernstein et al. (1995). For bond-length data, see: Allen et al. (1987). For related structures, see; Xia et al. (2007); King et al. (2004). For details and applications of pyrazole-3,5-dicarboxylic acid, see: Lee et al. (1989); Chambers et al. (1985); Pan et al. (2000); Pan, Ching et al. (2001); Pan, Frydel et al. (2001).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810041644/hb5681sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810041644/hb5681Isup2.hkl
A hot methanol/water solution (10/10 ml) of 2-amino-5-methylpyridine (54 mg, Aldrich) and pyrazole-3,5-dicarboxylic acid (78 mg, Merck) were mixed and warmed over a heating magnetic stirrer for a few minutes. The resulting solution was allowed to cool slowly at room temperature and colourless blocks of (I) appeared after a few days.
The hydrogen atoms bound to O atoms were located in a difference map and constrained to ride with their parent atoms, with Uiso(H) = 1.5Uiso(O) [O—H = 0.85 (2)–0.889 (18) Å]. The hydrogen atoms bound to N atoms were located in a difference map and were refined freely [N—H = 0.863 (18)–0.943 (18) Å]. All other H atoms to C were positioned geometrically [range of C—H = 0.93–0.96 Å] with Uiso(H) = 1.2 or 1.5Uiso(C).
Pyridine and its derivatives play an important role in heterocyclic chemistry (Pozharski et al., 1997; Katritzky et al., 1996). They are often involved in hydrogen-bond interactions (Jeffrey & Saenger, 1991; Jeffrey, 1997; Scheiner, 1997). Pyrazole-related molecules have attracted considerable attention due to their biological activities (Lee et al., 1989; Chambers et al., 1985). 3,5-Pyrazole dicarboxylic acid (H2PzDCA) is a multifunctional ligand; it has multiple coordination sites that allow structures of higher dimensions and it also has abstractable protons that allow various acidity-dependent coordination modes (Pan et al., 2000). A variety of H2PzDCA coordination compounds have been synthesized and reported in the literature (Pan, Ching et al., 2001; Pan, Frydel et al., 2001). Since our aim is to study some interesting hydrogen-bonding interactions, the
of the title compound is presented here.The
of the title compound, (Fig. 1), consists of two 2-amino-5-methylpyridinium cations, a 1H-pyrazole-3-5-dicarboxylate anion and three water molecules. The 1H-pyrazole-3,5-dicarboxylate anion and 2-amino-5-methylpyridinium cations are approximately planar with a maximum deviations of 0.208 (1) Å at atom O2 and 0.018 (2) Å at atoms N4A, C11A and 0.014 (2) Å at atom N4B. The torsion angles (O2/C2/C1/N1), (C1–C3/O1), (C3–C5/O3) and (N2/C4/C5/04) are 8.81 (15), 10.46 (16), 4.89 (15) and 4.60 (16)°, respectively. Bond lengths (Allen et al., 1987) and angles are normal and comparable to those related structures (Xia et al., 2007; King et al., 2004).In the crystal packing (Fig. 2), intermolecular N2—H1N2···O4, N4A—H3NA···O1W, N3B—H1NB···O3, N4B—H2NB···O4, N4B—H3NB···O3W, N3A—H1NA···O2, N4A—H2NA···O1, O1W—H1W1···O3, O1W—H2W1···O3W, O2W—H1W2···O1, O2W—H2W2···O1, O3W—H1W3···O2, O3W—H2W3···O2W and C10—H10A···O2W hydrogen bonds (Table 1) link the molecules into three-dimensional network. Within this network, pairs of intermolecular N3B—H1NB···O3, N4A—H2NA···O1 and O1—H1W2···O2W, O2W—H1W2···O1 hydrogen bonds connect neighbouring molecules to form dimers, generating R22(8) and R24(8) (Bernstein et al., 1995) ring motifs, respectively.
