organic compounds
12β,14-Dihydroxy-3-oxo-5β,20(22)-cardenolide monohydrate
aCollege of Biotechnology, Tianjin University of Science and Technology, Tianjin 300457, People's Republic of China
*Correspondence e-mail: minw@tust.edu.cn
The title compound, digoxigenone, C23H30O5·H2O, was biotransformed from digoxigenin. In the crystal, intermolecular O—H⋯O hydrogen bonds contribute to the formation of a three-dimensional supramolecular structure. The title compound has three fused six-membered rings (A,B,C) and two non-fused five-membered rings (D,E). As in other structures, compound nucleus has a cis-trans-cis conformation for the A-B,B-C,C-D ring junctions with rings A, B and C exhibiting chair conformations.
Related literature
Digitoxin and digoxin, the typical clinically used forms (Kreis et al., 1998), are the drugs of choice for the treatment of congestive heart failure, acting as selective inhibitors of the Na+, K+ ATPase enzyme. For the biotransformation of digitoxigenin into digoxigenin and digoxigenone by Fusarium ciliatum and into 1 β-hydroxydigitoxigenin, 7-β-hydroxydigitoxigenin, 8-β-hydroxidigitoxigenin and digitoxigenone by Cochliobolus lunatus, see: Pádua et al. (2005, 2007).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536810038031/hg2696sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810038031/hg2696Isup2.hkl
The Arthrobacter simplex TCCC 11037 (stored in our laboratory) was maintained at 277 K on a slant containing glucose 10.0 g/L, yeast extract 10.0 g L-1 and agar 20.0 g L-1 (pH = 7.2). Seed media consists of glucose 10.0 g/L, corn slurry 10.0 g/L, peptone 5.0 g/L and KH2PO4 2.5 g/L (pH = 7.2).
The Arthrobacter simplex (ASP) cells were prepared in two consecutive cultivation steps (18 h for seed culture and 24 h for cell incubation, respectively) in shake flasks. The whole ASP culture using 5% (v/v) of seed culture was grown in 250 ml shake flasks containing 30 ml culture media on a rotary shaker (160 rpm) at 305 K. Digoxigenin dissolved in ethanol (50 g L-1) and distributed among the flasks (0.34 g/L),and then the reaction was allowed to proceed for 7 days at 307 K. The biotransformation products were sequentially extracted with ethyl acetate (3 × 100 ml) in a separator funnel and the solvent was vacuum removed at 333 K, until a residue was produced. The crude extracts were purified by Si gel column using chloroform/methanol (25:1, v/v). The white power was diffused with petroleum ether/acetone (5:3, v/v) at room temperature. Colourless prism crystals were obtained.
The C-bound H atoms were geometrically placed (C–H = 0.96Å for methyl, 0.97 Å for methylene and 0.93Å for C(sp2), respectively) and refined as riding with Uiso(H) = 1.5Ueq(C) for methyl and Uiso(H) = 1.2Ueq(C) for others. The H atoms of hyadroxyl were geometrically placed O–H = 0.82Å and refined as riding with Uiso(H) = 1.5Ueq(O). The water H atoms were located from a difference map and refined freely.
Digitoxin and digoxin, the typical clinically used forms (Kreis et al., 1998), are the drugs of choice for the treatment of congestive heart failure, acting as selective inhibitors of the Na+, K+ ATPase enzyme. Digitoxigenin has been biotransformed into digoxigenin and digoxigenone by Fusarium ciliatum and into 1 beta-hydroxydigitoxigenin, 7 beta-hydroxydigitoxigenin, 8 beta-hydroxidigitoxigenin, and digitoxigenone by Cochliobolus lunatus (Pádua et al., 2005; Pádua et al., 2007). In this paper, we studied the biotransformation of digoxigenin by Arthrobacter simplex and reported
of the compound digoxigenone.The
is shown in Fig. 1. The consists of an digoxigenone molecule and one water molecule. Compound digoxigenone has three fused six-membered rings (A/B/C) and two non-fused five-membered rings (D/E). As in other structures the A, B and C rings have a chair conformation. The 12-hydroxy is beta configuration with the torsion angles C9—C11—C12—O2 = -179.6 (2)°. The 14-hydroxy is beta configuration with the torsion angles C7—C8—C14—O3 = -64.4 (3)°. The orientation of the lactone ring is determined by the torsion angle C(13)—C(17)—C(20)—C(22) = -113.1 (3)°.In the crystal packing (Fig. 2), X-ray analysis indicates that there were three types of intermolecular hydrogen bonds contributed to the formation of three-dimensional supramolecular structure: between solvent water molecule and carbonyl of adjacent digoxigenone molecule, hydroxyl of digoxigenone molecule and hydroxyl of adjacent digoxigenone molecule, and hydroxyl of digoxigenone molecule and solvent water molecule. The hydrogen bonding parameters are O(6)—H(6 A)···O(1)#3, 2.800 (3), 173.7; O(6)—H(6B)···O(5)#4, 2.742 (3), 160.3; O(2)—H(2)···O(6)#1 2.805 (2), 172.7; and O(3)—H(3)···O(2)#2, 2.901 (2), 163.7. (Symmetry code: #1 x - 1,y,z - 1; #2 x + 1,y,z; #3 x + 1,y + 1,z; #4 x,y - 1,z + 1).
