organic compounds
1,4-Diazoniacyclohexane bis(3-carboxypyrazine-2-carboxylate) dihydrate
aDepartment of Chemistry, School of Sciences, Ferdowsi University of Mashhad, Mashhad 917791436, Iran, and bDepartment of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, Brno, 625 00, Czech Republic
*Correspondence e-mail: heshtiagh@ferdowsi.um.ac.ir, mirzaei487@yahoo.com
In the title compound, C4H12N22+·2C6H3N2O4−·2H2O or (1,4-dacH2)(pyzdcH)2·2H2O, the complete dication is generated by crystallographic inversion symmetry. An intramolecular O—H⋯O hydrogen bond occurs in the anion. In the crystal, O—H⋯O, O—H⋯N, N—H⋯O and N—H⋯N hydrogen bonds result in the formation of a three-dimensional network. Additionally, π–π stacking interactions between the pyrazine rings with centroid–centroid distances of 3.7065 (2) Å are observed.
Related literature
For related structures dereived from pyrazine-2,3-dicarboxylic acid with various organic bases, see: Eshtiagh-Hosseini et al. (2010a,b,c,d). For the biological properties of derivatives of 1,4-diazonia-cyclohexane derivatives, see Iqbal et al. (2001), Greenberg et al. (1981).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Crystal Impact, 2009); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536810040109/im2230sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810040109/im2230Isup2.hkl
The title compound was synthesized via the reaction between pyzdcH2 (0.20 g, 1.1 mmol) and 1,4-dac (0.10 g, 1.1 mmol) in a aqueous solution (10 ml) stirred for 4 h in 338 K. Slow evaporation of the solvent at r.t. yielded (1,4-dacH2)(pyzdcH)2.2H2O as colorless crystals after one week (yield: 30%).
Carbon bound hydrogen atoms were positioned geometrically and refined as riding using standard SHELXTL constraints, with their Uiso set to 1.2Ueq of their parent atoms. Oxygen and nitrogen bound hydrogen atoms were located in a difference Fourier map and refined isotropically.
1,4-Dac derivatives are a broad class of chemical compounds, many with important pharmacological properties. 1,4-Dac was first introduced as an anthelmimic in 1953 to treat of common roundworms (ascariasis) and pinworms (enterobiasis; oxyuriasis) (Iqbal et al., 2001; Greenberg et al., 1981). The title structure reported herein contains one half of the dicationic fragment (1,4-dacH2)2+, a monoanionic fragment (pyzdcH)- (pyzdcH2 = pyrazine-2,3-dicarboxylic acid) and one solvent water molecule per π···π interactions are present in the between adjacent pyrazine rings with centroid-centroid distances of 3.774 Å (Fig. 3).
(Fig. 1). The center of the 1,4-diazonia-cyclohexane dication represents a crystallographic center of inversion. The shows that just one of the protons of pyrazine-2,3-di-carboxylic acid has been transferred to nitrogen atom of the (1,4-dacH2)2+ ring. Hydrogen bond motifs involving anionic and cationic fragments and solvent water molecules result in the formation a one dimensional chain (Fig. 2). As is obvious from the packing diagram additionalFor related structures dereived from pyrazine-2,3-dicarboxylic acid with various organic bases, see: Eshtiagh-Hosseini et al. (2010a,b,c,d). For the biological properties of derivatives of 1,4-diazonia-cyclohexane derivatives, see Iqbal et al. (2001), Greenberg et al. (1981).
Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell
CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Crystal Impact, 2009); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. Molecular structure of the constituents of the title compound showing the atom labelling scheme. Thermal ellipsoids are presented at the 50% probability level. | |
Fig. 2. A portion of pseudo-1D polymeric chain of the title compound. | |
Fig. 3. Crystal packing of the title compound. |
C4H12N22+·2C6H3N2O4−·2H2O | F(000) = 480 |
Mr = 458.40 | Dx = 1.632 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2589 reflections |
a = 7.7519 (4) Å | θ = 3.0–27.5° |
b = 18.4576 (8) Å | µ = 0.14 mm−1 |
c = 7.0292 (4) Å | T = 120 K |
β = 111.974 (6)° | Prism, colourless |
V = 932.68 (8) Å3 | 0.40 × 0.40 × 0.30 mm |
Z = 2 |
Oxford Diffraction Xcalibur with a Sapphire2 detector diffractometer | 2006 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 1696 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.010 |
Detector resolution: 8.4353 pixels mm-1 | θmax = 27.6°, θmin = 3.0° |
ω scan | h = −9→9 |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | k = −15→23 |
Tmin = 0.990, Tmax = 1.000 | l = −6→8 |
4000 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.087 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0601P)2] where P = (Fo2 + 2Fc2)/3 |
2006 reflections | (Δ/σ)max = 0.001 |
165 parameters | Δρmax = 0.24 e Å−3 |
0 restraints | Δρmin = −0.38 e Å−3 |
C4H12N22+·2C6H3N2O4−·2H2O | V = 932.68 (8) Å3 |
Mr = 458.40 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.7519 (4) Å | µ = 0.14 mm−1 |
b = 18.4576 (8) Å | T = 120 K |
c = 7.0292 (4) Å | 0.40 × 0.40 × 0.30 mm |
β = 111.974 (6)° |
Oxford Diffraction Xcalibur with a Sapphire2 detector diffractometer | 2006 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | 1696 reflections with I > 2σ(I) |
Tmin = 0.990, Tmax = 1.000 | Rint = 0.010 |
4000 measured reflections |
R[F2 > 2σ(F2)] = 0.033 | 0 restraints |
wR(F2) = 0.087 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.24 e Å−3 |
2006 reflections | Δρmin = −0.38 e Å−3 |
165 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.66092 (11) | 0.30115 (5) | 0.67977 (14) | 0.0214 (2) | |
O2 | 0.47664 (11) | 0.38022 (4) | 0.74880 (14) | 0.0213 (2) | |
O3 | 0.70151 (11) | 0.17141 (5) | 0.70969 (13) | 0.0198 (2) | |
O4 | 0.54415 (12) | 0.07636 (5) | 0.74616 (13) | 0.0219 (2) | |
N1 | 0.19076 (13) | 0.29280 (5) | 0.62615 (15) | 0.0149 (2) | |
N2 | 0.22265 (13) | 0.14348 (6) | 0.61232 (14) | 0.0156 (2) | |
N3 | 0.15261 (14) | 0.46005 (6) | 0.64194 (15) | 0.0157 (2) | |
C1 | 0.35741 (15) | 0.26185 (6) | 0.66012 (16) | 0.0126 (2) | |
C2 | 0.04412 (16) | 0.24966 (6) | 0.58448 (18) | 0.0159 (3) | |
H2 | −0.0743 | 0.2704 | 0.5607 | 0.019* | |
C3 | 0.05966 (16) | 0.17478 (7) | 0.57477 (18) | 0.0162 (3) | |
H3 | −0.0487 | 0.1456 | 0.5406 | 0.019* | |
