organic compounds
Yuzurimine from of Daphniphyllum macropodum Miq.
aCollege of Science, Sichuan University, People's Republic of China, and bLeshan Teachers College, People's Republic of China
*Correspondence e-mail: xingjinhe@yahoo.com.cn
The title compound, C27H37NO7, is a Daphniphyllum alkaloid isolated from a branch of Daphniphyllum macropodum Miq. All of the five-membered rings adopt envelope conformations while the six- and seven-membered ring adopt chair conformations. Classical intermolecular O—H⋯O and weak C—H⋯N hydrogen bonds are present in the crystal structure.
Related literature
For the chemical structure of the title compound established from NMR and MS data, see: Li et al. (2009). For structures of Daphniphyllum see: Yamamura & Terada (1976); Kubota et al. (2006).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: CrysAlis PRO CCD (Oxford Diffraction, 2009); cell CrysAlis PRO CCD; data reduction: CrysAlis PRO RED (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536810041188/xu5044sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810041188/xu5044Isup2.hkl
The title compound was isolated from the branch of Daphniphyllum macropodum Miq. And crystals suitable for X-ray structure analysis was obtained by slow evaporation from an acetone solution at room temperature.
H atoms were located geometrically with C—H distance of 0.93–0.98 Å, and refined using a riding model with Uiso(H) = 1.2 Ueq(C). As no significant anomalous scatterings, Friedel pairs were merged.
The title compound, yuzurimine, was previously isolated from Daphniphyllum macropodum Miq. (Li et al. 2009), and its structure was established from the NMR and MS data. In our recent investigation, it was isolation from the branch of Daphniphyllum macropodum Miq. collected in the Emei Mountain, Sichuan Province of China in 2008. Its
is reported here.The molecular structure of the title compound is shown in Fig. 1. Six-membered ring A (C1/C2/C3/C4/C5/C8) adopts chair conformation; Six-membered heterocyclic ring B (C1/N1/C7/C6/C5/C8) displays the same chair conformation; seven-membered ring C (C5/C6/C12/C11/C10/C9/C8) adopts a screw-chair conformation; five-membered rings D (C8/C9/C13/C14/C15) and E (C10/C9/C15/C16/C17) adopt an envelope conformations. While the five-membered heterocyclic F (C1/N1/C19/C18/C2) displays an envelope conformation.
For the chemical structure of the title compound established from NMR and MS data, see: Li et al. (2009). For structures of Daphniphyllum
see: Yamamura & Terada (1976); Kubota et al. (2006).Data collection: CrysAlis PRO CCD (Oxford Diffraction, 2009); cell