For background to the chemistry of substituted pyridines, see: Pozharski et al. (1997); Katritzky et al. (1996). For details of hydrogen bonding, see: Jeffrey & Saenger (1991); Jeffrey (1997); Scheiner (1997). For hydrogen-bond motifs, see: Bernstein et al. (1995). For bond-length data, see: Allen et al. (1987). For related structures, see; Xia et al. (2007); King et al. (2004). For details and applications of pyrazole-3,5-dicarboxylic acid, see: Lee et al. (1989); Chambers et al. (1985); Pan et al. (2000); Pan, Ching et al. (2001); Pan, Frydel et al. (2001).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids. | |
Fig. 2. The crystal packing of the title compound, viewed along b axis. Intermolecular hydrogen bonds linked the molecules into three-dimensional network. |
2C6H9N2+·C5H2N2O42−·3H2O | Z = 2 |
Mr = 426.44 | F(000) = 452 |
Triclinic, P1 | Dx = 1.346 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.8985 (1) Å | Cell parameters from 9892 reflections |
b = 9.2195 (1) Å | θ = 2.4–35.1° |
c = 15.3922 (2) Å | µ = 0.11 mm−1 |
α = 101.942 (1)° | T = 100 K |
β = 93.883 (1)° | Block, colourless |
γ = 104.648 (1)° | 0.47 × 0.24 × 0.21 mm |
V = 1052.40 (2) Å3 |
Bruker SMART APEXII CCD diffractometer | 6103 independent reflections |
Radiation source: fine-focus sealed tube | 5085 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
φ and ω scans | θmax = 30.0°, θmin = 2.4° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −11→11 |
Tmin = 0.952, Tmax = 0.978 | k = −12→12 |
26056 measured reflections | l = −21→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.113 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0569P)2 + 0.2775P] where P = (Fo2 + 2Fc2)/3 |
6103 reflections | (Δ/σ)max < 0.001 |
325 parameters | Δρmax = 0.44 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
2C6H9N2+·C5H2N2O42−·3H2O | γ = 104.648 (1)° |
Mr = 426.44 | V = 1052.40 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.8985 (1) Å | Mo Kα radiation |
b = 9.2195 (1) Å | µ = 0.11 mm−1 |
c = 15.3922 (2) Å | T = 100 K |
α = 101.942 (1)° | 0.47 × 0.24 × 0.21 mm |
β = 93.883 (1)° |
Bruker SMART APEXII CCD diffractometer | 6103 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 5085 reflections with I > 2σ(I) |
Tmin = 0.952, Tmax = 0.978 | Rint = 0.026 |
26056 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.113 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.44 e Å−3 |
6103 reflections | Δρmin = −0.24 e Å−3 |
325 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.68720 (11) | 0.64094 (9) | 0.43780 (5) | 0.02004 (16) | |