C4 | 0.37356 (15) | 0.18606 (6) | 0.65666 (17) | 0.0133 (3) | |
C5 | 0.51081 (16) | 0.31916 (7) | 0.70094 (17) | 0.0151 (3) | |
C6 | 0.55073 (16) | 0.14025 (7) | 0.70888 (17) | 0.0160 (3) | |
C7 | −0.04171 (16) | 0.44630 (7) | 0.62525 (19) | 0.0190 (3) | |
H7A | −0.0416 | 0.4307 | 0.7600 | 0.023* | |
H7B | −0.0968 | 0.4069 | 0.5252 | 0.023* | |
C8 | 0.15674 (16) | 0.48597 (7) | 0.44316 (18) | 0.0176 (3) | |
H8A | 0.1073 | 0.4478 | 0.3378 | 0.021* | |
H8B | 0.2868 | 0.4961 | 0.4588 | 0.021* | |
O5 | 0.23627 (12) | 0.52146 (5) | 0.03053 (14) | 0.0190 (2) | |
H3B | 0.202 (2) | 0.4944 (9) | 0.742 (2) | 0.027 (4)* | |
H3A | 0.222 (2) | 0.4184 (9) | 0.675 (2) | 0.032 (4)* | |
H5B | 0.271 (2) | 0.4805 (10) | 0.089 (3) | 0.045 (5)* | |
H5A | 0.330 (3) | 0.5564 (11) | 0.092 (3) | 0.071 (6)* | |
H1O | 0.683 (3) | 0.2317 (12) | 0.687 (3) | 0.070 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0147 (4) | 0.0176 (5) | 0.0344 (5) | −0.0009 (4) | 0.0120 (4) | 0.0005 (4) |
O2 | 0.0144 (4) | 0.0146 (5) | 0.0303 (5) | −0.0010 (4) | 0.0032 (4) | −0.0039 (4) |
O3 | 0.0130 (4) | 0.0185 (5) | 0.0284 (5) | 0.0008 (4) | 0.0083 (4) | −0.0032 (4) |
O4 | 0.0200 (5) | 0.0152 (5) | 0.0284 (5) | 0.0037 (4) | 0.0067 (4) | 0.0011 (4) |
N1 | 0.0132 (5) | 0.0164 (5) | 0.0153 (5) | 0.0006 (4) | 0.0054 (4) | 0.0004 (4) |
N2 | 0.0157 (5) | 0.0156 (5) | 0.0164 (5) | −0.0010 (4) | 0.0070 (4) | −0.0007 (4) |
N3 | 0.0141 (5) | 0.0145 (5) | 0.0166 (5) | 0.0030 (4) | 0.0034 (4) | −0.0006 (4) |
C1 | 0.0123 (6) | 0.0155 (6) | 0.0100 (5) | 0.0005 (5) | 0.0041 (4) | 0.0002 (4) |
C2 | 0.0117 (6) | 0.0189 (6) | 0.0173 (6) | 0.0016 (5) | 0.0056 (4) | 0.0017 (5) |
C3 | 0.0131 (6) | 0.0181 (6) | 0.0176 (6) | −0.0023 (5) | 0.0060 (4) | 0.0002 (5) |
C4 | 0.0138 (6) | 0.0158 (6) | 0.0108 (5) | 0.0005 (5) | 0.0052 (4) | −0.0002 (4) |
C5 | 0.0132 (6) | 0.0150 (6) | 0.0144 (6) | −0.0005 (5) | 0.0022 (4) | 0.0012 (5) |
C6 | 0.0150 (6) | 0.0168 (6) | 0.0149 (6) | 0.0007 (5) | 0.0042 (4) | −0.0041 (4) |
C7 | 0.0174 (6) | 0.0179 (6) | 0.0222 (6) | −0.0003 (5) | 0.0080 (5) | 0.0037 (5) |
C8 | 0.0158 (6) | 0.0208 (6) | 0.0162 (6) | 0.0024 (5) | 0.0060 (5) | −0.0009 (5) |
O5 | 0.0186 (5) | 0.0156 (5) | 0.0215 (5) | −0.0016 (4) | 0.0059 (4) | 0.0002 (4) |
O1—C5 | 1.2713 (14) | C1—C4 | 1.4054 (16) |
O1—H1O | 1.29 (2) | C1—C5 | 1.5362 (16) |
O2—C5 | 1.2330 (14) | C2—C3 | 1.3912 (16) |
O3—C6 | 1.3007 (14) | C2—H2 | 0.9500 |
O3—H1O | 1.13 (2) | C3—H3 | 0.9500 |
O4—C6 | 1.2133 (15) | C4—C6 | 1.5359 (16) |
N1—C2 | 1.3277 (15) | C7—C8i | 1.5061 (17) |
N1—C1 | 1.3496 (14) | C7—H7A | 0.9900 |
N2—C3 | 1.3230 (15) | C7—H7B | 0.9900 |
N2—C4 | 1.3455 (14) | C8—C7i | 1.5061 (17) |
N3—C7 | 1.4883 (15) | C8—H8A | 0.9900 |
N3—C8 | 1.4886 (15) | C8—H8B | 0.9900 |
N3—H3B | 0.915 (16) | O5—H5B | 0.852 (19) |
N3—H3A | 0.917 (17) | O5—H5A | 0.95 (2) |
C5—O1—H1O | 111.5 (8) | C1—C4—C6 | 128.41 (10) |