Digitoxin and digoxin, the typical clinically used forms (Kreis et al., 1998), are the drugs of choice for the treatment of congestive heart failure, acting as selective inhibitors of the Na+, K+ ATPase enzyme. For the biotransformation of digitoxigenin into digoxigenin and digoxigenone by Fusarium ciliatum and into 1 beta-hydroxydigitoxigenin, 7-β-hydroxydigitoxigenin, 8-β-hydroxidigitoxigenin and digitoxigenone by Cochliobolus lunatus, see: Pádua et al. (2005, 2007).
Data collection: CrystalClear (Rigaku, 2005); cell
CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Perspective view of the title compound (noncoordinated water molecule was omitted for clarity) | |
Fig. 2. View of the packing of the title compound |
C23H30O5·H2O | Z = 1 |
Mr = 404.49 | F(000) = 218 |
Triclinic, P1 | Dx = 1.302 Mg m−3 |
Hall symbol: P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.4017 (15) Å | Cell parameters from 1642 reflections |
b = 7.7450 (15) Å | θ = 2.1–27.8° |
c = 10.215 (2) Å | µ = 0.09 mm−1 |
α = 99.51 (3)° | T = 293 K |
β = 94.70 (3)° | Prism, colourless |
γ = 114.97 (3)° | 0.32 × 0.26 × 0.20 mm |
V = 516.0 (2) Å3 |
Rigaku Saturn CCD area-detector diffractometer | 1809 independent reflections |
Radiation source: rotating anode | 1443 reflections with I > 2σ(I) |
Confocal monochromator | Rint = 0.035 |
Detector resolution: 7.31 pixels mm-1 | θmax = 25.0°, θmin = 2.1° |
ω and φ scans | h = −8→8 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | k = −9→8 |
Tmin = 0.971, Tmax = 0.982 | l = −12→12 |
5251 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.034 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.082 | w = 1/[σ2(Fo2) + (0.0504P)2 + 0.010P] where P = (Fo2 + 2Fc2)/3 |
S = 1.00 | (Δ/σ)max < 0.001 |
1809 reflections | Δρmax = 0.15 e Å−3 |
275 parameters | Δρmin = −0.14 e Å−3 |
6 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.43 (3) |
C23H30O5·H2O | γ = 114.97 (3)° |
Mr = 404.49 | V = 516.0 (2) Å3 |
Triclinic, P1 | Z = 1 |
a = 7.4017 (15) Å | Mo Kα radiation |
b = 7.7450 (15) Å | µ = 0.09 mm−1 |
c = 10.215 (2) Å | T = 293 K |
α = 99.51 (3)° | 0.32 × 0.26 × 0.20 mm |
β = 94.70 (3)° |
Rigaku Saturn CCD area-detector diffractometer | 1809 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | 1443 reflections with I > 2σ(I) |
Tmin = 0.971, Tmax = 0.982 | Rint = 0.035 |
5251 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 6 restraints |
wR(F2) = 0.082 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.15 e Å−3 |
1809 reflections | Δρmin = −0.14 e Å−3 |
275 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | −0.0073 (4) | 0.3043 (5) | 0.5686 (3) | 0.0474 (8) | |
H1A | −0.1000 | 0.3610 | 0.5551 | 0.057* | |