O2 | 0.63845 (11) | 0.84955 (9) | 0.40067 (5) | 0.02212 (17) | |
O3 | 0.70719 (11) | 0.24170 (9) | 0.10667 (5) | 0.02152 (17) | |
O4 | 0.58424 (10) | 0.33899 (9) | 0.00540 (5) | 0.01827 (16) | |
N1 | 0.56503 (12) | 0.68973 (10) | 0.21937 (6) | 0.01756 (18) | |
N2 | 0.56444 (12) | 0.58634 (10) | 0.14333 (6) | 0.01631 (17) | |
C1 | 0.65092 (14) | 0.71292 (12) | 0.38074 (7) | 0.01627 (19) | |
C2 | 0.62433 (13) | 0.63055 (11) | 0.28462 (6) | 0.01510 (19) | |
C3 | 0.66147 (13) | 0.49037 (11) | 0.24972 (6) | 0.01555 (19) | |
H3A | 0.7032 | 0.4279 | 0.2812 | 0.019* | |
C4 | 0.62226 (13) | 0.46589 (11) | 0.15823 (6) | 0.01420 (18) | |
C5 | 0.63753 (13) | 0.33966 (11) | 0.08394 (6) | 0.01463 (18) | |
N3A | 0.80196 (12) | 0.03401 (11) | 0.55694 (6) | 0.01923 (18) | |
N4A | 0.90801 (14) | −0.15177 (12) | 0.60538 (7) | 0.0248 (2) | |
C6A | 0.89063 (14) | −0.00860 (13) | 0.62071 (7) | 0.0192 (2) | |
C7A | 0.96163 (15) | 0.10318 (14) | 0.70158 (7) | 0.0226 (2) | |
H7AA | 1.0235 | 0.0786 | 0.7475 | 0.027* | |
C8A | 0.93848 (15) | 0.24717 (14) | 0.71159 (8) | 0.0239 (2) | |
H8AA | 0.9838 | 0.3193 | 0.7653 | 0.029* | |
C9A | 0.84776 (15) | 0.29051 (13) | 0.64303 (8) | 0.0224 (2) | |
C10 | 0.78076 (15) | 0.17873 (13) | 0.56658 (7) | 0.0212 (2) | |
H10A | 0.7192 | 0.2017 | 0.5199 | 0.025* | |
C11A | 0.82578 (18) | 0.45015 (14) | 0.65337 (10) | 0.0324 (3) | |
H11A | 0.7779 | 0.4614 | 0.5969 | 0.049* | |
H11B | 0.9384 | 0.5245 | 0.6729 | 0.049* | |
H11C | 0.7470 | 0.4665 | 0.6969 | 0.049* | |
N3B | 0.26714 (12) | 0.00202 (10) | 0.01212 (6) | 0.01689 (17) | |
N4B | 0.37262 (14) | −0.08155 (12) | 0.13095 (7) | 0.02199 (19) | |
C6B | 0.30472 (14) | 0.02005 (12) | 0.10101 (7) | 0.01719 (19) | |
C7B | 0.26600 (15) | 0.14651 (13) | 0.15793 (7) | 0.0213 (2) | |
H7BA | 0.2909 | 0.1642 | 0.2197 | 0.026* | |
C8B | 0.19158 (15) | 0.24211 (12) | 0.12087 (8) | 0.0214 (2) | |
H8BA | 0.1650 | 0.3240 | 0.1585 | 0.026* | |
C9B | 0.15376 (14) | 0.22026 (12) | 0.02713 (8) | 0.0197 (2) | |
C10B | 0.19410 (14) | 0.09771 (12) | −0.02480 (7) | 0.0184 (2) | |
H10B | 0.1712 | 0.0791 | −0.0868 | 0.022* | |
C11B | 0.07429 (16) | 0.32759 (14) | −0.01255 (9) | 0.0264 (2) | |
H11D | 0.0564 | 0.2936 | −0.0766 | 0.040* | |
H11E | 0.1526 | 0.4299 | 0.0046 | 0.040* | |
H11F | −0.0369 | 0.3278 | 0.0090 | 0.040* | |
O3W | 0.52828 (12) | 1.04505 (10) | 0.31330 (5) | 0.02258 (17) | |
O2W | 0.54335 (13) | 0.32242 (10) | 0.43022 (6) | 0.02698 (19) | |
O1W | 0.84767 (12) | 0.15951 (12) | 0.25161 (6) | 0.0291 (2) | |
H1N2 | 0.523 (2) | 0.6047 (18) | 0.0897 (11) | 0.027 (4)* | |
H3NA | 0.968 (2) | −0.176 (2) | 0.6462 (12) | 0.040 (5)* | |
