organic compounds
2-(2-Oxothiolan-3-yl)isoindoline-1,3-dione
aDepartment of Chemistry, University of Sargodha, Sargodha, Pakistan, and bDepartment of Physics, University of Sargodha, Sargodha, Pakistan
*Correspondence e-mail: dmntahir_uos@yahoo.com
In the title compound, C12H9NO3S, the isoindoline-1,3-dione group is almost planar, with an r.m.s. deviation of 0.020 Å, whereas the heterocyclic ring approximates to an envelope with the methylene group not adjacent to the S atom in the flap position. A short intramolecular C—H⋯O contact generates an S(6) ring motif. In the weak aromatic π–π stacking interactions occur between the centroids of the benzene rings at a distance of 3.558 (2) Å.
Related literature
For background to et al. (2001); Lee et al. (2001); Nozawa et al. (1981). For related crystal structures, see: Beck et al. (2007); Freer & Kraut (1965). For graph-set notation, see: Bernstein et al. (1995).
see: HussainExperimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON.
Supporting information
https://doi.org/10.1107/S1600536810043400/hb5705sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810043400/hb5705Isup2.hkl
Homophthallic acid (1.0 g, 5.5 mmol, 1 eq) was added to 4-(methylthio)-2-(1,3-dioxoisoindolin-2-yl)butanoyl chloride (6.5 g, 0.022 mol, 4 eq) and the mixture was heated at 473 K with continuous stirring for 6 h. The crude product was added to chilled water (20 ml), partitioned with EtOAc (3 × 25 ml), organic layer was dried over anhydrous Na2SO4, filtered and concentrated under reduced pressure. The column chromatographic separation using EtOAc and n-hexane (3:7) as mobile phase afforded the title compound (I) as colourless needles.
The H atoms were positioned geometrically with C—H = 0.93–0.97 Å and were included in the
in the riding model approximation, with Uiso(H) = xUeq(C), where x = 1.2 for all H atoms.Isocoumarins are important class of naturally occurring compounds. Their structure is similar to coumarin but with inverted lactone ring. They exhibit a wide range of biological activities such as antimicrobial (Hussain et al., 2001), anti-fungal (Nozawa et al., 1981), anti-angiogenic (Lee et al., 2001). The title compound (I, Fig. 1) was obtained as an interesting side-product during the synthesis of isocoumarin.
The
of D,L-homocysteine thiolactone hydrochloride (Freer & Kraut, 1965) and (R*)-2-(4-Chlorophenyl)-N-(hept-4-yl)-2-((S*)-2- oxotetrahydrothiophen-3-ylamino)acetamide (Beck et al., 2007) have been reported which contain the heterocyclic ring.The title compound essentially consists of monomers. In (I), the 2-benzoazole-1,3-dione group (C1–C8/N1/O1/O2) is planar with r.m.s. deviation of 0.0196 Å. The heterocyclic ring (C9/C10/C11/S1/C12) is not planar as the r.m.s. deviation of the plane is 0.1511 Å. The dihedral angle between these two groups is 88.05 (10)°. There exist weak intramolecular H-bondings of C—H···O type (Table 1, Fig. 1) completing S(5) and S(6) ring motifs (Bernstein et al., 1995). There exist π–π interaction between the centroids of benzene rings at a distance of 3.558 (2) Å [symmetry: 1 - x, - y, - z].