C6—O3—H1O | 111.6 (10) | O2—C5—O1 | 124.78 (11) |
C2—N1—C1 | 117.97 (10) | O2—C5—C1 | 116.74 (10) |
C3—N2—C4 | 118.28 (10) | O1—C5—C1 | 118.47 (10) |
C7—N3—C8 | 110.95 (9) | O4—C6—O3 | 122.63 (11) |
C7—N3—H3B | 107.4 (9) | O4—C6—C4 | 118.73 (10) |
C8—N3—H3B | 110.3 (9) | O3—C6—C4 | 118.64 (10) |
C7—N3—H3A | 110.9 (9) | N3—C7—C8i | 110.15 (10) |
C8—N3—H3A | 107.0 (9) | N3—C7—H7A | 109.6 |
H3B—N3—H3A | 110.4 (14) | C8i—C7—H7A | 109.6 |
N1—C1—C4 | 120.25 (10) | N3—C7—H7B | 109.6 |
N1—C1—C5 | 111.37 (10) | C8i—C7—H7B | 109.6 |
C4—C1—C5 | 128.37 (10) | H7A—C7—H7B | 108.1 |
N1—C2—C3 | 121.59 (11) | N3—C8—C7i | 110.39 (9) |
N1—C2—H2 | 119.2 | N3—C8—H8A | 109.6 |
C3—C2—H2 | 119.2 | C7i—C8—H8A | 109.6 |
N2—C3—C2 | 121.18 (11) | N3—C8—H8B | 109.6 |
N2—C3—H3 | 119.4 | C7i—C8—H8B | 109.6 |
C2—C3—H3 | 119.4 | H8A—C8—H8B | 108.1 |
N2—C4—C1 | 120.67 (10) | H5B—O5—H5A | 109.8 (17) |
N2—C4—C6 | 110.85 (10) |
Symmetry code: (i) −x, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3B···O5ii | 0.92 (2) | 2.01 (2) | 2.800 (1) | 144 (1) |
N3—H3B···O4iii | 0.92 (2) | 2.46 (2) | 3.061 (1) | 124 (1) |
N3—H3A···O2 | 0.92 (2) | 1.97 (2) | 2.763 (1) | 143 (1) |
N3—H3A···N1 | 0.92 (2) | 2.34 (2) | 3.107 (2) | 141 (1) |
O5—H5B···O4iv | 0.85 (2) | 2.25 (2) | 2.923 (1) | 136 (2) |
O5—H5B···N2iv | 0.85 (2) | 2.34 (2) | 3.107 (1) | 151 (2) |
O5—H5A···O2v | 0.95 (2) | 1.90 (2) | 2.841 (1) | 172 (2) |
O3—H1O···O1 | 1.13 (2) | 1.29 (2) | 2.414 (1) | 174 (2) |
Symmetry codes: (ii) x, y, z+1; (iii) −x+1, y+1/2, −z+3/2; (iv) x, −y+1/2, z−1/2; (v) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C4H12N22+·2C6H3N2O4−·2H2O |
Mr | 458.40 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 120 |
a, b, c (Å) | 7.7519 (4), 18.4576 (8), 7.0292 (4) |
β (°) | 111.974 (6) |
V (Å3) | 932.68 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.40 × 0.40 × 0.30 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur with a Sapphire2 detector |
Absorption correction | Multi-scan (CrysAlis RED; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.990, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4000, 2006, 1696 |
Rint | 0.010 |
(sin θ/λ)max (Å−1) | 0.651 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.087, 1.02 |
No. of reflections | 2006 |
No. of parameters | 165 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.24, −0.38 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2009), CrysAlis RED (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Crystal Impact, 2009), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3B···O5i | 0.92 (2) | 2.01 (2) | 2.800 (1) | 144 (1) |
N3—H3B···O4ii | 0.92 (2) | 2.46 (2) | 3.061 (1) | 124 (1) |
N3—H3A···O2 | 0.92 (2) | 1.97 (2) | 2.763 (1) | 143 (1) |
N3—H3A···N1 | 0.92 (2) | 2.34 (2) | 3.107 (2) | 141 (1) |
O5—H5B···O4iii | 0.85 (2) | 2.25 (2) | 2.923 (1) | 136 (2) |