H1NB | 0.286 (2) | −0.080 (2) | −0.0250 (11) | 0.033 (4)* | |
H2NB | 0.393 (2) | −0.162 (2) | 0.0913 (12) | 0.039 (4)* | |
H3NB | 0.409 (2) | −0.063 (2) | 0.1891 (12) | 0.038 (4)* | |
H1NA | 0.749 (2) | −0.037 (2) | 0.5028 (12) | 0.040 (4)* | |
H2NA | 0.853 (2) | −0.220 (2) | 0.5538 (12) | 0.039 (4)* | |
H1W1 | 0.820 (2) | 0.200 (2) | 0.2082 (13) | 0.045 (5)* | |
H2W1 | 0.751 (3) | 0.123 (2) | 0.2703 (14) | 0.053 (6)* | |
H1W2 | 0.591 (2) | 0.414 (2) | 0.4263 (12) | 0.043 (5)* | |
H2W2 | 0.470 (2) | 0.330 (2) | 0.4684 (13) | 0.044 (5)* | |
H1W3 | 0.558 (2) | 0.9771 (19) | 0.3403 (11) | 0.034 (4)* | |
H2W3 | 0.529 (2) | 1.128 (2) | 0.3540 (12) | 0.043 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0295 (4) | 0.0177 (4) | 0.0135 (3) | 0.0084 (3) | 0.0007 (3) | 0.0032 (3) |
O2 | 0.0349 (4) | 0.0168 (4) | 0.0150 (3) | 0.0118 (3) | −0.0016 (3) | 0.0001 (3) |
O3 | 0.0337 (4) | 0.0199 (4) | 0.0145 (3) | 0.0152 (3) | 0.0010 (3) | 0.0026 (3) |
O4 | 0.0249 (4) | 0.0174 (4) | 0.0129 (3) | 0.0083 (3) | −0.0006 (3) | 0.0022 (3) |
N1 | 0.0240 (4) | 0.0158 (4) | 0.0130 (4) | 0.0078 (3) | 0.0007 (3) | 0.0013 (3) |
N2 | 0.0224 (4) | 0.0151 (4) | 0.0120 (4) | 0.0080 (3) | 0.0004 (3) | 0.0014 (3) |
C1 | 0.0186 (5) | 0.0164 (4) | 0.0130 (4) | 0.0051 (4) | 0.0010 (3) | 0.0015 (3) |
C2 | 0.0181 (4) | 0.0143 (4) | 0.0124 (4) | 0.0047 (4) | 0.0010 (3) | 0.0020 (3) |
C3 | 0.0188 (5) | 0.0148 (4) | 0.0135 (4) | 0.0055 (4) | 0.0011 (3) | 0.0034 (3) |
C4 | 0.0157 (4) | 0.0129 (4) | 0.0138 (4) | 0.0046 (3) | 0.0010 (3) | 0.0022 (3) |
C5 | 0.0167 (4) | 0.0140 (4) | 0.0128 (4) | 0.0039 (3) | 0.0020 (3) | 0.0027 (3) |
N3A | 0.0224 (4) | 0.0195 (4) | 0.0143 (4) | 0.0057 (3) | −0.0004 (3) | 0.0016 (3) |
N4A | 0.0293 (5) | 0.0217 (5) | 0.0213 (5) | 0.0068 (4) | −0.0069 (4) | 0.0037 (4) |
C6A | 0.0182 (5) | 0.0214 (5) | 0.0164 (5) | 0.0025 (4) | 0.0006 (4) | 0.0047 (4) |
C7A | 0.0210 (5) | 0.0264 (5) | 0.0158 (5) | 0.0009 (4) | −0.0030 (4) | 0.0037 (4) |
C8A | 0.0203 (5) | 0.0256 (6) | 0.0189 (5) | −0.0002 (4) | −0.0002 (4) | −0.0015 (4) |
C9A | 0.0206 (5) | 0.0207 (5) | 0.0228 (5) | 0.0042 (4) | 0.0021 (4) | 0.0002 (4) |
C10 | 0.0223 (5) | 0.0212 (5) | 0.0199 (5) | 0.0074 (4) | 0.0008 (4) | 0.0033 (4) |
C11A | 0.0317 (6) | 0.0207 (6) | 0.0391 (7) | 0.0074 (5) | −0.0022 (5) | −0.0039 (5) |
N3B | 0.0194 (4) | 0.0146 (4) | 0.0160 (4) | 0.0062 (3) | 0.0015 (3) | 0.0005 (3) |
N4B | 0.0294 (5) | 0.0216 (5) | 0.0152 (4) | 0.0108 (4) | −0.0015 (4) | 0.0013 (3) |
C6B | 0.0168 (4) | 0.0158 (5) | 0.0168 (5) | 0.0028 (4) | 0.0016 (3) | 0.0012 (4) |