CrysAlis PRO CCD (Oxford Diffraction, 2009); data reduction: CrysAlis PRO RED (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound with 30% probabiliy displacement ellipsoids for no-H atoms. H atoms have been omitted clarity. Dashed line indicates hydrogen bonding. |
C27H37NO7 | F(000) = 1048 |
Mr = 487.58 | Dx = 1.327 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 4404 reflections |
a = 9.5980 (3) Å | θ = 3.0–27.0° |
b = 9.7437 (2) Å | µ = 0.10 mm−1 |
c = 26.0986 (6) Å | T = 294 K |
V = 2440.74 (11) Å3 | Block, colorless |
Z = 4 | 0.60 × 0.45 × 0.20 mm |
Oxford Xcalibur diffractometer with an Eos CCD detector | 2236 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.019 |
Graphite monochromator | θmax = 26.4°, θmin = 3.1° |
ω scans | h = −4→11 |
8335 measured reflections | k = −12→6 |
2836 independent reflections | l = −32→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.120 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0793P)2] where P = (Fo2 + 2Fc2)/3 |
2836 reflections | (Δ/σ)max = 0.001 |
317 parameters | Δρmax = 0.48 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C27H37NO7 | V = 2440.74 (11) Å3 |
Mr = 487.58 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 9.5980 (3) Å | µ = 0.10 mm−1 |
b = 9.7437 (2) Å | T = 294 K |
c = 26.0986 (6) Å | 0.60 × 0.45 × 0.20 mm |
Oxford Xcalibur diffractometer with an Eos CCD detector | 2236 reflections with I > 2σ(I) |
8335 measured reflections | Rint = 0.019 |
2836 independent reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.120 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.48 e Å−3 |
2836 reflections | Δρmin = −0.19 e Å−3 |
317 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.6702 (2) | 0.3147 (2) | 0.46602 (7) | 0.0382 (5) | |
H1 | 0.7380 | 0.3170 | 0.4469 | 0.057* | |
O2 | 0.1503 (2) | 0.46110 (19) | 0.39329 (7) | 0.0362 (5) | |
O3 | −0.0227 (3) | 0.3209 (3) | 0.41677 (10) | 0.0737 (8) | |
O4 | 0.1867 (2) | 0.2863 (2) | 0.31031 (7) | 0.0404 (5) | |
O5 | 0.1503 (4) | 0.0913 (3) | 0.26965 (11) | 0.0921 (11) | |
O6 | 0.3018 (3) | −0.1150 (3) | 0.40070 (9) | 0.0687 (7) | |
O7 | 0.4426 (3) | −0.0900 (3) | 0.33499 (9) | 0.0768 (9) | |
N1 | 0.6017 (2) | 0.4877 (2) | 0.41036 (8) | 0.0332 (5) | |
C1 | 0.5508 (3) | 0.3699 (3) | 0.43982 (9) | 0.0295 (6) | |
C2 | 0.4577 (3) | 0.4292 (3) | 0.48146 (9) | 0.0342 (6) | |
H2 | 0.4451 | 0.3630 | 0.5094 | 0.041* | |
C3 | 0.3173 (3) | 0.4728 (3) | 0.45943 (10) | 0.0380 (7) | |
H3B | 0.2505 | 0.4779 | 0.4873 | 0.046* | |
H3A | 0.3269 | 0.5645 | 0.4453 | 0.046* | |
C4 | 0.2579 (3) | 0.3794 (3) | 0.41792 (9) | 0.0314 (6) | |
H4 | 0.2134 | 0.3006 | 0.4346 | 0.038* | |
C5 | 0.3605 (3) | 0.3247 (2) | 0.37656 (9) | 0.0273 (5) | |
C6 | 0.4181 (3) | 0.4432 (3) | 0.34171 (10) | 0.0327 (6) | |