O5—H5B···N2iii | 0.85 (2) | 2.34 (2) | 3.107 (1) | 151 (2) |
O5—H5A···O2iv | 0.95 (2) | 1.90 (2) | 2.841 (1) | 172 (2) |
O3—H1O···O1 | 1.13 (2) | 1.29 (2) | 2.414 (1) | 174 (2) |
Symmetry codes: (i) x, y, z+1; (ii) −x+1, y+1/2, −z+3/2; (iii) x, −y+1/2, z−1/2; (iv) −x+1, −y+1, −z+1. |
Acknowledgements
Financial support as well as the provision of X-ray facilities by Ferdowsi University of Mashhad and Masaryk University are gratefully acknowledged by the authors.
References
Crystal Impact (2009). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Eshtiagh-Hosseini, H., Aghabozorg, H. & Mirzaei, M. (2010c). Acta Cryst. E66, m882. Web of Science CSD CrossRef IUCr Journals Google Scholar
Eshtiagh-Hosseini, H., Gschwind, F., Alfi, N. & Mirzaei, M. (2010b). Acta Cryst. E66, m826–m827. Web of Science CSD CrossRef IUCr Journals Google Scholar
Eshtiagh-Hosseini, H., Hassanpoor, A., Alfi, N., Mirzaei, M., Fromm, K. M., Shokrollahi, A., Gschwind, F. & Karami, E. (2010d). J. Coord. Chem. 63, 3175–3186. Web of Science CSD CrossRef CAS Google Scholar
Eshtiagh-Hosseini, H., Hassanpoor, A., Canadillas-Delgado, L. & Mirzaei, M. (2010a). Acta Cryst. E66, o1368–o1369. Web of Science CSD CrossRef IUCr Journals Google Scholar
Greenberg, B. L., Gilman, R. H., Shapiro, H., Gilman, J. B., Mondal, G., Maksud, M., Khatoon, H. & Chowdhury, J. (1981). Am. J. Clin. Nutr. 34, 2508–2516. CAS PubMed Web of Science Google Scholar
Iqbal, Z., Nadeem, Q. K., Khan, M. N., Akhtar, M. S. & Waraich, F. N. (2001). Int. J. Agric. Biol. 3, 454–457. Google Scholar
Oxford Diffraction (2009). CrysAlis CCD and CrysAlis RED. Oxford Diffraction Ltd, Yarnton, England. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
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1,4-Dac derivatives are a broad class of chemical compounds, many with important pharmacological properties. 1,4-Dac was first introduced as an anthelmimic in 1953 to treat of common roundworms (ascariasis) and pinworms (enterobiasis; oxyuriasis) (Iqbal et al., 2001; Greenberg et al., 1981). The title structure reported herein contains one half of the dicationic fragment (1,4-dacH2)2+, a monoanionic fragment (pyzdcH)- (pyzdcH2 = pyrazine-2,3-dicarboxylic acid) and one solvent water molecule per asymmetric unit (Fig. 1). The center of the 1,4-diazonia-cyclohexane dication represents a crystallographic center of inversion. The crystal structure shows that just one of the protons of pyrazine-2,3-di-carboxylic acid has been transferred to nitrogen atom of the (1,4-dacH2)2+ ring. Hydrogen bond motifs involving anionic and cationic fragments and solvent water molecules result in the formation a one dimensional chain (Fig. 2). As is obvious from the packing diagram additional π···π interactions are present in the crystal structure between adjacent pyrazine rings with centroid-centroid distances of 3.774 Å (Fig. 3).