metal-organic compounds
Aqua(4-nitrophthalato)bis[2-(1H-pyrazol-3-yl)pyridine]zinc(II) hemihydrate
aCollege of Chemistry and Biology, Beihua University, Jilin 132013, People's Republic of China
*Correspondence e-mail: nilei_bh@163.com
In the title compound, [Zn(C8H3NO6)(C8H7N3)2(H2O)]·0.5H2O, the ZnII atom shows a distorted octahedral ZnN4O2 coordination environment and is bonded to two 3-(2-pyridyl)-1H-pyrazole ligands via the N atoms, one monodentate 4-nitrophthalate ligand and one associated water molecule. Additionally, one water of crystallization, with a site-occupation factor of 0.5, is present. The two 3-(2-pyridyl)-1H-pyrazole ligands are planar [r.m.s. deviations = 0.03 (1) and 0.35 (1) Å] and the dihedral angle between the two planar 3-(2-pyridyl)-1H-pyrazole ligands is 67.31 (4)°. Intermolecular π–π stacking interactions between 3-(2-pyridyl)-1H-pyrazole ligands with a face-to-face separation of 3.64 (1) Å are observed. Moreover, the is stabilized by O—H⋯O and N—H⋯O hydrogen bonds between the water of crystallization, the associated water molecule and the 3-(2-pyridyl)-1H-pyrazole ligands.
Related literature
For background to metal-organic frameworks, see: Hagrman et al. (1999); Kitagawa et al. (2004).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536810051949/im2226sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810051949/im2226Isup2.hkl
A mixture of zinc oxalate dihydrate (0.26 mmol, 0.050 g), 3-(2-pyridyl)-1H-pyrazole (0.32 mmoL, 0.05 g), 4-nitrophthalic acid (0.24 mmoL, 0.05 g), gadolinium(III) nitrate pentahydrate (0.12 mmoL, 0.05 g), and 14 ml H2O was sealed in a 25 ml Teflon-lined stainless steel autoclave at 433 K for three days. Pink crystals suitable for the X-ray experiment were obtained. The yield is 60% based on the zinc salt. Anal. Calc. for C48H40N14O15Zn2: C 48.65, H 3.38, N 16.55%; Found: C 48.32, H 3.15, N 16.39%.
All hydrogen atoms bound to carbon were refined using a riding model with distance C—H = 0.93 Å, Uiso = 1.2Ueq (C) for aromatic atoms. The H atoms of the coordinated water molecule were located from difference density maps and were refined with d(O—H) = 0.83 (2) Å, and with a fixed Uiso of 0.80 Å2. H atoms at the solvent water molecule could not be derived from the Fourier map. Due to the site occupation factor of 0.5 for O1W these positions wer excluded from the final refinement.
The synthesis of entangled metal-organic frameworks (MOFs) has attracted continuous research interest not only because of their appealing structural and topological novelty, but also due to their unusual optical, electronic, magnetic, and catalytic properties, as well as their potential medical application (Hagrman et al. (1999); Kitagawa et al. (2004)). Here, we describe the synthesis and structural characterization of the title compound resulting from an attempted MOF synthesis in which Zn and Gd complex building blocks were expected to be the constituents.
Single crystal X-ray diffraction analyses revealed that the π-π stacking interactions with the face-to-face separation (ca 3.64 (1) Å) between the 3-(2-pyridyl)-1H-pyrazole planars. Meantime, there are extensive hydrogen bonds between water of crystallization, associated water molecule, and 3-(2-pyridyl)-1H-pyrazole, and leads to a consolidation of the structure (Figure 2).