H1B | −0.0281 | 0.2103 | 0.4864 | 0.057* | |
C2 | −0.0581 (5) | 0.1979 (5) | 0.6826 (3) | 0.0566 (9) | |
H2A | −0.0574 | 0.2868 | 0.7618 | 0.068* | |
H2B | −0.1931 | 0.0907 | 0.6569 | 0.068* | |
C3 | 0.0884 (5) | 0.1203 (5) | 0.7161 (3) | 0.0562 (9) | |
C4 | 0.2931 (5) | 0.2275 (5) | 0.6930 (3) | 0.0548 (8) | |
H4 | 0.3868 | 0.1813 | 0.7137 | 0.066* | |
C5 | 0.3553 (4) | 0.3895 (4) | 0.6435 (3) | 0.0394 (7) | |
C6 | 0.5751 (4) | 0.5096 (5) | 0.6423 (3) | 0.0510 (8) | |
H6A | 0.6496 | 0.4382 | 0.6646 | 0.061* | |
H6B | 0.6252 | 0.6295 | 0.7107 | 0.061* | |
C7 | 0.6133 (4) | 0.5598 (5) | 0.5056 (3) | 0.0426 (7) | |
H7A | 0.5823 | 0.4415 | 0.4395 | 0.051* | |
H7B | 0.7552 | 0.6476 | 0.5118 | 0.051* | |
C8 | 0.4846 (4) | 0.6561 (4) | 0.4589 (3) | 0.0302 (6) | |
H8 | 0.5236 | 0.7780 | 0.5253 | 0.036* | |
C9 | 0.2593 (3) | 0.5255 (4) | 0.4572 (3) | 0.0299 (6) | |
H9 | 0.2219 | 0.4043 | 0.3906 | 0.036* | |
C10 | 0.2105 (4) | 0.4666 (3) | 0.5934 (2) | 0.0321 (6) | |
C11 | 0.1312 (4) | 0.6216 (4) | 0.4064 (3) | 0.0380 (7) | |
H11A | −0.0108 | 0.5345 | 0.4005 | 0.046* | |
H11B | 0.1622 | 0.7411 | 0.4712 | 0.046* | |
C12 | 0.1679 (4) | 0.6685 (4) | 0.2704 (3) | 0.0333 (6) | |
H12 | 0.1254 | 0.5461 | 0.2038 | 0.040* | |
C13 | 0.3939 (4) | 0.8041 (3) | 0.2682 (2) | 0.0302 (6) | |
C14 | 0.5248 (4) | 0.7098 (4) | 0.3221 (3) | 0.0311 (6) | |
C15 | 0.4892 (4) | 0.5418 (4) | 0.2060 (3) | 0.0364 (6) | |
H15A | 0.3658 | 0.4274 | 0.2068 | 0.044* | |
H15B | 0.6013 | 0.5080 | 0.2116 | 0.044* | |
C16 | 0.4720 (4) | 0.6179 (4) | 0.0779 (3) | 0.0441 (7) | |
H16A | 0.3672 | 0.5153 | 0.0083 | 0.053* | |
H16B | 0.5991 | 0.6614 | 0.0442 | 0.053* | |
C17 | 0.4186 (4) | 0.7903 (4) | 0.1164 (3) | 0.0350 (6) | |
H17 | 0.2852 | 0.7522 | 0.0644 | 0.042* | |
C18 | 0.2350 (5) | 0.6415 (5) | 0.7033 (3) | 0.0507 (8) | |
H18A | 0.2182 | 0.6027 | 0.7878 | 0.076* | |
H18B | 0.1346 | 0.6836 | 0.6789 | 0.076* | |
H18C | 0.3674 | 0.7469 | 0.7116 | 0.076* | |
C19 | 0.4521 (4) | 1.0101 (4) | 0.3480 (3) | 0.0418 (7) | |
H19A | 0.5941 | 1.0896 | 0.3529 | 0.063* | |
H19B | 0.4220 | 1.0049 | 0.4373 | 0.063* | |
H19C | 0.3767 | 1.0654 | 0.3039 | 0.063* | |
C20 | 0.5633 (4) | 0.9736 (4) | 0.0803 (3) | 0.0380 (6) | |
C21 | 0.7889 (4) | 1.0689 (4) | 0.1180 (4) | 0.0567 (9) | |
H21A | 0.8296 | 1.1136 | 0.2150 | 0.068* | |
H21B | 0.8434 | 0.9787 | 0.0863 | 0.068* | |
C22 | 0.5139 (5) | 1.0757 (4) | 0.0035 (3) | 0.0488 (8) | |
H22 | 0.3828 | 1.0478 | −0.0331 | 0.059* | |
C23 | 0.6953 (5) | 1.2364 (4) | −0.0143 (3) | 0.0523 (8) | |
O1 | 0.0400 (5) | −0.0230 (4) | 0.7666 (3) | 0.0905 (10) | |
O2 | 0.0392 (3) | 0.7578 (3) | 0.2377 (2) | 0.0497 (6) | |
H2 | 0.0251 | 0.7534 | 0.1566 | 0.075* | |
