organic compounds
3-(5-Methyl-3-phenyl-1H-pyrazol-1-yl)propanamide monohydrate
aState Key Lab. Base of Novel Functional Materials and Preparation Science, Faculty of Materials Science and Chemical Engineering, Ningbo University, Ningbo, Zhejiang 315211, People's Republic of China
*Correspondence e-mail: zjf@nbu.edu.cn
In the title compound, C13H15N3O·H2O, the dihedral angle between the pyrazole and benzene rings is 26.6 (2)° and the N—C—C—C torsion angle is 153.6 (3)°. In the crystal, adjacent molecules are linked by N—H⋯N, N—H⋯O and O—H⋯O hydrogen bonds into a network structure running along the a axis.
Related literature
For the potential applications of substituted pyrazole derivatives as ligands, see: Shaw et al. (2004;) Pal et al. (2005). For the design and synthesis of various pyrazole ligands with special structural properties to fulfill the stereochemical requirements of the metal-binding sites, see: Bell et al. (2003); Paul et al. (2004) For pyrazole ligands with propanamide side-chains, see: Huang et al. (2009); Zhang et al. (2009).
Experimental
Crystal data
|
Refinement
|
Data collection: RAPID-AUTO (Rigaku, 1998); cell RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: CrystalStructure.
Supporting information
https://doi.org/10.1107/S160053681005035X/im2245sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S160053681005035X/im2245Isup2.hkl
A mixture of 5-methyl-3-phenyl-1H-pyrazole (1.58 g, 10 mmol), sodium hydroxide solution (2 mol/l, 2 ml) and N,N'-dimethylformamide (DMF) (50 ml) was stirred and heated to 333 K. A solution of acrylamide (1.0 g, 14 mmol) in DMF (10 ml) was added dropwise over a period of 15 minutes. The reaction was conducted by heating for 7 h at 333 K. The mixture was cooled to room temperature and filtered. Afterwards DMF was removed by vacuum distillation to give 1.94 g analytically pure 3-(5-methyl-3-phenyl-1H-pyrazol-1- yl)propanamide (yield: 85%; mp: 386 K). Recrystallization an acetonitrile water mixture in a 1:1 ratio yielded colorless single-crystals suitable for X-ray
Analysis calculated for C13H17N3O2: C 63.14, H 6.93, N 16.99%; found: C 63.25, H 6.87, N 16.92%.In the absence of significant
effects, Friedel pairs were averaged. Atoms H2C and H2D (for H2O) were located in difference Fourier map and refined isotropically, with restrains of O2—H2C = 0.8506 Å, O2—H2D = 0.8424Å and H2C—O2—H2D = 104.5°. The remaining H atoms were positioned geometrically with N—H = 0.86Å (for NH2) and C—H = 0.93 (aromatic) or 0.96 (methyl) or 0.97Å (methylene) and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C,N), where x = 1.5 for methyl H and x = 1.2 for all other H atoms.In recent years, there has been considerable interest in the use of hemilabile ligands containing substituted pyrazole groups because of their potential applications in catalysis and their ability for complexes construction (Shaw et al., 2004; Pal et al., 2005). Nowadays, much attention has been focused on the design of various pyrazole ligands with special structural properties to fulfill the specific stereochemical requirement of a particular metal-binding site (Bell et al., 2003; Paul et al., 2004). Some new pyrazole ligands combined with propanamide side-chains were reported (Zhang et al., 2009; Huang et al., 2009). Here, we report another new N-pyrazolylpropanamide ligand, C13H15N3O . H2O, (Scheme 1).