H6 | 0.3356 | 0.4956 | 0.3313 | 0.039* | |
C12 | 0.4869 (3) | 0.3971 (3) | 0.29090 (9) | 0.0395 (7) | |
H12B | 0.4272 | 0.3283 | 0.2754 | 0.047* | |
H12A | 0.4882 | 0.4755 | 0.2680 | 0.047* | |
C11 | 0.6344 (3) | 0.3386 (4) | 0.29319 (10) | 0.0462 (8) | |
H11B | 0.6622 | 0.3129 | 0.2588 | 0.055* | |
H11A | 0.6969 | 0.4107 | 0.3045 | 0.055* | |
C10 | 0.6540 (3) | 0.2175 (3) | 0.32725 (10) | 0.0381 (7) | |
C17 | 0.7564 (4) | 0.1055 (4) | 0.31502 (12) | 0.0595 (10) | |
H17A | 0.8510 | 0.1392 | 0.3185 | 0.071* | |
H17B | 0.7433 | 0.0737 | 0.2801 | 0.071* | |
C16 | 0.7302 (4) | −0.0094 (4) | 0.35225 (12) | 0.0604 (10) | |
H16A | 0.8171 | −0.0456 | 0.3655 | 0.073* | |
H16B | 0.6784 | −0.0832 | 0.3361 | 0.073* | |
C15 | 0.6441 (3) | 0.0580 (3) | 0.39524 (11) | 0.0411 (7) | |
H15 | 0.7077 | 0.0796 | 0.4235 | 0.049* | |
C14 | 0.5100 (3) | −0.0001 (3) | 0.41841 (11) | 0.0389 (7) | |
H14 | 0.5328 | −0.0641 | 0.4461 | 0.047* | |
C13 | 0.4398 (3) | 0.1315 (3) | 0.44104 (9) | 0.0336 (6) | |
H13A | 0.4709 | 0.1465 | 0.4760 | 0.040* | |
H13B | 0.3393 | 0.1213 | 0.4412 | 0.040* | |
C8 | 0.4837 (3) | 0.2571 (2) | 0.40589 (9) | 0.0268 (6) | |
C9 | 0.5948 (3) | 0.1916 (3) | 0.37249 (10) | 0.0316 (6) | |
C19 | 0.6329 (4) | 0.5914 (3) | 0.45071 (11) | 0.0467 (8) | |
H19B | 0.6076 | 0.6824 | 0.4388 | 0.056* | |
H19A | 0.7316 | 0.5910 | 0.4586 | 0.056* | |
C18 | 0.5466 (3) | 0.5536 (3) | 0.49960 (11) | 0.0438 (7) | |
H18 | 0.6119 | 0.5204 | 0.5256 | 0.053* | |
C7 | 0.5085 (3) | 0.5450 (3) | 0.37085 (11) | 0.0406 (7) | |
H7B | 0.5651 | 0.5943 | 0.3462 | 0.049* | |
H7A | 0.4477 | 0.6114 | 0.3872 | 0.049* | |
C20 | 0.4694 (5) | 0.6767 (4) | 0.52205 (14) | 0.0678 (11) | |
H20A | 0.4126 | 0.6471 | 0.5502 | 0.102* | |
H20C | 0.4114 | 0.7171 | 0.4962 | 0.102* | |
H20B | 0.5357 | 0.7434 | 0.5339 | 0.102* | |
C21 | 0.0177 (3) | 0.4231 (3) | 0.39505 (10) | 0.0393 (7) | |
C22 | −0.0720 (3) | 0.5211 (4) | 0.36612 (12) | 0.0503 (8) | |
H22B | −0.1680 | 0.5048 | 0.3744 | 0.076* | |
H22C | −0.0581 | 0.5082 | 0.3300 | 0.076* | |
H22A | −0.0476 | 0.6134 | 0.3753 | 0.076* | |
C23 | 0.2849 (3) | 0.2182 (3) | 0.34440 (10) | 0.0339 (6) | |
H23B | 0.3518 | 0.1661 | 0.3244 | 0.041* | |
H23A | 0.2354 | 0.1549 | 0.3666 | 0.041* | |
C24 | 0.1298 (3) | 0.2110 (3) | 0.27347 (10) | 0.0407 (7) | |
C25 | 0.0380 (4) | 0.2931 (4) | 0.24032 (11) | 0.0509 (8) | |
H25C | −0.0115 | 0.2334 | 0.2174 | 0.076* | |
H25B | 0.0930 | 0.3567 | 0.2208 | 0.076* | |
H25A | −0.0273 | 0.3427 | 0.2611 | 0.076* | |
C26 | 0.4157 (4) | −0.0727 (3) | 0.37809 (12) | 0.0462 (8) | |
C27 | 0.2020 (5) | −0.1746 (4) | 0.36432 (14) | 0.0790 (12) | |
H27B | 0.2100 | −0.2728 | 0.3648 | 0.118* | |