For background to
see: Hussain et al. (2001); Lee et al. (2001); Nozawa et al. (1981). For related crystal structures, see: Beck et al. (2007); Freer & Kraut (1965). For graph-set notation, see: Bernstein et al. (1995).Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).C12H9NO3S | F(000) = 512 |
Mr = 247.26 | Dx = 1.500 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1105 reflections |
a = 8.0601 (13) Å | θ = 2.1–25.0° |
b = 6.9860 (11) Å | µ = 0.29 mm−1 |
c = 19.709 (3) Å | T = 296 K |
β = 99.296 (9)° | Needle, colourless |
V = 1095.2 (3) Å3 | 0.24 × 0.10 × 0.08 mm |
Z = 4 |
Bruker Kappa APEXII CCD diffractometer | 1934 independent reflections |
Radiation source: fine-focus sealed tube | 1105 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.093 |
Detector resolution: 8.2 pixels mm-1 | θmax = 25.0°, θmin = 2.1° |
ω scans | h = −9→9 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −8→8 |
Tmin = 0.968, Tmax = 0.978 | l = −23→23 |
14781 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.055 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.151 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0651P)2 + 0.3208P] where P = (Fo2 + 2Fc2)/3 |
1934 reflections | (Δ/σ)max < 0.001 |
154 parameters | Δρmax = 0.40 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
C12H9NO3S | V = 1095.2 (3) Å3 |
Mr = 247.26 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.0601 (13) Å | µ = 0.29 mm−1 |
b = 6.9860 (11) Å | T = 296 K |
c = 19.709 (3) Å | 0.24 × 0.10 × 0.08 mm |
β = 99.296 (9)° |
Bruker Kappa APEXII CCD diffractometer | 1934 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 1105 reflections with I > 2σ(I) |
Tmin = 0.968, Tmax = 0.978 | Rint = 0.093 |
14781 measured reflections |
R[F2 > 2σ(F2)] = 0.055 | 0 restraints |
wR(F2) = 0.151 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.40 e Å−3 |
1934 reflections | Δρmin = −0.31 e Å−3 |
154 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 1.27260 (14) | 0.17317 (15) | 0.21281 (6) | 0.0666 (4) | |
O1 | 1.0043 (4) | 0.2417 (4) | 0.01824 (15) | 0.0690 (11) | |
O2 | 0.6135 (4) | 0.3134 (4) | 0.15927 (16) | 0.0694 (11) | |
O3 | 1.0050 (3) | −0.0304 (4) | 0.16664 (14) | 0.0619 (11) | |
N1 | 0.8391 (4) | 0.2932 (4) | 0.10189 (16) | 0.0463 (11) | |
C1 | 0.8677 (5) | 0.2558 (5) | 0.0348 (2) | 0.0496 (14) | |
C2 | 0.6994 (5) | 0.2417 (5) | −0.0077 (2) | 0.0445 (14) | |
C3 | 0.6538 (6) | 0.2073 (5) | −0.0763 (2) | 0.0600 (16) | |
C4 | 0.4821 (7) | 0.1996 (6) | −0.1015 (2) | 0.0724 (19) | |
C5 | 0.3638 (6) | 0.2223 (6) | −0.0585 (3) | 0.073 (2) | |
C6 | 0.4108 (5) | 0.2546 (5) | 0.0105 (3) | 0.0580 (16) | |
C7 | 0.5801 (4) | 0.2646 (5) | 0.0350 (2) | 0.0469 (14) | |
C8 | 0.6676 (5) | 0.2926 (5) | 0.1061 (2) | 0.0486 (14) | |
C9 | 0.9686 (4) | 0.3132 (5) | 0.1613 (2) | 0.0492 (12) | |
C10 | 1.0927 (5) | 0.4715 (5) | 0.1568 (2) | 0.0537 (16) | |
C11 | 1.2487 (5) | 0.4309 (5) | 0.2093 (2) | 0.0553 (16) | |
C12 | 1.0662 (5) | 0.1259 (5) | 0.17663 (18) | 0.0444 (12) | |
H3 | 0.73362 | 0.18977 | −0.10491 | 0.0718* | |
H4 | 0.44640 | 0.17879 | −0.14821 | 0.0870* | |
H5 | 0.25006 | 0.21559 | −0.07677 | 0.0880* | |
H6 | 0.33150 | 0.26915 | 0.03956 | 0.0696* | |
H9 | 0.91266 | 0.34070 | 0.20085 | 0.0591* | |
H10A | 1.04437 | 0.59374 | 0.16649 | 0.0646* | |
H10B | 1.12157 | 0.47652 | 0.11092 | 0.0646* | |