of the title compound, [(Zn(C8H7N3)2(C8NH3O6)(H2O)].(H2O)0.5, consists of one Zn2+ ion, two 3-(2-pyridyl)-1H-pyrazole ligands, one 4-Nitrophthalato ligand, one associated water molecule, and half water of crystallization. As shown in Figure 1, the Zn2+ ion is hexacoordinated by four N atoms from 3-(2-pyridyl)-1H-pyrazole ligands and two oxygen atoms from 4-Nitrophthalato ligand and one associated water molecule, exhibiting a distorted octahedral arrangement of ZnN4O2. Moreover, the Rms deviations of the two 3-(2-pyridyl)-1H-pyrazole groups from planarity are 0.03 (1) and 0.35 (1) Å, respectively. The dihedral angle between the two 3-(2-pyridyl)-1H-pyrazole planars is 67.31 (4) Å. Interestingly, between the molecules, there isFor background to metal-organic frameworks, see: Hagrman et al. (1999); Kitagawa et al. (2004).
Data collection: APEX2 (Bruker, 2004); cell
SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Zn(C8H3NO6)(C8H7N3)2(H2O)]·0.5H2O | Z = 2 |
Mr = 591.84 | F(000) = 604 |
Triclinic, P1 | Dx = 1.552 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.4284 (6) Å | Cell parameters from 4528 reflections |
b = 11.1844 (7) Å | θ = 2.4–27.3° |
c = 11.9656 (8) Å | µ = 1.03 mm−1 |
α = 96.508 (3)° | T = 294 K |
β = 112.091 (3)° | Block, colorless |
γ = 96.366 (3)° | 0.12 × 0.10 × 0.08 mm |
V = 1266.84 (14) Å3 |
Bruker APEXII CCD diffractometer | 4258 independent reflections |
Radiation source: fine-focus sealed tube | 3825 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.020 |
phi and ω scans | θmax = 25.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −12→12 |
Tmin = 0.886, Tmax = 0.922 | k = −13→13 |
9062 measured reflections | l = −14→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.104 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.066P)2 + 0.7068P] where P = (Fo2 + 2Fc2)/3 |
4258 reflections | (Δ/σ)max = 0.001 |
364 parameters | Δρmax = 0.65 e Å−3 |
3 restraints | Δρmin = −0.42 e Å−3 |
[Zn(C8H3NO6)(C8H7N3)2(H2O)]·0.5H2O | γ = 96.366 (3)° |
Mr = 591.84 | V = 1266.84 (14) Å3 |
Triclinic, P1 | Z = 2 |
a = 10.4284 (6) Å | Mo Kα radiation |
b = 11.1844 (7) Å | µ = 1.03 mm−1 |
c = 11.9656 (8) Å | T = 294 K |
α = 96.508 (3)° | 0.12 × 0.10 × 0.08 mm |
β = 112.091 (3)° |
Bruker APEXII CCD diffractometer | 4258 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 3825 reflections with I > 2σ(I) |
Tmin = 0.886, Tmax = 0.922 | Rint = 0.020 |