H27C | 0.2217 | −0.1413 | 0.3305 | 0.118* | |
H27A | 0.1091 | −0.1487 | 0.3739 | 0.118* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0288 (10) | 0.0501 (11) | 0.0357 (9) | −0.0001 (11) | −0.0087 (8) | 0.0011 (9) |
O2 | 0.0214 (9) | 0.0407 (10) | 0.0465 (11) | 0.0010 (9) | −0.0012 (8) | 0.0061 (9) |
O3 | 0.0356 (13) | 0.0947 (19) | 0.0909 (18) | −0.0145 (15) | −0.0098 (13) | 0.0483 (17) |
O4 | 0.0387 (11) | 0.0407 (10) | 0.0417 (10) | 0.0026 (11) | −0.0183 (9) | −0.0028 (9) |
O5 | 0.124 (3) | 0.0572 (15) | 0.0951 (19) | 0.020 (2) | −0.068 (2) | −0.0273 (15) |
O6 | 0.0680 (17) | 0.0769 (17) | 0.0612 (13) | −0.0202 (16) | 0.0013 (13) | −0.0102 (13) |
O7 | 0.087 (2) | 0.097 (2) | 0.0469 (13) | −0.0159 (19) | 0.0028 (14) | −0.0190 (14) |
N1 | 0.0290 (12) | 0.0368 (12) | 0.0337 (11) | −0.0056 (11) | −0.0028 (10) | −0.0008 (10) |
C1 | 0.0264 (14) | 0.0326 (13) | 0.0295 (12) | −0.0026 (12) | −0.0045 (10) | 0.0003 (11) |
C2 | 0.0357 (15) | 0.0407 (15) | 0.0263 (12) | −0.0004 (15) | −0.0025 (11) | −0.0016 (11) |
C3 | 0.0315 (14) | 0.0489 (16) | 0.0337 (13) | 0.0044 (14) | 0.0017 (12) | −0.0054 (13) |
C4 | 0.0242 (13) | 0.0365 (14) | 0.0334 (13) | −0.0002 (12) | 0.0003 (11) | 0.0068 (12) |
C5 | 0.0250 (13) | 0.0295 (12) | 0.0273 (11) | −0.0013 (12) | −0.0020 (10) | 0.0023 (11) |
C6 | 0.0270 (14) | 0.0394 (14) | 0.0318 (13) | 0.0008 (14) | −0.0029 (11) | 0.0093 (12) |
C12 | 0.0400 (16) | 0.0497 (16) | 0.0288 (13) | −0.0013 (16) | −0.0002 (12) | 0.0097 (13) |
C11 | 0.0383 (17) | 0.067 (2) | 0.0333 (14) | 0.0026 (18) | 0.0104 (13) | 0.0074 (14) |
C10 | 0.0314 (15) | 0.0524 (16) | 0.0305 (12) | 0.0035 (16) | 0.0028 (12) | −0.0027 (13) |
C17 | 0.054 (2) | 0.078 (2) | 0.0459 (16) | 0.025 (2) | 0.0068 (16) | −0.0050 (17) |
C16 | 0.057 (2) | 0.064 (2) | 0.0599 (19) | 0.024 (2) | 0.0079 (18) | −0.0019 (18) |
C15 | 0.0401 (17) | 0.0439 (15) | 0.0392 (14) | 0.0125 (16) | −0.0056 (13) | 0.0039 (13) |
C14 | 0.0404 (17) | 0.0360 (14) | 0.0404 (15) | 0.0080 (15) | −0.0078 (13) | 0.0043 (13) |
C13 | 0.0374 (16) | 0.0346 (13) | 0.0287 (12) | −0.0016 (13) | −0.0036 (11) | 0.0043 (12) |
C8 | 0.0260 (13) | 0.0311 (12) | 0.0235 (12) | −0.0009 (12) | −0.0037 (10) | 0.0013 (10) |
C9 | 0.0275 (13) | 0.0361 (13) | 0.0313 (13) | 0.0042 (13) | −0.0051 (11) | −0.0010 (12) |
C19 | 0.0461 (19) | 0.0435 (15) | 0.0506 (16) | −0.0104 (16) | −0.0060 (15) | −0.0084 (14) |
C18 | 0.0455 (18) | 0.0479 (17) | 0.0381 (14) | −0.0005 (16) | −0.0063 (14) | −0.0115 (14) |
C7 | 0.0438 (17) | 0.0350 (14) | 0.0429 (15) | −0.0026 (15) | −0.0021 (14) | 0.0063 (13) |
C20 | 0.072 (3) | 0.062 (2) | 0.069 (2) | −0.002 (2) | 0.001 (2) | −0.0308 (19) |