O3 | 0.7324 (2) | 0.8562 (2) | 0.33978 (19) | 0.0392 (5) | |
H3 | 0.8017 | 0.8051 | 0.3095 | 0.059* | |
O4 | 0.8586 (3) | 1.2327 (3) | 0.0526 (2) | 0.0610 (6) | |
O5 | 0.7166 (4) | 1.3617 (4) | −0.0773 (3) | 0.0797 (8) | |
O6 | 0.9639 (4) | 0.7538 (4) | 0.9630 (3) | 0.0661 (7) | |
H1W | 0.979 (7) | 0.816 (5) | 0.899 (3) | 0.105 (15)* | |
H2W | 0.901 (7) | 0.6285 (16) | 0.937 (4) | 0.13 (2)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0383 (16) | 0.0560 (19) | 0.0500 (19) | 0.0171 (14) | 0.0123 (14) | 0.0255 (16) |
C2 | 0.0578 (19) | 0.053 (2) | 0.061 (2) | 0.0180 (16) | 0.0204 (16) | 0.0302 (16) |
C3 | 0.076 (2) | 0.0477 (19) | 0.049 (2) | 0.0266 (17) | 0.0187 (17) | 0.0210 (16) |
C4 | 0.070 (2) | 0.063 (2) | 0.056 (2) | 0.0440 (18) | 0.0204 (16) | 0.0306 (17) |
C5 | 0.0454 (16) | 0.0485 (17) | 0.0328 (16) | 0.0267 (14) | 0.0062 (12) | 0.0149 (13) |
C6 | 0.0421 (17) | 0.075 (2) | 0.0494 (19) | 0.0327 (16) | 0.0062 (14) | 0.0296 (17) |
C7 | 0.0332 (16) | 0.0563 (18) | 0.0503 (18) | 0.0265 (14) | 0.0103 (13) | 0.0232 (15) |
C8 | 0.0299 (13) | 0.0342 (14) | 0.0291 (14) | 0.0165 (11) | 0.0042 (10) | 0.0076 (11) |
C9 | 0.0297 (13) | 0.0332 (14) | 0.0311 (14) | 0.0168 (11) | 0.0066 (10) | 0.0099 (11) |
C10 | 0.0342 (15) | 0.0356 (16) | 0.0300 (15) | 0.0179 (12) | 0.0057 (11) | 0.0089 (12) |
C11 | 0.0336 (15) | 0.0534 (17) | 0.0390 (16) | 0.0261 (13) | 0.0104 (12) | 0.0205 (14) |
C12 | 0.0263 (13) | 0.0449 (16) | 0.0383 (16) | 0.0213 (12) | 0.0098 (11) | 0.0166 (13) |
C13 | 0.0309 (13) | 0.0318 (14) | 0.0306 (15) | 0.0156 (11) | 0.0074 (11) | 0.0083 (11) |
C14 | 0.0234 (13) | 0.0334 (14) | 0.0380 (15) | 0.0127 (11) | 0.0087 (11) | 0.0096 (12) |
C15 | 0.0371 (14) | 0.0359 (15) | 0.0399 (16) | 0.0179 (12) | 0.0138 (12) | 0.0093 (13) |
C16 | 0.0528 (17) | 0.0400 (15) | 0.0382 (17) | 0.0183 (13) | 0.0133 (13) | 0.0083 (13) |
C17 | 0.0322 (13) | 0.0384 (15) | 0.0311 (14) | 0.0117 (12) | 0.0056 (11) | 0.0096 (12) |
C18 | 0.075 (2) | 0.0529 (19) | 0.0376 (17) | 0.0377 (18) | 0.0189 (15) | 0.0126 (15) |
C19 | 0.0480 (16) | 0.0357 (15) | 0.0439 (16) | 0.0210 (13) | 0.0088 (13) | 0.0076 (13) |
C20 | 0.0429 (15) | 0.0383 (15) | 0.0328 (15) | 0.0169 (12) | 0.0113 (12) | 0.0088 (12) |
C21 | 0.0425 (18) | 0.049 (2) | 0.074 (2) | 0.0101 (15) | 0.0141 (15) | 0.0295 (17) |
C22 | 0.055 (2) | 0.0499 (18) | 0.0475 (18) | 0.0235 (16) | 0.0153 (14) | 0.0210 (15) |
C23 | 0.071 (2) | 0.0427 (18) | 0.0470 (19) | 0.0238 (16) | 0.0232 (17) | 0.0179 (15) |
O1 | 0.119 (2) | 0.0708 (17) | 0.107 (2) | 0.0453 (16) | 0.0475 (19) | 0.0631 (18) |
O2 | 0.0421 (11) | 0.0820 (15) | 0.0485 (12) | 0.0417 (11) | 0.0136 (10) | 0.0331 (12) |
O3 | 0.0267 (9) | 0.0401 (11) | 0.0502 (12) | 0.0131 (8) | 0.0086 (8) | 0.0119 (9) |