9062 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 3 restraints |
wR(F2) = 0.104 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.65 e Å−3 |
4258 reflections | Δρmin = −0.42 e Å−3 |
364 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.7155 (4) | 0.7772 (3) | 0.9195 (3) | 0.0652 (9) | |
H1 | 0.6311 | 0.7613 | 0.9291 | 0.078* | |
C2 | 0.8440 (4) | 0.8158 (3) | 1.0110 (3) | 0.0618 (9) | |
H2 | 0.8654 | 0.8318 | 1.0946 | 0.074* | |
C3 | 0.9371 (3) | 0.8262 (2) | 0.9526 (3) | 0.0471 (7) | |
C4 | 1.0889 (3) | 0.8628 (2) | 0.9968 (3) | 0.0476 (7) | |
C5 | 1.1747 (4) | 0.9022 (3) | 1.1197 (3) | 0.0610 (8) | |
H5 | 1.1367 | 0.9060 | 1.1788 | 0.073* | |
C6 | 1.3160 (4) | 0.9354 (3) | 1.1522 (3) | 0.0719 (10) | |
H6 | 1.3755 | 0.9618 | 1.2339 | 0.086* | |
C7 | 1.3695 (4) | 0.9292 (3) | 1.0618 (3) | 0.0708 (10) | |
H7 | 1.4651 | 0.9517 | 1.0817 | 0.085* | |
C8 | 1.2775 (4) | 0.8889 (3) | 0.9417 (3) | 0.0589 (8) | |
H8 | 1.3136 | 0.8841 | 0.8814 | 0.071* | |
C9 | 1.2913 (3) | 0.7454 (3) | 0.5661 (3) | 0.0594 (8) | |
H9 | 1.3580 | 0.7702 | 0.5356 | 0.071* | |
C10 | 1.2595 (3) | 0.6312 (3) | 0.5882 (3) | 0.0576 (8) | |
H10 | 1.2987 | 0.5629 | 0.5755 | 0.069* | |
C11 | 1.1556 (3) | 0.6392 (2) | 0.6339 (2) | 0.0381 (5) | |
C12 | 1.0801 (3) | 0.5491 (2) | 0.6763 (2) | 0.0369 (5) | |
C13 | 1.0886 (3) | 0.4254 (2) | 0.6620 (3) | 0.0493 (7) | |
H13 | 1.1427 | 0.3953 | 0.6223 | 0.059* | |
C14 | 1.0159 (4) | 0.3486 (3) | 0.7075 (3) | 0.0621 (9) | |
H14 | 1.0200 | 0.2656 | 0.6988 | 0.075* | |
C15 | 0.9378 (4) | 0.3948 (3) | 0.7654 (4) | 0.0680 (9) | |
H15 | 0.8888 | 0.3442 | 0.7977 | 0.082* | |
C16 | 0.9322 (4) | 0.5181 (3) | 0.7755 (3) | 0.0606 (8) | |
H16 | 0.8783 | 0.5491 | 0.8150 | 0.073* | |
C17 | 0.6685 (3) | 0.7186 (3) | 0.5137 (3) | 0.0499 (7) | |
C18 | 0.5894 (3) | 0.6933 (2) | 0.3769 (2) | 0.0403 (6) | |
C19 | 0.4792 (3) | 0.5955 (3) | 0.3277 (3) | 0.0539 (7) | |
H19 | 0.4518 | 0.5534 | 0.3799 | 0.065* | |
C20 | 0.4097 (3) | 0.5596 (3) | 0.2034 (3) | 0.0586 (8) | |
H20 | 0.3366 | 0.4936 | 0.1711 | 0.070* | |
C21 | 0.4512 (3) | 0.6235 (3) | 0.1282 (3) | 0.0496 (7) | |
C22 | 0.5606 (3) | 0.7203 (2) | 0.1733 (2) | 0.0431 (6) | |
H22 | 0.5887 | 0.7600 | 0.1200 | 0.052* | |
C23 | 0.6285 (2) | 0.7579 (2) | 0.2984 (2) | 0.0371 (5) | |
C24 | 0.7389 (3) | 0.8724 (2) | 0.3428 (3) | 0.0442 (6) | |
Zn1 | 0.97417 (3) | 0.78410 (2) | 0.71551 (3) | 0.03624 (12) | |