C21 | 0.0271 (15) | 0.0557 (17) | 0.0352 (14) | −0.0062 (15) | 0.0004 (12) | 0.0056 (14) |
C22 | 0.0322 (16) | 0.066 (2) | 0.0526 (18) | 0.0039 (17) | −0.0034 (14) | 0.0042 (17) |
C23 | 0.0349 (15) | 0.0344 (13) | 0.0326 (12) | 0.0024 (14) | −0.0091 (12) | 0.0024 (12) |
C24 | 0.0372 (16) | 0.0472 (16) | 0.0377 (14) | −0.0017 (16) | −0.0084 (13) | −0.0042 (14) |
C25 | 0.052 (2) | 0.0589 (18) | 0.0421 (16) | −0.0022 (19) | −0.0180 (15) | 0.0047 (15) |
C26 | 0.060 (2) | 0.0328 (14) | 0.0455 (18) | 0.0046 (16) | 0.0151 (16) | 0.0020 (14) |
C27 | 0.073 (3) | 0.075 (3) | 0.089 (3) | −0.017 (2) | −0.021 (2) | −0.022 (2) |
O1—C1 | 1.439 (3) | C17—H17A | 0.9700 |
O1—H1 | 0.8200 | C17—H17B | 0.9700 |
O2—C21 | 1.327 (4) | C16—C15 | 1.540 (4) |
O2—C4 | 1.454 (3) | C16—H16A | 0.9700 |
O3—C21 | 1.209 (4) | C16—H16B | 0.9700 |
O4—C24 | 1.327 (3) | C15—C9 | 1.508 (4) |
O4—C23 | 1.456 (3) | C15—C14 | 1.531 (5) |
O5—C24 | 1.187 (4) | C15—H15 | 0.9800 |
O6—C26 | 1.309 (4) | C14—C26 | 1.558 (5) |
O6—C27 | 1.468 (4) | C14—C13 | 1.564 (4) |
O7—C26 | 1.166 (4) | C14—H14 | 0.9800 |
N1—C1 | 1.465 (4) | C13—C8 | 1.586 (4) |
N1—C7 | 1.475 (4) | C13—H13A | 0.9700 |
N1—C19 | 1.490 (4) | C13—H13B | 0.9700 |
C1—C2 | 1.521 (4) | C8—C9 | 1.518 (4) |
C1—C8 | 1.552 (4) | C19—C18 | 1.565 (4) |
C2—C3 | 1.526 (4) | C19—H19B | 0.9700 |
C2—C18 | 1.556 (4) | C19—H19A | 0.9700 |
C2—H2 | 0.9800 | C18—C20 | 1.527 (4) |
C3—C4 | 1.526 (4) | C18—H18 | 0.9800 |
C3—H3B | 0.9700 | C7—H7B | 0.9700 |
C3—H3A | 0.9700 | C7—H7A | 0.9700 |
C4—C5 | 1.555 (4) | C20—H20A | 0.9600 |
C4—H4 | 0.9800 | C20—H20C | 0.9600 |
C5—C23 | 1.520 (4) | C20—H20B | 0.9600 |
C5—C8 | 1.555 (3) | C21—C22 | 1.491 (4) |
C5—C6 | 1.570 (3) | C22—H22B | 0.9600 |
C6—C7 | 1.522 (4) | C22—H22C | 0.9600 |
C6—C12 | 1.548 (4) | C22—H22A | 0.9600 |
C6—H6 | 0.9800 | C23—H23B | 0.9700 |
C12—C11 | 1.528 (4) | C23—H23A | 0.9700 |
C12—H12B | 0.9700 | C24—C25 | 1.471 (4) |
C12—H12A | 0.9700 | C25—H25C | 0.9600 |
C11—C10 | 1.489 (4) | C25—H25B | 0.9600 |
C11—H11B | 0.9700 | C25—H25A | 0.9600 |
C11—H11A | 0.9700 | C27—H27B | 0.9600 |
C10—C9 | 1.335 (4) | C27—H27C | 0.9600 |
C10—C17 | 1.502 (4) | C27—H27A | 0.9600 |
C17—C16 | 1.504 (5) | ||
C1—O1—H1 | 109.5 | C15—C14—C13 | 102.0 (2) |
C21—O2—C4 | 120.9 (2) | C26—C14—C13 | 112.1 (2) |
C24—O4—C23 | 117.2 (2) | C15—C14—H14 | 109.8 |
C26—O6—C27 | 112.2 (3) | C26—C14—H14 | 109.8 |
C1—N1—C7 | 117.4 (2) | C13—C14—H14 | 109.8 |
C1—N1—C19 | 103.1 (2) | C14—C13—C8 | 107.5 (2) |
C7—N1—C19 | 111.0 (2) | C14—C13—H13A | 110.2 |
O1—C1—N1 | 106.1 (2) | C8—C13—H13A | 110.2 |
O1—C1—C2 | 105.67 (19) | C14—C13—H13B | 110.2 |
N1—C1—C2 | 105.9 (2) | C8—C13—H13B | 110.2 |
O1—C1—C8 | 109.7 (2) | H13A—C13—H13B | 108.5 |