O4 | 0.0545 (14) | 0.0495 (13) | 0.0670 (16) | 0.0068 (10) | 0.0171 (11) | 0.0236 (11) |
O5 | 0.108 (2) | 0.0596 (15) | 0.083 (2) | 0.0347 (15) | 0.0367 (15) | 0.0438 (14) |
O6 | 0.0627 (15) | 0.0775 (19) | 0.0564 (15) | 0.0232 (15) | 0.0116 (12) | 0.0316 (14) |
C1—C2 | 1.518 (4) | C13—C19 | 1.526 (4) |
C1—C10 | 1.536 (4) | C13—C14 | 1.555 (3) |
C1—H1A | 0.9700 | C13—C17 | 1.567 (3) |
C1—H1B | 0.9700 | C14—O3 | 1.448 (3) |
C2—C3 | 1.487 (4) | C14—C15 | 1.523 (4) |
C2—H2A | 0.9700 | C15—C16 | 1.538 (4) |
C2—H2B | 0.9700 | C15—H15A | 0.9700 |
C3—O1 | 1.229 (4) | C15—H15B | 0.9700 |
C3—C4 | 1.450 (5) | C16—C17 | 1.547 (4) |
C4—C5 | 1.342 (4) | C16—H16A | 0.9700 |
C4—H4 | 0.9300 | C16—H16B | 0.9700 |
C5—C6 | 1.497 (4) | C17—C20 | 1.501 (4) |
C5—C10 | 1.523 (3) | C17—H17 | 0.9800 |
C6—C7 | 1.527 (4) | C18—H18A | 0.9600 |
C6—H6A | 0.9700 | C18—H18B | 0.9600 |
C6—H6B | 0.9700 | C18—H18C | 0.9600 |
C7—C8 | 1.528 (4) | C19—H19A | 0.9600 |
C7—H7A | 0.9700 | C19—H19B | 0.9600 |
C7—H7B | 0.9700 | C19—H19C | 0.9600 |
C8—C14 | 1.539 (3) | C20—C22 | 1.333 (4) |
C8—C9 | 1.540 (3) | C20—C21 | 1.497 (4) |
C8—H8 | 0.9800 | C21—O4 | 1.451 (3) |
C9—C11 | 1.537 (3) | C21—H21A | 0.9700 |
C9—C10 | 1.558 (3) | C21—H21B | 0.9700 |
C9—H9 | 0.9800 | C22—C23 | 1.445 (4) |
C10—C18 | 1.544 (4) | C22—H22 | 0.9300 |
C11—C12 | 1.510 (4) | C23—O5 | 1.215 (4) |
C11—H11A | 0.9700 | C23—O4 | 1.352 (4) |
C11—H11B | 0.9700 | O2—H2 | 0.8200 |
C12—O2 | 1.442 (3) | O3—H3 | 0.8200 |
C12—C13 | 1.560 (3) | O6—H1W | 0.861 (11) |
C12—H12 | 0.9800 | O6—H2W | 0.862 (11) |
C2—C1—C10 | 113.8 (2) | C13—C12—H12 | 108.7 |
C2—C1—H1A | 108.8 | C19—C13—C14 | 113.6 (2) |
C10—C1—H1A | 108.8 | C19—C13—C12 | 110.0 (2) |
C2—C1—H1B | 108.8 | C14—C13—C12 | 108.13 (19) |
C10—C1—H1B | 108.8 | C19—C13—C17 | 114.5 (2) |
H1A—C1—H1B | 107.7 | C14—C13—C17 | 103.33 (19) |
C3—C2—C1 | 111.8 (3) | C12—C13—C17 | 106.8 (2) |
C3—C2—H2A | 109.3 | O3—C14—C15 | 108.79 (19) |
C1—C2—H2A | 109.3 | O3—C14—C8 | 107.92 (19) |
C3—C2—H2B | 109.3 | C15—C14—C8 | 116.0 (2) |
C1—C2—H2B | 109.3 | O3—C14—C13 | 105.59 (19) |
H2A—C2—H2B | 107.9 | C15—C14—C13 | 104.0 (2) |
O1—C3—C4 | 121.6 (3) | C8—C14—C13 | 113.95 (19) |
O1—C3—C2 | 121.4 (3) | C14—C15—C16 | 105.1 (2) |
C4—C3—C2 | 116.9 (3) | C14—C15—H15A | 110.7 |
C5—C4—C3 | 123.9 (3) | C16—C15—H15A | 110.7 |
C5—C4—H4 | 118.1 | C14—C15—H15B | 110.7 |
C3—C4—H4 | 118.1 | C16—C15—H15B | 110.7 |
C4—C5—C6 | 120.8 (3) | H15A—C15—H15B | 108.8 |
C4—C5—C10 | 122.4 (3) | C15—C16—C17 | 107.2 (2) |
C6—C5—C10 | 116.7 (2) | C15—C16—H16A | 110.3 |
C5—C6—C7 | 112.2 (2) | C17—C16—H16A | 110.3 |
C5—C6—H6A | 109.2 | C15—C16—H16B | 110.3 |
C7—C6—H6A | 109.2 | C17—C16—H16B | 110.3 |
C5—C6—H6B | 109.2 | H16A—C16—H16B | 108.5 |