N1 | 0.3763 (3) | 0.5867 (3) | −0.0053 (3) | 0.0720 (8) | |
N2 | 0.7314 (3) | 0.7660 (2) | 0.8127 (2) | 0.0519 (6) | |
H2A | 0.6641 | 0.7428 | 0.7420 | 0.062* | |
N3 | 0.8669 (3) | 0.7961 (2) | 0.8318 (2) | 0.0452 (5) | |
N4 | 1.1400 (3) | 0.8564 (2) | 0.9082 (2) | 0.0477 (6) | |
N5 | 1.2091 (2) | 0.8153 (2) | 0.5964 (2) | 0.0442 (5) | |
H5A | 1.2100 | 0.8911 | 0.5895 | 0.053* | |
N6 | 1.1256 (2) | 0.75232 (18) | 0.63868 (19) | 0.0374 (5) | |
N7 | 1.0006 (2) | 0.59453 (19) | 0.7312 (2) | 0.0423 (5) | |
O1 | 0.95913 (19) | 0.95872 (16) | 0.67148 (17) | 0.0420 (4) | |
O2 | 0.5984 (3) | 0.7250 (6) | 0.5755 (3) | 0.165 (2) | |
O3 | 0.79649 (18) | 0.72281 (17) | 0.55259 (17) | 0.0433 (4) | |
O4 | 0.7478 (3) | 0.94256 (18) | 0.43546 (19) | 0.0594 (6) | |
O5 | 0.8072 (3) | 0.8910 (2) | 0.2798 (3) | 0.0751 (7) | |
O6 | 0.4156 (3) | 0.6389 (3) | −0.0729 (2) | 0.0957 (10) | |
O7 | 0.2773 (4) | 0.5050 (4) | −0.0427 (3) | 0.1448 (18) | |
O1W | 0.5000 | 0.0000 | 0.5000 | 0.198 (4) | |
H1W | 0.901 (2) | 0.943 (3) | 0.6007 (10) | 0.080* | |
H2W | 1.031 (2) | 1.004 (3) | 0.681 (3) | 0.080* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.086 (3) | 0.066 (2) | 0.074 (2) | 0.0190 (18) | 0.061 (2) | 0.0210 (17) |
C2 | 0.092 (3) | 0.0636 (19) | 0.0523 (18) | 0.0227 (18) | 0.0484 (19) | 0.0194 (15) |
C3 | 0.0754 (19) | 0.0368 (13) | 0.0434 (15) | 0.0165 (13) | 0.0361 (14) | 0.0114 (11) |
C4 | 0.0715 (19) | 0.0345 (13) | 0.0434 (15) | 0.0159 (13) | 0.0270 (14) | 0.0103 (11) |
C5 | 0.091 (3) | 0.0509 (17) | 0.0440 (16) | 0.0205 (17) | 0.0269 (17) | 0.0116 (13) |
C6 | 0.088 (3) | 0.062 (2) | 0.0500 (19) | 0.0151 (18) | 0.0103 (18) | 0.0082 (15) |
C7 | 0.066 (2) | 0.065 (2) | 0.069 (2) | 0.0092 (17) | 0.0149 (18) | 0.0103 (17) |
C8 | 0.0617 (19) | 0.0566 (18) | 0.0591 (19) | 0.0092 (15) | 0.0251 (16) | 0.0092 (15) |
C9 | 0.0543 (18) | 0.072 (2) | 0.075 (2) | 0.0182 (15) | 0.0457 (17) | 0.0238 (17) |
C10 | 0.0617 (18) | 0.0580 (18) | 0.075 (2) | 0.0287 (15) | 0.0436 (17) | 0.0208 (16) |
C11 | 0.0386 (13) | 0.0403 (13) | 0.0372 (13) | 0.0119 (10) | 0.0157 (11) | 0.0063 (10) |
C12 | 0.0373 (12) | 0.0372 (12) | 0.0346 (12) | 0.0100 (10) | 0.0112 (10) | 0.0072 (10) |
C13 | 0.0568 (16) | 0.0407 (14) | 0.0500 (16) | 0.0176 (13) | 0.0181 (13) | 0.0071 (12) |
C14 | 0.073 (2) | 0.0354 (14) | 0.074 (2) | 0.0138 (14) | 0.0228 (18) | 0.0132 (14) |
C15 | 0.078 (2) | 0.0462 (17) | 0.097 (3) | 0.0088 (16) | 0.049 (2) | 0.0330 (17) |