C7B | 0.0238 (5) | 0.0187 (5) | 0.0184 (5) | 0.0050 (4) | 0.0034 (4) | −0.0009 (4) |
C8B | 0.0209 (5) | 0.0152 (5) | 0.0260 (5) | 0.0047 (4) | 0.0065 (4) | −0.0009 (4) |
C9B | 0.0168 (5) | 0.0154 (5) | 0.0272 (5) | 0.0046 (4) | 0.0049 (4) | 0.0049 (4) |
C10B | 0.0184 (5) | 0.0174 (5) | 0.0194 (5) | 0.0048 (4) | 0.0021 (4) | 0.0048 (4) |
C11B | 0.0260 (6) | 0.0207 (5) | 0.0370 (6) | 0.0100 (4) | 0.0063 (5) | 0.0112 (5) |
O3W | 0.0336 (5) | 0.0189 (4) | 0.0159 (4) | 0.0100 (3) | −0.0003 (3) | 0.0032 (3) |
O2W | 0.0402 (5) | 0.0185 (4) | 0.0252 (4) | 0.0108 (4) | 0.0132 (4) | 0.0052 (3) |
O1W | 0.0251 (4) | 0.0407 (5) | 0.0259 (4) | 0.0095 (4) | −0.0003 (3) | 0.0182 (4) |
O1—C1 | 1.2637 (12) | C11A—H11A | 0.9600 |
O2—C1 | 1.2640 (13) | C11A—H11B | 0.9600 |
O3—C5 | 1.2637 (12) | C11A—H11C | 0.9600 |
O4—C5 | 1.2511 (12) | N3B—C6B | 1.3468 (13) |
N1—N2 | 1.3467 (12) | N3B—C10B | 1.3618 (13) |
N1—C2 | 1.3483 (13) | N3B—H1NB | 0.897 (17) |
N2—C4 | 1.3572 (12) | N4B—C6B | 1.3329 (14) |
N2—H1N2 | 0.929 (16) | N4B—H2NB | 0.910 (18) |
C1—C2 | 1.4907 (14) | N4B—H3NB | 0.890 (18) |
C2—C3 | 1.4038 (14) | C6B—C7B | 1.4193 (14) |
C3—C4 | 1.3798 (13) | C7B—C8B | 1.3683 (16) |
C3—H3A | 0.9300 | C7B—H7BA | 0.9300 |
C4—C5 | 1.4884 (13) | C8B—C9B | 1.4153 (16) |
N3A—C6A | 1.3468 (14) | C8B—H8BA | 0.9300 |
N3A—C10 | 1.3656 (14) | C9B—C10B | 1.3638 (15) |
N3A—H1NA | 0.943 (18) | C9B—C11B | 1.5027 (15) |
N4A—C6A | 1.3356 (15) | C10B—H10B | 0.9300 |
N4A—H3NA | 0.863 (18) | C11B—H11D | 0.9600 |
N4A—H2NA | 0.909 (18) | C11B—H11E | 0.9600 |
C6A—C7A | 1.4171 (15) | C11B—H11F | 0.9600 |
C7A—C8A | 1.3643 (17) | O3W—H1W3 | 0.889 (18) |
C7A—H7AA | 0.9300 | O3W—H2W3 | 0.879 (19) |
C8A—C9A | 1.4155 (17) | O2W—H1W2 | 0.85 (2) |
C8A—H8AA | 0.9300 | O2W—H2W2 | 0.86 (2) |
C9A—C10 | 1.3656 (15) | O1W—H1W1 | 0.87 (2) |
C9A—C11A | 1.5026 (17) | O1W—H2W1 | 0.85 (2) |
C10—H10A | 0.9300 | ||
N2—N1—C2 | 104.08 (8) | N3A—C10—H10A | 119.2 |
N1—N2—C4 | 112.83 (8) | C9A—C10—H10A | 119.2 |
N1—N2—H1N2 | 117.6 (9) | C9A—C11A—H11A | 109.5 |
C4—N2—H1N2 | 129.5 (9) | C9A—C11A—H11B | 109.5 |
O1—C1—O2 | 123.84 (9) | H11A—C11A—H11B | 109.5 |
O1—C1—C2 | 117.16 (9) | C9A—C11A—H11C | 109.5 |
O2—C1—C2 | 119.00 (9) | H11A—C11A—H11C | 109.5 |
N1—C2—C3 | 111.76 (9) | H11B—C11A—H11C | 109.5 |
N1—C2—C1 | 121.73 (9) | C6B—N3B—C10B | 123.39 (9) |
C3—C2—C1 | 126.47 (9) | C6B—N3B—H1NB | 118.8 (11) |
C4—C3—C2 | 104.59 (9) | C10B—N3B—H1NB | 117.7 (11) |
C4—C3—H3A | 127.7 | C6B—N4B—H2NB | 119.7 (11) |
C2—C3—H3A | 127.7 | C6B—N4B—H3NB | 118.8 (11) |
N2—C4—C3 | 106.73 (9) | H2NB—N4B—H3NB | 121.1 (16) |
N2—C4—C5 | 122.30 (9) | N4B—C6B—N3B | 119.07 (10) |