H11A | 1.23521 | 0.48081 | 0.25402 | 0.0667* | |
H11B | 1.34670 | 0.49028 | 0.19538 | 0.0667* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0529 (7) | 0.0572 (7) | 0.0828 (9) | 0.0032 (5) | −0.0094 (6) | 0.0022 (6) |
O1 | 0.0456 (18) | 0.086 (2) | 0.078 (2) | −0.0061 (15) | 0.0178 (16) | −0.0142 (16) |
O2 | 0.0619 (19) | 0.075 (2) | 0.076 (2) | −0.0060 (16) | 0.0255 (17) | −0.0102 (16) |
O3 | 0.0674 (19) | 0.0400 (16) | 0.078 (2) | −0.0076 (14) | 0.0106 (16) | −0.0004 (14) |
N1 | 0.0420 (19) | 0.0466 (18) | 0.049 (2) | 0.0011 (14) | 0.0038 (16) | 0.0021 (15) |
C1 | 0.040 (2) | 0.042 (2) | 0.067 (3) | −0.0027 (18) | 0.009 (2) | 0.0031 (18) |
C2 | 0.043 (2) | 0.037 (2) | 0.052 (3) | −0.0082 (16) | 0.003 (2) | 0.0049 (17) |
C3 | 0.069 (3) | 0.051 (2) | 0.058 (3) | −0.013 (2) | 0.004 (2) | 0.009 (2) |
C4 | 0.091 (4) | 0.056 (3) | 0.059 (3) | −0.017 (3) | −0.022 (3) | 0.010 (2) |
C5 | 0.054 (3) | 0.044 (3) | 0.111 (5) | −0.006 (2) | −0.019 (3) | 0.018 (3) |
C6 | 0.041 (2) | 0.037 (2) | 0.092 (4) | −0.0023 (18) | −0.001 (2) | 0.004 (2) |
C7 | 0.039 (2) | 0.029 (2) | 0.069 (3) | −0.0025 (16) | −0.002 (2) | 0.0051 (17) |
C8 | 0.042 (2) | 0.038 (2) | 0.068 (3) | −0.0018 (17) | 0.016 (2) | 0.0010 (19) |
C9 | 0.046 (2) | 0.048 (2) | 0.053 (2) | −0.0043 (18) | 0.006 (2) | −0.0034 (19) |
C10 | 0.061 (3) | 0.041 (2) | 0.058 (3) | −0.005 (2) | 0.006 (2) | −0.0018 (18) |
C11 | 0.056 (3) | 0.053 (2) | 0.056 (3) | −0.007 (2) | 0.006 (2) | −0.009 (2) |
C12 | 0.048 (2) | 0.042 (2) | 0.044 (2) | −0.0006 (18) | 0.0098 (19) | 0.0016 (17) |
S1—C11 | 1.811 (4) | C6—C7 | 1.374 (6) |
S1—C12 | 1.733 (4) | C7—C8 | 1.477 (5) |
O1—C1 | 1.202 (5) | C9—C10 | 1.503 (5) |
O2—C8 | 1.207 (5) | C9—C12 | 1.532 (5) |
O3—C12 | 1.201 (5) | C10—C11 | 1.521 (6) |
N1—C1 | 1.403 (5) | C3—H3 | 0.9300 |
N1—C8 | 1.398 (5) | C4—H4 | 0.9300 |
N1—C9 | 1.444 (5) | C5—H5 | 0.9300 |
C1—C2 | 1.478 (6) | C6—H6 | 0.9300 |
C2—C3 | 1.364 (5) | C9—H9 | 0.9800 |
C2—C7 | 1.386 (5) | C10—H10A | 0.9700 |
C3—C4 | 1.394 (7) | C10—H10B | 0.9700 |
C4—C5 | 1.383 (7) | C11—H11A | 0.9700 |
C5—C6 | 1.370 (8) | C11—H11B | 0.9700 |
C11—S1—C12 | 94.86 (18) | S1—C12—O3 | 125.6 (3) |
C1—N1—C8 | 111.7 (3) | S1—C12—C9 | 110.3 (2) |
C1—N1—C9 | 125.1 (3) | O3—C12—C9 | 124.1 (3) |
C8—N1—C9 | 123.0 (3) | C2—C3—H3 | 121.00 |
O1—C1—N1 | 124.6 (4) | C4—C3—H3 | 122.00 |
O1—C1—C2 | 129.6 (4) | C3—C4—H4 | 119.00 |
N1—C1—C2 | 105.7 (3) | C5—C4—H4 | 119.00 |
C1—C2—C3 | 130.5 (4) | C4—C5—H5 | 119.00 |
C1—C2—C7 | 108.2 (3) | C6—C5—H5 | 119.00 |
C3—C2—C7 | 121.3 (4) | C5—C6—H6 | 121.00 |
C2—C3—C4 | 116.9 (4) | C7—C6—H6 | 121.00 |
C3—C4—C5 | 121.4 (4) | N1—C9—H9 | 107.00 |
C4—C5—C6 | 121.3 (5) | C10—C9—H9 | 107.00 |
C5—C6—C7 | 117.2 (4) | C12—C9—H9 | 107.00 |
C2—C7—C6 | 121.9 (4) | C9—C10—H10A | 110.00 |
C2—C7—C8 | 108.7 (3) | C9—C10—H10B | 110.00 |
C6—C7—C8 | 129.5 (4) | C11—C10—H10A | 110.00 |
O2—C8—N1 | 123.4 (4) | C11—C10—H10B | 110.00 |
O2—C8—C7 | 131.0 (4) | H10A—C10—H10B | 108.00 |
N1—C8—C7 | 105.6 (3) | S1—C11—H11A | 110.00 |
N1—C9—C10 | 115.1 (3) | S1—C11—H11B | 110.00 |
N1—C9—C12 | 111.0 (3) | C10—C11—H11A | 110.00 |
C10—C9—C12 | 108.3 (3) | C10—C11—H11B | 110.00 |
C9—C10—C11 | 107.9 (3) | H11A—C11—H11B | 109.00 |
S1—C11—C10 | 106.4 (2) | ||
C12—S1—C11—C10 | −19.3 (3) | C1—C2—C7—C6 | −178.6 (3) |