C16 | 0.067 (2) | 0.0456 (16) | 0.090 (2) | 0.0122 (14) | 0.0504 (19) | 0.0229 (16) |
C17 | 0.0393 (15) | 0.0692 (19) | 0.0479 (15) | 0.0069 (13) | 0.0247 (13) | 0.0119 (14) |
C18 | 0.0305 (12) | 0.0452 (14) | 0.0499 (15) | 0.0083 (10) | 0.0196 (11) | 0.0111 (11) |
C19 | 0.0434 (15) | 0.0562 (17) | 0.0664 (19) | −0.0021 (13) | 0.0262 (14) | 0.0210 (15) |
C20 | 0.0389 (15) | 0.0493 (16) | 0.077 (2) | −0.0103 (12) | 0.0170 (15) | 0.0051 (15) |
C21 | 0.0367 (13) | 0.0525 (16) | 0.0486 (16) | 0.0028 (12) | 0.0087 (12) | −0.0012 (13) |
C22 | 0.0384 (13) | 0.0467 (14) | 0.0441 (14) | 0.0028 (11) | 0.0165 (12) | 0.0102 (12) |
C23 | 0.0314 (12) | 0.0347 (12) | 0.0455 (14) | 0.0047 (10) | 0.0160 (11) | 0.0061 (10) |
C24 | 0.0407 (14) | 0.0352 (13) | 0.0491 (15) | 0.0008 (11) | 0.0104 (12) | 0.0079 (12) |
Zn1 | 0.04219 (19) | 0.03371 (17) | 0.04103 (19) | 0.00763 (12) | 0.02487 (14) | 0.00712 (12) |
N1 | 0.0539 (16) | 0.077 (2) | 0.0604 (18) | −0.0016 (15) | 0.0026 (14) | −0.0046 (15) |
N2 | 0.0599 (15) | 0.0532 (14) | 0.0574 (15) | 0.0075 (12) | 0.0395 (13) | 0.0110 (11) |
N3 | 0.0587 (14) | 0.0411 (12) | 0.0493 (13) | 0.0113 (10) | 0.0346 (11) | 0.0102 (10) |
N4 | 0.0606 (15) | 0.0407 (12) | 0.0460 (13) | 0.0110 (11) | 0.0254 (11) | 0.0056 (10) |
N5 | 0.0450 (12) | 0.0422 (12) | 0.0544 (13) | 0.0050 (10) | 0.0288 (11) | 0.0124 (10) |
N6 | 0.0392 (11) | 0.0351 (10) | 0.0414 (11) | 0.0058 (9) | 0.0202 (9) | 0.0059 (9) |
N7 | 0.0463 (12) | 0.0344 (11) | 0.0526 (13) | 0.0084 (9) | 0.0252 (11) | 0.0104 (9) |
O1 | 0.0434 (10) | 0.0361 (9) | 0.0475 (10) | 0.0010 (7) | 0.0204 (8) | 0.0079 (8) |
O2 | 0.0457 (15) | 0.393 (7) | 0.0555 (17) | 0.021 (3) | 0.0304 (13) | 0.017 (3) |
O3 | 0.0376 (10) | 0.0464 (10) | 0.0458 (10) | 0.0068 (8) | 0.0176 (8) | 0.0030 (8) |
O4 | 0.0814 (15) | 0.0387 (10) | 0.0495 (12) | −0.0046 (10) | 0.0213 (11) | 0.0036 (9) |
O5 | 0.0723 (15) | 0.0643 (14) | 0.0923 (18) | −0.0264 (12) | 0.0529 (15) | −0.0085 (13) |
O6 | 0.0778 (18) | 0.140 (3) | 0.0511 (14) | −0.0108 (18) | 0.0169 (14) | 0.0024 (16) |
O7 | 0.124 (3) | 0.145 (3) | 0.082 (2) | −0.076 (3) | −0.021 (2) | 0.003 (2) |
O1W | 0.196 (7) | 0.229 (8) | 0.280 (10) | 0.104 (7) | 0.185 (8) | 0.091 (8) |
C1—N2 | 1.343 (4) | C16—N7 | 1.333 (4) |
C1—C2 | 1.357 (5) | C16—H16 | 0.9300 |
C1—H1 | 0.9300 | C17—O2 | 1.221 (4) |
C2—C3 | 1.396 (4) | C17—O3 | 1.231 (3) |
C2—H2 | 0.9300 | C17—C18 | 1.506 (4) |