As is shown in Figure 1, in the title compound, the dihedral angle between pyrazole ring and benzene ring is 26.6 (2)° and the torsion angle N3—C7—C8—C13 is 153.6 (3)°. In the
there is a N—H···N hydrogen bond between two organic molecules. Additional O—H···O and N—H···O hydrogen-bonding interactions between the organic molecules and water produce a network structure (Figure 2). The hydrogen bonds in the network structure relate three organic molecules and one water molecule, where two O atoms in the O—H···O hydrogen bonds originate from two organic molecules while one N atom in the N—H···O hydrogen bond from a third organic molecule. The hydrogen bond geometry parameters are listed in Table 1.For the potential applications of substituted pyrazole derivatives as ligands, see: Shaw et al. (2004; )Pal et al. (2005). For the design and synthesis of various pyrazole ligands with special structural properties to fulfill stereochemical requirement of the metal-binding sites, see: Bell et al. (2003); Paul et al. (2004) For pyrazole ligands with propanamide side-chains, see: Huang et al. (2009); Zhang et al. (2009).
Data collection: RAPID-AUTO (Rigaku, 1998); cell
RAPID-AUTO (Rigaku, 1998); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2004).C13H15N3O·H2O | F(000) = 528 |
Mr = 247.30 | Dx = 1.198 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 13460 reflections |
a = 6.5482 (13) Å | θ = 3.2–27.4° |
b = 12.609 (3) Å | µ = 0.08 mm−1 |
c = 16.606 (3) Å | T = 296 K |
V = 1371.1 (5) Å3 | Chip, colorless |
Z = 4 | 0.45 × 0.23 × 0.12 mm |
Rigaku R-AXIS RAPID diffractometer | 1815 independent reflections |
Radiation source: fine-focus sealed tube | 1323 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.056 |
ω scans | θmax = 27.4°, θmin = 3.2° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −8→7 |
Tmin = 0.977, Tmax = 0.990 | k = −16→16 |
13414 measured reflections | l = −21→21 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.050 | H-atom parameters constrained |
wR(F2) = 0.140 | w = 1/[σ2(Fo2) + (0.0693P)2 + 0.2276P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max = 0.001 |
1815 reflections | Δρmax = 0.23 e Å−3 |
164 parameters | Δρmin = −0.16 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.048 (6) |
C13H15N3O·H2O | V = 1371.1 (5) Å3 |
Mr = 247.30 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 6.5482 (13) Å | µ = 0.08 mm−1 |
b = 12.609 (3) Å | T = 296 K |
c = 16.606 (3) Å | 0.45 × 0.23 × 0.12 mm |
Rigaku R-AXIS RAPID diffractometer | 1815 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 1323 reflections with I > 2σ(I) |
Tmin = 0.977, Tmax = 0.990 | Rint = 0.056 |
13414 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.140 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.23 e Å−3 |
1815 reflections | Δρmin = −0.16 e Å−3 |