N1—C1—C8 | 113.19 (19) | C9—C8—C1 | 109.5 (2) |
C2—C1—C8 | 115.6 (2) | C9—C8—C5 | 115.43 (18) |
C1—C2—C3 | 110.8 (2) | C1—C8—C5 | 107.3 (2) |
C1—C2—C18 | 101.0 (2) | C9—C8—C13 | 101.2 (2) |
C3—C2—C18 | 112.4 (2) | C1—C8—C13 | 109.08 (18) |
C1—C2—H2 | 110.7 | C5—C8—C13 | 114.2 (2) |
C3—C2—H2 | 110.7 | C10—C9—C15 | 112.2 (3) |
C18—C2—H2 | 110.7 | C10—C9—C8 | 136.7 (3) |
C4—C3—C2 | 115.5 (2) | C15—C9—C8 | 111.0 (2) |
C4—C3—H3B | 108.4 | N1—C19—C18 | 108.1 (2) |
C2—C3—H3B | 108.4 | N1—C19—H19B | 110.1 |
C4—C3—H3A | 108.4 | C18—C19—H19B | 110.1 |
C2—C3—H3A | 108.4 | N1—C19—H19A | 110.1 |
H3B—C3—H3A | 107.5 | C18—C19—H19A | 110.1 |
O2—C4—C3 | 104.6 (2) | H19B—C19—H19A | 108.4 |
O2—C4—C5 | 109.29 (19) | C20—C18—C2 | 117.6 (3) |
C3—C4—C5 | 117.4 (2) | C20—C18—C19 | 112.6 (3) |
O2—C4—H4 | 108.4 | C2—C18—C19 | 103.0 (2) |
C3—C4—H4 | 108.4 | C20—C18—H18 | 107.7 |
C5—C4—H4 | 108.4 | C2—C18—H18 | 107.7 |
C23—C5—C8 | 110.21 (19) | C19—C18—H18 | 107.7 |
C23—C5—C4 | 108.4 (2) | N1—C7—C6 | 116.7 (2) |
C8—C5—C4 | 106.53 (18) | N1—C7—H7B | 108.1 |
C23—C5—C6 | 110.51 (19) | C6—C7—H7B | 108.1 |
C8—C5—C6 | 109.2 (2) | N1—C7—H7A | 108.1 |
C4—C5—C6 | 111.9 (2) | C6—C7—H7A | 108.1 |
C7—C6—C12 | 112.0 (2) | H7B—C7—H7A | 107.3 |
C7—C6—C5 | 113.0 (2) | C18—C20—H20A | 109.5 |
C12—C6—C5 | 115.7 (2) | C18—C20—H20C | 109.5 |
C7—C6—H6 | 105.0 | H20A—C20—H20C | 109.5 |
C12—C6—H6 | 105.0 | C18—C20—H20B | 109.5 |
C5—C6—H6 | 105.0 | H20A—C20—H20B | 109.5 |
C11—C12—C6 | 118.0 (2) | H20C—C20—H20B | 109.5 |
C11—C12—H12B | 107.8 | O3—C21—O2 | 123.6 (3) |
C6—C12—H12B | 107.8 | O3—C21—C22 | 125.4 (3) |
C11—C12—H12A | 107.8 | O2—C21—C22 | 110.9 (3) |
C6—C12—H12A | 107.8 | C21—C22—H22B | 109.5 |
H12B—C12—H12A | 107.1 | C21—C22—H22C | 109.5 |
C10—C11—C12 | 115.8 (2) | H22B—C22—H22C | 109.5 |
C10—C11—H11B | 108.3 | C21—C22—H22A | 109.5 |
C12—C11—H11B | 108.3 | H22B—C22—H22A | 109.5 |
C10—C11—H11A | 108.3 | H22C—C22—H22A | 109.5 |
C12—C11—H11A | 108.3 | O4—C23—C5 | 109.6 (2) |
H11B—C11—H11A | 107.4 | O4—C23—H23B | 109.8 |
C9—C10—C11 | 128.6 (3) | C5—C23—H23B | 109.8 |
C9—C10—C17 | 109.2 (3) | O4—C23—H23A | 109.8 |
C11—C10—C17 | 122.1 (3) | C5—C23—H23A | 109.8 |
C10—C17—C16 | 107.1 (3) | H23B—C23—H23A | 108.2 |
C10—C17—H17A | 110.3 | O5—C24—O4 | 122.4 (3) |
C16—C17—H17A | 110.3 | O5—C24—C25 | 125.8 (3) |
C10—C17—H17B | 110.3 | O4—C24—C25 | 111.8 (3) |
C16—C17—H17B | 110.3 | C24—C25—H25C | 109.5 |
H17A—C17—H17B | 108.5 | C24—C25—H25B | 109.5 |
C17—C16—C15 | 104.1 (3) | H25C—C25—H25B | 109.5 |
C17—C16—H16A | 110.9 | C24—C25—H25A | 109.5 |
C15—C16—H16A | 110.9 | H25C—C25—H25A | 109.5 |
C17—C16—H16B | 110.9 | H25B—C25—H25A | 109.5 |
C15—C16—H16B | 110.9 | O7—C26—O6 | 125.0 (4) |