C3—N3 | 1.334 (4) | C18—C19 | 1.390 (4) |
C3—C4 | 1.460 (4) | C18—C23 | 1.396 (4) |
C4—N4 | 1.352 (4) | C19—C20 | 1.374 (5) |
C4—C5 | 1.390 (4) | C19—H19 | 0.9300 |
C5—C6 | 1.369 (5) | C20—C21 | 1.371 (5) |
C5—H5 | 0.9300 | C20—H20 | 0.9300 |
C6—C7 | 1.390 (6) | C21—C22 | 1.376 (4) |
C6—H6 | 0.9300 | C21—N1 | 1.474 (4) |
C7—C8 | 1.382 (5) | C22—C23 | 1.383 (4) |
C7—H7 | 0.9300 | C22—H22 | 0.9300 |
C8—N4 | 1.330 (4) | C23—C24 | 1.518 (3) |
C8—H8 | 0.9300 | C24—O5 | 1.235 (4) |
C9—N5 | 1.341 (4) | C24—O4 | 1.250 (4) |
C9—C10 | 1.363 (5) | Zn1—O1 | 2.0871 (18) |
C9—H9 | 0.9300 | Zn1—N3 | 2.089 (2) |
C10—C11 | 1.393 (4) | Zn1—O3 | 2.0981 (18) |
C10—H10 | 0.9300 | Zn1—N6 | 2.147 (2) |
C11—N6 | 1.336 (3) | Zn1—N7 | 2.188 (2) |
C11—C12 | 1.460 (4) | Zn1—N4 | 2.287 (2) |
C12—N7 | 1.342 (3) | N1—O7 | 1.204 (4) |
C12—C13 | 1.391 (4) | N1—O6 | 1.211 (4) |
C13—C14 | 1.371 (5) | N2—N3 | 1.341 (3) |
C13—H13 | 0.9300 | N2—H2A | 0.8600 |
C14—C15 | 1.359 (5) | N5—N6 | 1.337 (3) |
C14—H14 | 0.9300 | N5—H5A | 0.8600 |
C15—C16 | 1.379 (4) | O1—H1W | 0.820 (13) |
C15—H15 | 0.9300 | O1—H2W | 0.82 (3) |
N2—C1—C2 | 108.1 (3) | C18—C19—H19 | 119.3 |
N2—C1—H1 | 126.0 | C21—C20—C19 | 118.3 (3) |
C2—C1—H1 | 126.0 | C21—C20—H20 | 120.9 |
C1—C2—C3 | 105.1 (3) | C19—C20—H20 | 120.9 |
C1—C2—H2 | 127.4 | C20—C21—C22 | 122.1 (3) |
C3—C2—H2 | 127.4 | C20—C21—N1 | 118.7 (3) |
N3—C3—C2 | 109.9 (3) | C22—C21—N1 | 119.2 (3) |
N3—C3—C4 | 116.7 (2) | C21—C22—C23 | 119.5 (3) |
C2—C3—C4 | 133.4 (3) | C21—C22—H22 | 120.2 |
N4—C4—C5 | 122.4 (3) | C23—C22—H22 | 120.2 |
N4—C4—C3 | 114.5 (2) | C22—C23—C18 | 119.3 (2) |
C5—C4—C3 | 123.1 (3) | C22—C23—C24 | 117.3 (2) |
C6—C5—C4 | 118.8 (3) | C18—C23—C24 | 123.3 (2) |
C6—C5—H5 | 120.6 | O5—C24—O4 | 125.7 (3) |
C4—C5—H5 | 120.6 | O5—C24—C23 | 116.6 (2) |
C5—C6—C7 | 119.3 (3) | O4—C24—C23 | 117.6 (3) |
C5—C6—H6 | 120.4 | O1—Zn1—N3 | 96.46 (8) |
C7—C6—H6 | 120.4 | O1—Zn1—O3 | 86.38 (7) |
C8—C7—C6 | 118.5 (4) | N3—Zn1—O3 | 96.57 (9) |
C8—C7—H7 | 120.8 | O1—Zn1—N6 | 94.67 (8) |
C6—C7—H7 | 120.8 | N3—Zn1—N6 | 163.63 (9) |
N4—C8—C7 | 123.2 (3) | O3—Zn1—N6 | 96.08 (7) |
N4—C8—H8 | 118.4 | O1—Zn1—N7 | 168.95 (8) |
C7—C8—H8 | 118.4 | N3—Zn1—N7 | 94.18 (9) |
N5—C9—C10 | 107.6 (3) | O3—Zn1—N7 | 89.49 (8) |
N5—C9—H9 | 126.2 | N6—Zn1—N7 | 75.57 (8) |
C10—C9—H9 | 126.2 | O1—Zn1—N4 | 93.00 (8) |
C9—C10—C11 | 105.1 (3) | N3—Zn1—N4 | 73.48 (9) |
C9—C10—H10 | 127.5 | O3—Zn1—N4 | 169.91 (8) |