C3—C4—C5 | 130.96 (9) | N4B—C6B—C7B | 123.59 (10) |
O4—C5—O3 | 125.34 (9) | N3B—C6B—C7B | 117.33 (10) |
O4—C5—C4 | 118.90 (9) | C8B—C7B—C6B | 119.29 (10) |
O3—C5—C4 | 115.76 (9) | C8B—C7B—H7BA | 120.4 |
C6A—N3A—C10 | 123.07 (10) | C6B—C7B—H7BA | 120.4 |
C6A—N3A—H1NA | 120.5 (11) | C7B—C8B—C9B | 122.07 (10) |
C10—N3A—H1NA | 116.5 (11) | C7B—C8B—H8BA | 119.0 |
C6A—N4A—H3NA | 118.1 (12) | C9B—C8B—H8BA | 119.0 |
C6A—N4A—H2NA | 119.0 (11) | C10B—C9B—C8B | 116.49 (10) |
H3NA—N4A—H2NA | 122.8 (16) | C10B—C9B—C11B | 122.09 (10) |
N4A—C6A—N3A | 119.34 (10) | C8B—C9B—C11B | 121.41 (10) |
N4A—C6A—C7A | 123.26 (10) | N3B—C10B—C9B | 121.42 (10) |
N3A—C6A—C7A | 117.41 (10) | N3B—C10B—H10B | 119.3 |
C8A—C7A—C6A | 119.48 (10) | C9B—C10B—H10B | 119.3 |
C8A—C7A—H7AA | 120.3 | C9B—C11B—H11D | 109.5 |
C6A—C7A—H7AA | 120.3 | C9B—C11B—H11E | 109.5 |
C7A—C8A—C9A | 122.21 (10) | H11D—C11B—H11E | 109.5 |
C7A—C8A—H8AA | 118.9 | C9B—C11B—H11F | 109.5 |
C9A—C8A—H8AA | 118.9 | H11D—C11B—H11F | 109.5 |
C10—C9A—C8A | 116.20 (10) | H11E—C11B—H11F | 109.5 |
C10—C9A—C11A | 121.63 (11) | H1W3—O3W—H2W3 | 109.1 (15) |
C8A—C9A—C11A | 122.17 (11) | H1W2—O2W—H2W2 | 105.7 (17) |
N3A—C10—C9A | 121.62 (10) | H1W1—O1W—H2W1 | 105.7 (18) |
C2—N1—N2—C4 | −0.55 (11) | N4A—C6A—C7A—C8A | 179.69 (11) |
N2—N1—C2—C3 | 0.16 (11) | N3A—C6A—C7A—C8A | −0.19 (16) |
N2—N1—C2—C1 | 177.98 (9) | C6A—C7A—C8A—C9A | −1.06 (17) |
O1—C1—C2—N1 | 172.05 (10) | C7A—C8A—C9A—C10 | 1.43 (17) |
O2—C1—C2—N1 | −8.81 (15) | C7A—C8A—C9A—C11A | −178.63 (11) |
O1—C1—C2—C3 | −10.46 (16) | C6A—N3A—C10—C9A | −0.66 (17) |
O2—C1—C2—C3 | 168.68 (10) | C8A—C9A—C10—N3A | −0.58 (16) |
N1—C2—C3—C4 | 0.25 (12) | C11A—C9A—C10—N3A | 179.48 (11) |
C1—C2—C3—C4 | −177.44 (10) | C10B—N3B—C6B—N4B | 178.55 (10) |
N1—N2—C4—C3 | 0.72 (12) | C10B—N3B—C6B—C7B | −0.34 (15) |
N1—N2—C4—C5 | −178.32 (9) | N4B—C6B—C7B—C8B | −178.10 (11) |
C2—C3—C4—N2 | −0.56 (11) | N3B—C6B—C7B—C8B | 0.74 (15) |
C2—C3—C4—C5 | 178.37 (10) | C6B—C7B—C8B—C9B | −0.84 (17) |
N2—C4—C5—O4 | −4.89 (15) | C7B—C8B—C9B—C10B | 0.50 (16) |
C3—C4—C5—O4 | 176.33 (10) | C7B—C8B—C9B—C11B | −179.15 (10) |
N2—C4—C5—O3 | 174.18 (9) | C6B—N3B—C10B—C9B | 0.02 (16) |
C3—C4—C5—O3 | −4.60 (16) | C8B—C9B—C10B—N3B | −0.08 (15) |
C10—N3A—C6A—N4A | −178.84 (10) | C11B—C9B—C10B—N3B | 179.57 (10) |
C10—N3A—C6A—C7A | 1.05 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···O4i | 0.931 (16) | 1.871 (16) | 2.7912 (12) | 169.7 (15) |
N4A—H3NA···O1Wii | 0.861 (18) | 2.024 (17) | 2.8520 (14) | 161.2 (17) |
N3B—H1NB···O3iii | 0.900 (17) | 1.755 (17) | 2.6483 (12) | 171.4 (16) |