164 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.1503 (3) | 0.37278 (16) | 0.44426 (14) | 0.0598 (6) | |
N3 | 0.6165 (4) | 0.63188 (17) | 0.33836 (14) | 0.0455 (6) | |
N2 | 0.4723 (4) | 0.58241 (16) | 0.29243 (14) | 0.0456 (6) | |
C7 | 0.7043 (4) | 0.7022 (2) | 0.28840 (17) | 0.0432 (6) | |
C1 | 0.0612 (4) | 0.4538 (2) | 0.42065 (18) | 0.0451 (7) | |
C3 | 0.3511 (4) | 0.4985 (2) | 0.32841 (19) | 0.0505 (7) | |
H3A | 0.4382 | 0.4554 | 0.3625 | 0.061* | |
H3B | 0.2976 | 0.4534 | 0.2861 | 0.061* | |
N1 | −0.1361 (4) | 0.4692 (2) | 0.43135 (16) | 0.0572 (7) | |
H1A | −0.2084 | 0.4220 | 0.4556 | 0.069* | |
H1B | −0.1926 | 0.5264 | 0.4141 | 0.069* | |
C6 | 0.6151 (5) | 0.6976 (2) | 0.21225 (18) | 0.0529 (7) | |
H6A | 0.6495 | 0.7386 | 0.1677 | 0.063* | |
C8 | 0.8697 (5) | 0.7707 (2) | 0.31861 (18) | 0.0463 (7) | |
C2 | 0.1763 (5) | 0.5407 (2) | 0.3778 (2) | 0.0578 (8) | |
H2A | 0.0830 | 0.5788 | 0.3428 | 0.069* | |
H2B | 0.2287 | 0.5905 | 0.4172 | 0.069* | |
C4 | 0.4663 (5) | 0.6208 (2) | 0.21594 (18) | 0.0509 (7) | |
O2 | −0.4388 (4) | 0.32706 (19) | 0.4938 (2) | 0.0888 (10) | |
H2D | −0.4329 | 0.2662 | 0.5146 | 0.168* | |
H2C | −0.5655 | 0.3375 | 0.4857 | 0.092* | |
C9 | 0.8839 (5) | 0.7964 (3) | 0.4002 (2) | 0.0596 (8) | |
H9A | 0.7863 | 0.7708 | 0.4360 | 0.072* | |
C12 | 1.1724 (6) | 0.8742 (3) | 0.2958 (3) | 0.0849 (12) | |
H12A | 1.2706 | 0.9003 | 0.2605 | 0.102* | |
C13 | 1.0158 (5) | 0.8108 (2) | 0.2666 (2) | 0.0612 (9) | |
H13A | 1.0090 | 0.7952 | 0.2119 | 0.073* | |
C10 | 1.0405 (6) | 0.8592 (3) | 0.4285 (2) | 0.0767 (11) | |
H10A | 1.0489 | 0.8748 | 0.4832 | 0.092* | |
C5 | 0.3188 (6) | 0.5832 (3) | 0.1551 (2) | 0.0749 (11) | |
H5A | 0.2362 | 0.5278 | 0.1778 | 0.112* | |
H5B | 0.3913 | 0.5563 | 0.1092 | 0.112* | |
H5C | 0.2328 | 0.6410 | 0.1387 | 0.112* | |
C11 | 1.1840 (7) | 0.8988 (4) | 0.3764 (3) | 0.0923 (14) | |
H11A | 1.2884 | 0.9421 | 0.3955 | 0.111* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0465 (11) | 0.0555 (11) | 0.0775 (15) | 0.0054 (11) | 0.0067 (12) | 0.0248 (11) |
N3 | 0.0438 (12) | 0.0434 (12) | 0.0493 (13) | −0.0047 (11) | 0.0011 (11) | 0.0076 (10) |
N2 | 0.0465 (13) | 0.0423 (11) | 0.0479 (13) | −0.0057 (11) | 0.0041 (12) | 0.0079 (10) |
C7 | 0.0445 (14) | 0.0357 (12) | 0.0495 (15) | −0.0022 (12) | 0.0054 (14) | 0.0087 (12) |
C1 | 0.0418 (15) | 0.0457 (14) | 0.0480 (16) | 0.0001 (13) | 0.0033 (13) | 0.0050 (13) |
C3 | 0.0473 (15) | 0.0414 (13) | 0.0628 (18) | −0.0064 (14) | 0.0083 (15) | 0.0044 (13) |
N1 | 0.0415 (13) | 0.0558 (14) | 0.0742 (18) | 0.0034 (12) | 0.0085 (14) | 0.0194 (13) |
C6 | 0.0634 (18) | 0.0479 (14) | 0.0475 (16) | −0.0078 (15) | 0.0016 (16) | 0.0092 (13) |
C8 | 0.0443 (14) | 0.0376 (12) | 0.0569 (17) | −0.0012 (12) | 0.0000 (15) | 0.0088 (12) |
C2 | 0.0488 (17) | 0.0455 (14) | 0.079 (2) | 0.0016 (15) | 0.0151 (17) | 0.0110 (15) |
C4 | 0.0569 (17) | 0.0487 (14) | 0.0470 (15) | −0.0042 (15) | 0.0000 (15) | 0.0032 (13) |