C11—C10—H10 | 127.5 | N6—Zn1—N4 | 94.01 (8) |
N6—C11—C10 | 110.3 (2) | N7—Zn1—N4 | 92.85 (8) |
N6—C11—C12 | 118.0 (2) | O7—N1—O6 | 122.6 (3) |
C10—C11—C12 | 131.8 (2) | O7—N1—C21 | 118.0 (4) |
N7—C12—C13 | 121.8 (3) | O6—N1—C21 | 119.4 (3) |
N7—C12—C11 | 114.8 (2) | N3—N2—C1 | 110.5 (3) |
C13—C12—C11 | 123.4 (2) | N3—N2—H2A | 124.7 |
C14—C13—C12 | 118.9 (3) | C1—N2—H2A | 124.7 |
C14—C13—H13 | 120.6 | C3—N3—N2 | 106.3 (2) |
C12—C13—H13 | 120.6 | C3—N3—Zn1 | 120.6 (2) |
C15—C14—C13 | 119.5 (3) | N2—N3—Zn1 | 132.65 (19) |
C15—C14—H14 | 120.3 | C8—N4—C4 | 117.9 (3) |
C13—C14—H14 | 120.3 | C8—N4—Zn1 | 127.8 (2) |
C14—C15—C16 | 119.0 (3) | C4—N4—Zn1 | 114.3 (2) |
C14—C15—H15 | 120.5 | N6—N5—C9 | 111.4 (2) |
C16—C15—H15 | 120.5 | N6—N5—H5A | 124.3 |
N7—C16—C15 | 122.8 (3) | C9—N5—H5A | 124.3 |
N7—C16—H16 | 118.6 | C11—N6—N5 | 105.7 (2) |
C15—C16—H16 | 118.6 | C11—N6—Zn1 | 115.52 (17) |
O2—C17—O3 | 126.1 (3) | N5—N6—Zn1 | 138.68 (16) |
O2—C17—C18 | 116.8 (3) | C16—N7—C12 | 118.1 (2) |
O3—C17—C18 | 117.0 (2) | C16—N7—Zn1 | 126.03 (19) |
C19—C18—C23 | 119.3 (3) | C12—N7—Zn1 | 115.32 (17) |
C19—C18—C17 | 117.7 (3) | Zn1—O1—H1W | 101 (3) |
C23—C18—C17 | 122.8 (2) | Zn1—O1—H2W | 119 (3) |
C20—C19—C18 | 121.4 (3) | H1W—O1—H2W | 114 (3) |
C20—C19—H19 | 119.3 | C17—O3—Zn1 | 139.12 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H2W···O5i | 0.82 (3) | 1.81 (3) | 2.627 (3) | 174 (3) |
N5—H5A···O4i | 0.86 | 1.95 | 2.788 (3) | 166 |
N2—H2A···O2 | 0.86 | 1.82 | 2.606 (4) | 150 |
Symmetry code: (i) −x+2, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C8H3NO6)(C8H7N3)2(H2O)]·0.5H2O |
Mr | 591.84 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 294 |
a, b, c (Å) | 10.4284 (6), 11.1844 (7), 11.9656 (8) |
α, β, γ (°) | 96.508 (3), 112.091 (3), 96.366 (3) |
V (Å3) | 1266.84 (14) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.03 |
Crystal size (mm) | 0.12 × 0.10 × 0.08 |
Data collection | |
Diffractometer | Bruker APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.886, 0.922 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9062, 4258, 3825 |
Rint | 0.020 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.104, 1.00 |
No. of reflections | 4258 |
No. of parameters | 364 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.65, −0.42 |
Computer programs: APEX2 (Bruker, 2004), SAINT-Plus (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H2W···O5i | 0.82 (3) | 1.81 (3) | 2.627 (3) | 174 (3) |