N4B—H2NB···O4iii | 0.914 (18) | 2.022 (18) | 2.9323 (13) | 173.8 (16) |
N4B—H3NB···O3Wiv | 0.889 (18) | 2.007 (18) | 2.8641 (13) | 161.6 (17) |
N3A—H1NA···O2iv | 0.942 (18) | 1.732 (18) | 2.6686 (12) | 172.8 (17) |
N4A—H2NA···O1iv | 0.907 (18) | 2.106 (18) | 3.0021 (13) | 169.4 (15) |
O1W—H1W1···O3 | 0.871 (19) | 1.902 (19) | 2.7517 (12) | 164.8 (17) |
O1W—H2W1···O3Wiv | 0.85 (2) | 1.94 (2) | 2.7878 (14) | 178 (2) |
O2W—H1W2···O1 | 0.850 (18) | 2.003 (18) | 2.8427 (12) | 169.8 (17) |
O2W—H2W2···O1v | 0.858 (18) | 1.987 (18) | 2.8434 (13) | 176.1 (15) |
O3W—H1W3···O2 | 0.888 (17) | 1.844 (17) | 2.7299 (12) | 174.8 (15) |
O3W—H2W3···O2Wvi | 0.881 (18) | 1.900 (18) | 2.7758 (13) | 172.1 (17) |
C10—H10A···O2W | 0.93 | 2.50 | 3.3986 (15) | 164 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+2, −y, −z+1; (iii) −x+1, −y, −z; (iv) x, y−1, z; (v) −x+1, −y+1, −z+1; (vi) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | 2C6H9N2+·C5H2N2O42−·3H2O |
Mr | 426.44 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 7.8985 (1), 9.2195 (1), 15.3922 (2) |
α, β, γ (°) | 101.942 (1), 93.883 (1), 104.648 (1) |
V (Å3) | 1052.40 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.47 × 0.24 × 0.21 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.952, 0.978 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26056, 6103, 5085 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.113, 1.07 |
No. of reflections | 6103 |
No. of parameters | 325 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.44, −0.24 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···O4i | 0.931 (16) | 1.871 (16) | 2.7912 (12) | 169.7 (15) |
N4A—H3NA···O1Wii | 0.861 (18) | 2.024 (17) | 2.8520 (14) | 161.2 (17) |
N3B—H1NB···O3iii | 0.900 (17) | 1.755 (17) | 2.6483 (12) | 171.4 (16) |
N4B—H2NB···O4iii | 0.914 (18) | 2.022 (18) | 2.9323 (13) | 173.8 (16) |
N4B—H3NB···O3Wiv | 0.889 (18) | 2.007 (18) | 2.8641 (13) | 161.6 (17) |
N3A—H1NA···O2iv | 0.942 (18) | 1.732 (18) | 2.6686 (12) | 172.8 (17) |
N4A—H2NA···O1iv | 0.907 (18) | 2.106 (18) | 3.0021 (13) | 169.4 (15) |
O1W—H1W1···O3 | 0.871 (19) | 1.902 (19) | 2.7517 (12) | 164.8 (17) |
O1W—H2W1···O3Wiv | 0.85 (2) | 1.94 (2) | 2.7878 (14) | 178 (2) |
O2W—H1W2···O1 | 0.850 (18) | 2.003 (18) | 2.8427 (12) | 169.8 (17) |
O2W—H2W2···O1v | 0.858 (18) | 1.987 (18) | 2.8434 (13) | 176.1 (15) |
O3W—H1W3···O2 | 0.888 (17) | 1.844 (17) | 2.7299 (12) | 174.8 (15) |
O3W—H2W3···O2Wvi | 0.881 (18) | 1.900 (18) | 2.7758 (13) | 172.1 (17) |