C7—C6—H6B | 109.2 | C20—C17—C16 | 112.9 (2) |
H6A—C6—H6B | 107.9 | C20—C17—C13 | 116.6 (2) |
C6—C7—C8 | 111.6 (2) | C16—C17—C13 | 105.62 (19) |
C6—C7—H7A | 109.3 | C20—C17—H17 | 107.1 |
C8—C7—H7A | 109.3 | C16—C17—H17 | 107.1 |
C6—C7—H7B | 109.3 | C13—C17—H17 | 107.1 |
C8—C7—H7B | 109.3 | C10—C18—H18A | 109.5 |
H7A—C7—H7B | 108.0 | C10—C18—H18B | 109.5 |
C7—C8—C14 | 111.8 (2) | H18A—C18—H18B | 109.5 |
C7—C8—C9 | 110.3 (2) | C10—C18—H18C | 109.5 |
C14—C8—C9 | 112.24 (18) | H18A—C18—H18C | 109.5 |
C7—C8—H8 | 107.4 | H18B—C18—H18C | 109.5 |
C14—C8—H8 | 107.4 | C13—C19—H19A | 109.5 |
C9—C8—H8 | 107.4 | C13—C19—H19B | 109.5 |
C11—C9—C8 | 109.72 (19) | H19A—C19—H19B | 109.5 |
C11—C9—C10 | 112.22 (19) | C13—C19—H19C | 109.5 |
C8—C9—C10 | 114.26 (19) | H19A—C19—H19C | 109.5 |
C11—C9—H9 | 106.7 | H19B—C19—H19C | 109.5 |
C8—C9—H9 | 106.7 | C22—C20—C21 | 107.7 (2) |
C10—C9—H9 | 106.7 | C22—C20—C17 | 125.9 (3) |
C5—C10—C1 | 109.3 (2) | C21—C20—C17 | 126.4 (2) |
C5—C10—C18 | 107.8 (2) | O4—C21—C20 | 105.0 (2) |
C1—C10—C18 | 110.2 (2) | O4—C21—H21A | 110.7 |
C5—C10—C9 | 109.2 (2) | C20—C21—H21A | 110.7 |
C1—C10—C9 | 108.2 (2) | O4—C21—H21B | 110.7 |
C18—C10—C9 | 112.1 (2) | C20—C21—H21B | 110.7 |
C12—C11—C9 | 112.8 (2) | H21A—C21—H21B | 108.8 |
C12—C11—H11A | 109.0 | C20—C22—C23 | 109.6 (3) |
C9—C11—H11A | 109.0 | C20—C22—H22 | 125.2 |
C12—C11—H11B | 109.0 | C23—C22—H22 | 125.2 |
C9—C11—H11B | 109.0 | O5—C23—O4 | 120.3 (3) |
H11A—C11—H11B | 107.8 | O5—C23—C22 | 130.4 (3) |
O2—C12—C11 | 106.0 (2) | O4—C23—C22 | 109.3 (2) |
O2—C12—C13 | 111.4 (2) | C12—O2—H2 | 109.5 |
C11—C12—C13 | 113.1 (2) | C14—O3—H3 | 109.5 |
O2—C12—H12 | 108.7 | C23—O4—C21 | 108.4 (2) |
C11—C12—H12 | 108.7 | H1W—O6—H2W | 114.3 (19) |
C10—C1—C2—C3 | −54.0 (4) | C7—C8—C14—O3 | −64.4 (3) |
C1—C2—C3—O1 | −153.4 (3) | C9—C8—C14—O3 | 171.01 (18) |
C1—C2—C3—C4 | 29.7 (4) | C7—C8—C14—C15 | 57.9 (3) |
O1—C3—C4—C5 | −177.1 (3) | C9—C8—C14—C15 | −66.7 (3) |
C2—C3—C4—C5 | −0.2 (5) | C7—C8—C14—C13 | 178.7 (2) |
C3—C4—C5—C6 | 170.4 (3) | C9—C8—C14—C13 | 54.1 (3) |
C3—C4—C5—C10 | −6.1 (5) | C19—C13—C14—O3 | −48.0 (3) |
C4—C5—C6—C7 | 131.9 (3) | C12—C13—C14—O3 | −170.35 (19) |
C10—C5—C6—C7 | −51.3 (4) | C17—C13—C14—O3 | 76.7 (2) |
C5—C6—C7—C8 | 53.6 (4) | C19—C13—C14—C15 | −162.5 (2) |
C6—C7—C8—C14 | 179.2 (2) | C12—C13—C14—C15 | 75.2 (2) |
C6—C7—C8—C9 | −55.2 (3) | C17—C13—C14—C15 | −37.8 (2) |
C7—C8—C9—C11 | −178.5 (3) | C19—C13—C14—C8 | 70.3 (3) |
C14—C8—C9—C11 | −53.1 (3) | C12—C13—C14—C8 | −52.1 (3) |
C7—C8—C9—C10 | 54.5 (3) | C17—C13—C14—C8 | −165.0 (2) |
C14—C8—C9—C10 | 179.9 (2) | O3—C14—C15—C16 | −75.9 (2) |
C4—C5—C10—C1 | −17.3 (4) | C8—C14—C15—C16 | 162.2 (2) |