N5—H5A···O4i | 0.86 | 1.95 | 2.788 (3) | 166 |
N2—H2A···O2 | 0.86 | 1.82 | 2.606 (4) | 150 |
Symmetry code: (i) −x+2, −y+2, −z+1. |
Acknowledgements
The authors acknowledge financial support from the Science Foundation of Beihua University.
References
Bruker (2001). SAINT-Plus and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2004). APEX2. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Hagrman, P. J., Hagrman, D. & Zubieta, J. (1999). Angew. Chem. Int. Ed. 111, 2798–2848. CrossRef Google Scholar
Kitagawa, S., Kitaura, R. & Noro, S. I. (2004). Angew. Chem. Int. Ed. 116, 2388–2430. CrossRef Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The synthesis of entangled metal-organic frameworks (MOFs) has attracted continuous research interest not only because of their appealing structural and topological novelty, but also due to their unusual optical, electronic, magnetic, and catalytic properties, as well as their potential medical application (Hagrman et al. (1999); Kitagawa et al. (2004)). Here, we describe the synthesis and structural characterization of the title compound resulting from an attempted MOF synthesis in which Zn and Gd complex building blocks were expected to be the constituents.
Single crystal X-ray diffraction analyses revealed that the asymmetric unit of the title compound, [(Zn(C8H7N3)2(C8NH3O6)(H2O)].(H2O)0.5, consists of one Zn2+ ion, two 3-(2-pyridyl)-1H-pyrazole ligands, one 4-Nitrophthalato ligand, one associated water molecule, and half water of crystallization. As shown in Figure 1, the Zn2+ ion is hexacoordinated by four N atoms from 3-(2-pyridyl)-1H-pyrazole ligands and two oxygen atoms from 4-Nitrophthalato ligand and one associated water molecule, exhibiting a distorted octahedral arrangement of ZnN4O2. Moreover, the Rms deviations of the two 3-(2-pyridyl)-1H-pyrazole groups from planarity are 0.03 (1) and 0.35 (1) Å, respectively. The dihedral angle between the two 3-(2-pyridyl)-1H-pyrazole planars is 67.31 (4) Å. Interestingly, between the molecules, there is π-π stacking interactions with the face-to-face separation (ca 3.64 (1) Å) between the 3-(2-pyridyl)-1H-pyrazole planars. Meantime, there are extensive hydrogen bonds between water of crystallization, associated water molecule, and 3-(2-pyridyl)-1H-pyrazole, and leads to a consolidation of the structure (Figure 2).