H16A—C16—H16B | 109.0 | O7—C26—C14 | 126.0 (3) |
C9—C15—C14 | 102.1 (2) | O6—C26—C14 | 108.9 (2) |
C9—C15—C16 | 104.5 (2) | O6—C27—H27B | 109.5 |
C14—C15—C16 | 125.6 (3) | O6—C27—H27C | 109.5 |
C9—C15—H15 | 107.8 | H27B—C27—H27C | 109.5 |
C14—C15—H15 | 107.8 | O6—C27—H27A | 109.5 |
C16—C15—H15 | 107.8 | H27B—C27—H27A | 109.5 |
C15—C14—C26 | 112.9 (2) | H27C—C27—H27A | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O3i | 0.82 | 2.43 | 3.216 (3) | 161 |
C22—H22B···N1ii | 0.96 | 2.41 | 3.354 (4) | 169 |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C27H37NO7 |
Mr | 487.58 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 294 |
a, b, c (Å) | 9.5980 (3), 9.7437 (2), 26.0986 (6) |
V (Å3) | 2440.74 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.60 × 0.45 × 0.20 |
Data collection | |
Diffractometer | Oxford Xcalibur diffractometer with an Eos CCD detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8335, 2836, 2236 |
Rint | 0.019 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.120, 1.04 |
No. of reflections | 2836 |
No. of parameters | 317 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.48, −0.19 |
Computer programs: CrysAlis PRO CCD (Oxford Diffraction, 2009), CrysAlis PRO RED (Oxford Diffraction, 2009), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O3i | 0.82 | 2.43 | 3.216 (3) | 161 |
C22—H22B···N1ii | 0.96 | 2.41 | 3.354 (4) | 169 |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z. |
Acknowledgements
This project was supported by grants from the PhD Programs Foundation of the Ministry of Education of China (grant No. 20090181110064) and the Scientific Reseach Fund of Leshan Teachers' College, China (grant No. Z0975). We thank Professor F.-Z. Chen of Leshan Teachers College for the isolation of the title compound.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound, yuzurimine, was previously isolated from Daphniphyllum macropodum Miq. (Li et al. 2009), and its structure was established from the NMR and MS data. In our recent investigation, it was isolation from the branch of Daphniphyllum macropodum Miq. collected in the Emei Mountain, Sichuan Province of China in 2008. Its crystal structure is reported here.
The molecular structure of the title compound is shown in Fig. 1. Six-membered ring A (C1/C2/C3/C4/C5/C8) adopts chair conformation; Six-membered heterocyclic ring B (C1/N1/C7/C6/C5/C8) displays the same chair conformation; seven-membered ring C (C5/C6/C12/C11/C10/C9/C8) adopts a screw-chair conformation; five-membered rings D (C8/C9/C13/C14/C15) and E (C10/C9/C15/C16/C17) adopt an envelope conformations. While the five-membered heterocyclic F (C1/N1/C19/C18/C2) displays an envelope conformation.