C6—C5—C10—C1 | 166.1 (3) | C13—C14—C15—C16 | 36.3 (2) |
C4—C5—C10—C18 | 102.6 (3) | C14—C15—C16—C17 | −20.6 (3) |
C6—C5—C10—C18 | −74.1 (3) | C15—C16—C17—C20 | 125.5 (2) |
C4—C5—C10—C9 | −135.4 (3) | C15—C16—C17—C13 | −3.0 (3) |
C6—C5—C10—C9 | 47.9 (3) | C19—C13—C17—C20 | 22.6 (3) |
C2—C1—C10—C5 | 46.7 (3) | C14—C13—C17—C20 | −101.5 (2) |
C2—C1—C10—C18 | −71.5 (3) | C12—C13—C17—C20 | 144.6 (2) |
C2—C1—C10—C9 | 165.6 (2) | C19—C13—C17—C16 | 148.9 (2) |
C11—C9—C10—C5 | −175.0 (2) | C14—C13—C17—C16 | 24.8 (2) |
C8—C9—C10—C5 | −49.3 (3) | C12—C13—C17—C16 | −89.1 (2) |
C11—C9—C10—C1 | 66.1 (3) | C16—C17—C20—C22 | 124.3 (3) |
C8—C9—C10—C1 | −168.16 (19) | C13—C17—C20—C22 | −113.1 (3) |
C11—C9—C10—C18 | −55.6 (3) | C16—C17—C20—C21 | −52.4 (4) |
C8—C9—C10—C18 | 70.1 (3) | C13—C17—C20—C21 | 70.1 (4) |
C8—C9—C11—C12 | 55.3 (3) | C22—C20—C21—O4 | −0.7 (3) |
C10—C9—C11—C12 | −176.6 (2) | C17—C20—C21—O4 | 176.6 (2) |
C9—C11—C12—O2 | −179.6 (2) | C21—C20—C22—C23 | 0.4 (3) |
C9—C11—C12—C13 | −57.3 (3) | C17—C20—C22—C23 | −176.9 (2) |
O2—C12—C13—C19 | 48.2 (3) | C20—C22—C23—O5 | 179.4 (3) |
C11—C12—C13—C19 | −71.1 (3) | C20—C22—C23—O4 | 0.1 (3) |
O2—C12—C13—C14 | 172.8 (2) | O5—C23—O4—C21 | −179.9 (3) |
C11—C12—C13—C14 | 53.5 (3) | C22—C23—O4—C21 | −0.5 (3) |
O2—C12—C13—C17 | −76.6 (2) | C20—C21—O4—C23 | 0.7 (3) |
C11—C12—C13—C17 | 164.1 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O6i | 0.82 | 1.99 | 2.808 (3) | 173 |
O3—H3···O2ii | 0.82 | 2.10 | 2.900 (3) | 164 |
O6—H1W···O1iii | 0.86 (1) | 1.94 (1) | 2.801 (3) | 174 (4) |
O6—H2W···O5iv | 0.86 (1) | 1.91 (2) | 2.741 (4) | 162 (5) |
Symmetry codes: (i) x−1, y, z−1; (ii) x+1, y, z; (iii) x+1, y+1, z; (iv) x, y−1, z+1. |
Experimental details
Crystal data | |
Chemical formula | C23H30O5·H2O |
Mr | 404.49 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 7.4017 (15), 7.7450 (15), 10.215 (2) |
α, β, γ (°) | 99.51 (3), 94.70 (3), 114.97 (3) |
V (Å3) | 516.0 (2) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.32 × 0.26 × 0.20 |
Data collection | |
Diffractometer | Rigaku Saturn CCD area-detector |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2005) |
Tmin, Tmax | 0.971, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5251, 1809, 1443 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.082, 1.00 |
No. of reflections | 1809 |
No. of parameters | 275 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.15, −0.14 |
Computer programs: CrystalClear (Rigaku, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O6i | 0.82 | 1.99 | 2.808 (3) | 172.7 |
O3—H3···O2ii | 0.82 | 2.10 | 2.900 (3) | 163.6 |
O6—H1W···O1iii | 0.861 (11) | 1.943 (11) | 2.801 (3) | 174 (4) |
O6—H2W···O5iv | 0.862 (11) | 1.908 (18) | 2.741 (4) | 162 (5) |