O2 | 0.0472 (13) | 0.0764 (16) | 0.143 (3) | −0.0005 (12) | 0.0038 (16) | 0.0493 (17) |
C9 | 0.0590 (19) | 0.0586 (17) | 0.0611 (19) | −0.0053 (17) | 0.0007 (17) | 0.0017 (15) |
C12 | 0.060 (2) | 0.102 (3) | 0.092 (3) | −0.030 (2) | 0.008 (2) | 0.011 (2) |
C13 | 0.0547 (18) | 0.0627 (18) | 0.066 (2) | −0.0080 (17) | 0.0053 (17) | 0.0067 (16) |
C10 | 0.073 (2) | 0.084 (2) | 0.074 (2) | −0.014 (2) | −0.014 (2) | −0.007 (2) |
C5 | 0.086 (3) | 0.078 (2) | 0.060 (2) | −0.019 (2) | −0.014 (2) | 0.0029 (18) |
C11 | 0.069 (3) | 0.109 (3) | 0.098 (3) | −0.033 (3) | −0.011 (2) | −0.003 (3) |
O1—C1 | 1.240 (3) | C2—H2A | 0.9700 |
N3—C7 | 1.344 (3) | C2—H2B | 0.9700 |
N3—N2 | 1.365 (3) | C4—C5 | 1.476 (4) |
N2—C4 | 1.360 (4) | O2—H2D | 0.8424 |
N2—C3 | 1.451 (3) | O2—H2C | 0.8505 |
C7—C6 | 1.394 (4) | C9—C10 | 1.378 (5) |
C7—C8 | 1.473 (4) | C9—H9A | 0.9300 |
C1—N1 | 1.319 (4) | C12—C11 | 1.376 (6) |
C1—C2 | 1.509 (4) | C12—C13 | 1.388 (5) |
C3—C2 | 1.505 (4) | C12—H12A | 0.9300 |
C3—H3A | 0.9700 | C13—H13A | 0.9300 |
C3—H3B | 0.9700 | C10—C11 | 1.371 (6) |
N1—H1A | 0.8600 | C10—H10A | 0.9300 |
N1—H1B | 0.8600 | C5—H5A | 0.9600 |
C6—C4 | 1.375 (4) | C5—H5B | 0.9600 |
C6—H6A | 0.9300 | C5—H5C | 0.9600 |
C8—C13 | 1.385 (4) | C11—H11A | 0.9300 |
C8—C9 | 1.397 (4) | ||
C7—N3—N2 | 104.6 (2) | C3—C2—H2B | 109.1 |
C4—N2—N3 | 112.3 (2) | C1—C2—H2B | 109.1 |
C4—N2—C3 | 128.9 (3) | H2A—C2—H2B | 107.9 |
N3—N2—C3 | 118.8 (2) | N2—C4—C6 | 105.8 (3) |
N3—C7—C6 | 110.7 (2) | N2—C4—C5 | 122.9 (3) |
N3—C7—C8 | 119.4 (2) | C6—C4—C5 | 131.3 (3) |
C6—C7—C8 | 129.9 (2) | H2D—O2—H2C | 104.5 |
O1—C1—N1 | 122.7 (3) | C10—C9—C8 | 120.9 (3) |
O1—C1—C2 | 120.8 (3) | C10—C9—H9A | 119.6 |
N1—C1—C2 | 116.5 (3) | C8—C9—H9A | 119.6 |
N2—C3—C2 | 112.5 (2) | C11—C12—C13 | 120.7 (4) |
N2—C3—H3A | 109.1 | C11—C12—H12A | 119.6 |
C2—C3—H3A | 109.1 | C13—C12—H12A | 119.6 |
N2—C3—H3B | 109.1 | C8—C13—C12 | 120.1 (3) |
C2—C3—H3B | 109.1 | C8—C13—H13A | 119.9 |
H3A—C3—H3B | 107.8 | C12—C13—H13A | 119.9 |
C1—N1—H1A | 120.0 | C11—C10—C9 | 120.3 (4) |
C1—N1—H1B | 120.0 | C11—C10—H10A | 119.9 |
H1A—N1—H1B | 120.0 | C9—C10—H10A | 119.9 |
C4—C6—C7 | 106.6 (3) | C4—C5—H5A | 109.5 |
C4—C6—H6A | 126.7 | C4—C5—H5B | 109.5 |
C7—C6—H6A | 126.7 | H5A—C5—H5B | 109.5 |
C13—C8—C9 | 118.4 (3) | C4—C5—H5C | 109.5 |
C13—C8—C7 | 120.6 (3) | H5A—C5—H5C | 109.5 |
C9—C8—C7 | 121.0 (3) | H5B—C5—H5C | 109.5 |
C3—C2—C1 | 112.4 (2) | C10—C11—C12 | 119.6 (4) |
C3—C2—H2A | 109.1 | C10—C11—H11A | 120.2 |
C1—C2—H2A | 109.1 | C12—C11—H11A | 120.2 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2 | 0.86 | 2.03 | 2.867 (3) | 165 |
N1—H1B···N3i | 0.86 | 2.22 | 3.036 (3) | 159 |
O2—H2D···O1ii | 0.84 | 1.96 | 2.783 (3) | 166.2 |
O2—H2C···O1i | 0.85 | 2.03 | 2.872 (3) | 168.5 |
Symmetry codes: (i) x−1, y, z; (ii) x−1/2, −y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C13H15N3O·H2O |