C10—H10A···O2W | 0.93 | 2.50 | 3.3986 (15) | 164 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+2, −y, −z+1; (iii) −x+1, −y, −z; (iv) x, y−1, z; (v) −x+1, −y+1, −z+1; (vi) x, y+1, z. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
HKF and TSH thank Universiti Sains Malaysia (USM) for the Research University Grant (1001/PFIZIK/811160). TSH also thanks USM for the award of a research fellowship and MH thanks USM for a post-doctoral research fellowship.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pyridine and its derivatives play an important role in heterocyclic chemistry (Pozharski et al., 1997; Katritzky et al., 1996). They are often involved in hydrogen-bond interactions (Jeffrey & Saenger, 1991; Jeffrey, 1997; Scheiner, 1997). Pyrazole-related molecules have attracted considerable attention due to their biological activities (Lee et al., 1989; Chambers et al., 1985). 3,5-Pyrazole dicarboxylic acid (H2PzDCA) is a multifunctional ligand; it has multiple coordination sites that allow structures of higher dimensions and it also has abstractable protons that allow various acidity-dependent coordination modes (Pan et al., 2000). A variety of H2PzDCA coordination compounds have been synthesized and reported in the literature (Pan, Ching et al., 2001; Pan, Frydel et al., 2001). Since our aim is to study some interesting hydrogen-bonding interactions, the crystal structure of the title compound is presented here.
The asymmetric unit of the title compound, (Fig. 1), consists of two 2-amino-5-methylpyridinium cations, a 1H-pyrazole-3-5-dicarboxylate anion and three water molecules. The 1H-pyrazole-3,5-dicarboxylate anion and 2-amino-5-methylpyridinium cations are approximately planar with a maximum deviations of 0.208 (1) Å at atom O2 and 0.018 (2) Å at atoms N4A, C11A and 0.014 (2) Å at atom N4B. The torsion angles (O2/C2/C1/N1), (C1–C3/O1), (C3–C5/O3) and (N2/C4/C5/04) are 8.81 (15), 10.46 (16), 4.89 (15) and 4.60 (16)°, respectively. Bond lengths (Allen et al., 1987) and angles are normal and comparable to those related structures (Xia et al., 2007; King et al., 2004).
In the crystal packing (Fig. 2), intermolecular N2—H1N2···O4, N4A—H3NA···O1W, N3B—H1NB···O3, N4B—H2NB···O4, N4B—H3NB···O3W, N3A—H1NA···O2, N4A—H2NA···O1, O1W—H1W1···O3, O1W—H2W1···O3W, O2W—H1W2···O1, O2W—H2W2···O1, O3W—H1W3···O2, O3W—H2W3···O2W and C10—H10A···O2W hydrogen bonds (Table 1) link the molecules into three-dimensional network. Within this network, pairs of intermolecular N3B—H1NB···O3, N4A—H2NA···O1 and O1—H1W2···O2W, O2W—H1W2···O1 hydrogen bonds connect neighbouring molecules to form dimers, generating R22(8) and R24(8) (Bernstein et al., 1995) ring motifs, respectively.