Symmetry codes: (i) x−1, y, z−1; (ii) x+1, y, z; (iii) x+1, y+1, z; (iv) x, y−1, z+1. |
Acknowledgements
This work was supported by the Natural Science Foundation of Tianjin (No. 08JCZDJC15200)
References
Kreis, W., Hensel, A. & Stuhlemmer, U. (1998). Planta Med. 64, 491–499. Web of Science CrossRef CAS Google Scholar
Pádua, R. M., Oliveira, A. B., Souza Filho, J. D., Takahashi, J. A., Silva, M. A. & Braga, F. C. (2007). J. Braz. Chem. Soc. 18, 1303–1310. Google Scholar
Pádua, R. M., Oliveira, A. B., Souza Filho, J. D., Vieira, G. J., Takahashi, J. A. & Braga, F. C. (2005). J. Braz. Chem. Soc. 16, 614–619. Google Scholar
Rigaku (2005). CrystalClear. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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Digitoxin and digoxin, the typical clinically used forms (Kreis et al., 1998), are the drugs of choice for the treatment of congestive heart failure, acting as selective inhibitors of the Na+, K+ ATPase enzyme. Digitoxigenin has been biotransformed into digoxigenin and digoxigenone by Fusarium ciliatum and into 1 beta-hydroxydigitoxigenin, 7 beta-hydroxydigitoxigenin, 8 beta-hydroxidigitoxigenin, and digitoxigenone by Cochliobolus lunatus (Pádua et al., 2005; Pádua et al., 2007). In this paper, we studied the biotransformation of digoxigenin by Arthrobacter simplex and reported crystal structure of the compound digoxigenone.
The crystal structure is shown in Fig. 1. The crystal structure consists of an digoxigenone molecule and one water molecule. Compound digoxigenone has three fused six-membered rings (A/B/C) and two non-fused five-membered rings (D/E). As in other structures the A, B and C rings have a chair conformation. The 12-hydroxy is beta configuration with the torsion angles C9—C11—C12—O2 = -179.6 (2)°. The 14-hydroxy is beta configuration with the torsion angles C7—C8—C14—O3 = -64.4 (3)°. The orientation of the lactone ring is determined by the torsion angle C(13)—C(17)—C(20)—C(22) = -113.1 (3)°.
In the crystal packing (Fig. 2), X-ray analysis indicates that there were three types of intermolecular hydrogen bonds contributed to the formation of three-dimensional supramolecular structure: between solvent water molecule and carbonyl of adjacent digoxigenone molecule, hydroxyl of digoxigenone molecule and hydroxyl of adjacent digoxigenone molecule, and hydroxyl of digoxigenone molecule and solvent water molecule. The hydrogen bonding parameters are O(6)—H(6 A)···O(1)#3, 2.800 (3), 173.7; O(6)—H(6B)···O(5)#4, 2.742 (3), 160.3; O(2)—H(2)···O(6)#1 2.805 (2), 172.7; and O(3)—H(3)···O(2)#2, 2.901 (2), 163.7. (Symmetry code: #1 x - 1,y,z - 1; #2 x + 1,y,z; #3 x + 1,y + 1,z; #4 x,y - 1,z + 1).