C11—S1—C12—O3 | −178.8 (4) | C1—C2—C7—C8 | −0.4 (4) |
C11—S1—C12—C9 | −0.9 (3) | C3—C2—C7—C6 | −0.3 (6) |
C8—N1—C1—O1 | −177.2 (3) | C3—C2—C7—C8 | 178.0 (3) |
C8—N1—C1—C2 | 3.5 (4) | C2—C3—C4—C5 | −1.2 (6) |
C9—N1—C1—O1 | −2.4 (6) | C3—C4—C5—C6 | 0.5 (6) |
C9—N1—C1—C2 | 178.3 (3) | C4—C5—C6—C7 | 0.4 (6) |
C1—N1—C8—O2 | 176.8 (3) | C5—C6—C7—C2 | −0.5 (5) |
C1—N1—C8—C7 | −3.8 (4) | C5—C6—C7—C8 | −178.3 (4) |
C9—N1—C8—O2 | 1.9 (5) | C2—C7—C8—O2 | −178.1 (4) |
C9—N1—C8—C7 | −178.7 (3) | C2—C7—C8—N1 | 2.5 (4) |
C1—N1—C9—C10 | 59.6 (4) | C6—C7—C8—O2 | −0.1 (7) |
C1—N1—C9—C12 | −63.9 (4) | C6—C7—C8—N1 | −179.5 (4) |
C8—N1—C9—C10 | −126.2 (3) | N1—C9—C10—C11 | −160.7 (3) |
C8—N1—C9—C12 | 110.3 (4) | C12—C9—C10—C11 | −35.8 (4) |
O1—C1—C2—C3 | 0.8 (7) | N1—C9—C12—S1 | 148.7 (2) |
O1—C1—C2—C7 | 178.9 (4) | N1—C9—C12—O3 | −33.4 (5) |
N1—C1—C2—C3 | −180.0 (4) | C10—C9—C12—S1 | 21.4 (4) |
N1—C1—C2—C7 | −1.8 (4) | C10—C9—C12—O3 | −160.7 (4) |
C1—C2—C3—C4 | 179.0 (4) | C9—C10—C11—S1 | 34.4 (4) |
C7—C2—C3—C4 | 1.1 (5) |
Experimental details
Crystal data | |
Chemical formula | C12H9NO3S |
Mr | 247.26 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 8.0601 (13), 6.9860 (11), 19.709 (3) |
β (°) | 99.296 (9) |
V (Å3) | 1095.2 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.29 |
Crystal size (mm) | 0.24 × 0.10 × 0.08 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.968, 0.978 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14781, 1934, 1105 |
Rint | 0.093 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.055, 0.151, 1.02 |
No. of reflections | 1934 |
No. of parameters | 154 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.40, −0.31 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009), WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
Acknowledgements
The authors acknowledge the provision of funds for the purchase of the diffractometer and encouragement by Dr Muhammad Akram Chaudhary, Vice Chancellor, University of Sargodha, Pakistan.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Isocoumarins are important class of naturally occurring compounds. Their structure is similar to coumarin but with inverted lactone ring. They exhibit a wide range of biological activities such as antimicrobial (Hussain et al., 2001), anti-fungal (Nozawa et al., 1981), anti-angiogenic (Lee et al., 2001). The title compound (I, Fig. 1) was obtained as an interesting side-product during the synthesis of isocoumarin.
The crystal structure of D,L-homocysteine thiolactone hydrochloride (Freer & Kraut, 1965) and (R*)-2-(4-Chlorophenyl)-N-(hept-4-yl)-2-((S*)-2- oxotetrahydrothiophen-3-ylamino)acetamide (Beck et al., 2007) have been reported which contain the heterocyclic ring.
The title compound essentially consists of monomers. In (I), the 2-benzoazole-1,3-dione group (C1–C8/N1/O1/O2) is planar with r.m.s. deviation of 0.0196 Å. The heterocyclic ring (C9/C10/C11/S1/C12) is not planar as the r.m.s. deviation of the plane is 0.1511 Å. The dihedral angle between these two groups is 88.05 (10)°. There exist weak intramolecular H-bondings of C—H···O type (Table 1, Fig. 1) completing S(5) and S(6) ring motifs (Bernstein et al., 1995). There exist π–π interaction between the centroids of benzene rings at a distance of 3.558 (2) Å [symmetry: 1 - x, - y, - z].