Mr | 247.30 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 296 |
a, b, c (Å) | 6.5482 (13), 12.609 (3), 16.606 (3) |
V (Å3) | 1371.1 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.45 × 0.23 × 0.12 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.977, 0.990 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13414, 1815, 1323 |
Rint | 0.056 |
(sin θ/λ)max (Å−1) | 0.648 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.140, 1.08 |
No. of reflections | 1815 |
No. of parameters | 164 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.23, −0.16 |
Computer programs: RAPID-AUTO (Rigaku, 1998), CrystalStructure (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2 | 0.86 | 2.03 | 2.867 (3) | 164.6 |
N1—H1B···N3i | 0.86 | 2.22 | 3.036 (3) | 159.2 |
O2—H2D···O1ii | 0.84 | 1.96 | 2.783 (3) | 166.2 |
O2—H2C···O1i | 0.85 | 2.03 | 2.872 (3) | 168.5 |
Symmetry codes: (i) x−1, y, z; (ii) x−1/2, −y+1/2, −z+1. |
Acknowledgements
This project was sponsored by the K. C. Wong Magna Fund in Ningbo University and supported by the Zhejiang Provincial Natural Science Foundation of China (grant No. Y4090657) and the Ningbo Natural Science Foundation (grant No. 2009 A610037). We thank Mr X. Li and B.-B. Liu for the help of structure analysis and Mr J.-L. Lin for the diffraction data collection.
References
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In recent years, there has been considerable interest in the use of hemilabile ligands containing substituted pyrazole groups because of their potential applications in catalysis and their ability for complexes construction (Shaw et al., 2004; Pal et al., 2005). Nowadays, much attention has been focused on the design of various pyrazole ligands with special structural properties to fulfill the specific stereochemical requirement of a particular metal-binding site (Bell et al., 2003; Paul et al., 2004). Some new pyrazole ligands combined with propanamide side-chains were reported (Zhang et al., 2009; Huang et al., 2009). Here, we report another new N-pyrazolylpropanamide ligand, C13H15N3O . H2O, (Scheme 1).
As is shown in Figure 1, in the title compound, the dihedral angle between pyrazole ring and benzene ring is 26.6 (2)° and the torsion angle N3—C7—C8—C13 is 153.6 (3)°. In the crystal structure, there is a N—H···N hydrogen bond between two organic molecules. Additional O—H···O and N—H···O hydrogen-bonding interactions between the organic molecules and water produce a network structure (Figure 2). The hydrogen bonds in the network structure relate three organic molecules and one water molecule, where two O atoms in the O—H···O hydrogen bonds originate from two organic molecules while one N atom in the N—H···O hydrogen bond from a third organic molecule. The hydrogen bond geometry parameters are listed in Table 1.