organic compounds
5-[(4-Methoxybenzyl)sulfanyl]-2-methyl-1,3,4-thiadiazole
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand, cDepartment of Chemistry, Manipal Institute of Technology, Manipal 576 104, India, dOrganic Chemistry Division, Department of Chemistry, National Institute of Technology-Karnataka, Surathkal, Mangalore 575 025, India, and eDepartment of Printing, Manipal Institute of Technology, Manipal 576 104, India
*Correspondence e-mail: hkfun@usm.my
The title molecule, C11H12N2OS2, is twisted with a dihedral angle of 83.63 (12)° between the 1,3,4-thiadiazole and benzene rings. The methoxy group deviates slightly from the attached benzene ring, with a C—C—O—C torsion angle of 4.2 (4)°. In the crystal, molecules are linked by weak C—H⋯N interactions and stacked along the c axis.
Related literature
For bond-length data, see: Allen et al. (1987). For a related structure, see: Wang et al. (2010). For background to and applications of thiadiazole derivatives, see: Bernard et al. (1985); Chandrakantha et al. (2010); El-Sabbagh et al. (2009); Isloor et al. (2010); Kalluraya et al. (2004). For the stability of the temperature controller, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
|
Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810051858/is2640sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810051858/is2640Isup2.hkl
The title compound was synthesized by adding 4-methoxybenzylbromide (3.02 g, 0.0151 mol) dropwise to a stirred solution of 5-methyl-1,3,4-thiadiazole-2-thiol (2.00 g, 0.0151 mol) and anhydrous potassiumcarbonate (4.16 g, 0.03 mol) in dry acetonitrile (50 ml) at room temperature and the reaction mixture was stirred at room temperature for 5 h. After the completion of reaction, the reaction mixture was filtered and the filtrate was concentrated. The crude product was recrystallized with hot ethanol to afford the title compound as yellow solid (2.00 g, yield 57%). Yellow plate-shaped single crystals of the title compound suitable for x-ray
were recrystalized from ethanol by the slow evaporation of the solvent at room temperature after several days (m.p. 413–415 K).All H atoms were positioned geometrically and allowed to ride on their parent atoms, with d(C—H) = 0.93 Å for aromatic, 0.97 Å for CH2 and 0.96 Å for CH3 atoms. The Uiso(H) values were constrained to be 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for the remaining H atoms. A rotating group model was used for the methyl groups.
Thiadiazole are a class of
having a five membered ring. They occur in nature and are predominant among all types of pharmaceuticals, agrochemicals and veterinary products (El-Sabbagh et al., 2009). The amino and mercapto groups in thiadiazole are readily-accessible nucleophilic centers. 1,3,4-Thiadiazole exhibit a wide spectrum of biological activities (Bernard et al., 1985). Due to the presence of the –N—C—S moiety (Kalluraya et al., 2004), they are found to be used as antibacterial, antimicrobial and anti-inflammatory agents (Chandrakantha et al., 2010). Antibacterial and antifungal (Isloor et al., 2010) activities of the azoles are most widely studied and azoles are also used as antimicrobial agents. Herein we report the of the title 1,3,4-thiadiazole derivative, (I).The molecule of (I) (Fig. 1) is twisted with a dihedral angle between the 1,3,4-thiadiazole and benzene rings being 83.63 (12)°. Atoms C3, S2, C4 and C5 lie nearly on the same plane with r.m.s. 0.0517 (5) Å and the torsion angle C3–S2–C4–C5 = 172.25 (18)°. The mean plane through C3/S2/C4/C5 makes the dihedral angles of 9.02 (15) and 75.92 (16)° with the 1,3,4-thiadiazole and benzene rings, respectively. The methoxy group is slightly deviated with respect to the attached benzene ring with the torsion angle C11–O1–C8–C9 = 4.2 (4)°. The bond distances are of normal values (Allen et al., 1987) and are comparable with the related structure (Wang et al., 2010).
In the crystal packing (Fig. 2), the molecules are linked by C1—H1B···N1 weak interactions (Table 1) and stacked along the c axis. S···N [3.340 (2) Å] short contacts (symmetry codes: x, 1/2 - y, 1/2 + z and x, 1/2 - y, -1/2 + z) are presented in the crystal.
For bond-length data, see: Allen et al. (1987). For a related structure, see: Wang et al. (2010). For background to and applications of thiadiazole derivatives, see: Bernard et al. (1985); Chandrakantha et al. (2010); El-Sabbagh et al. (2009); Isloor et al. (2010); Kalluraya et al. (2004). For the stability of the temperature controller, see: Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C11H12N2OS2 | F(000) = 528 |
Mr = 252.35 | Dx = 1.349 Mg m−3 |
Monoclinic, P21/c | Melting point = 413–415 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 14.7765 (4) Å | Cell parameters from 2828 reflections |
b = 8.6916 (3) Å | θ = 2.7–27.5° |
c = 9.7339 (3) Å | µ = 0.41 mm−1 |
β = 96.477 (1)° | T = 296 K |
V = 1242.16 (7) Å3 | Plate, yellow |
Z = 4 | 0.25 × 0.19 × 0.03 mm |
Bruker APEXII CCD area-detector diffractometer | 2828 independent reflections |
Radiation source: sealed tube | 1660 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
φ and ω scans | θmax = 27.5°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −19→19 |
Tmin = 0.907, Tmax = 0.987 | k = −11→11 |
11429 measured reflections | l = −12→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.118 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0454P)2 + 0.2899P] where P = (Fo2 + 2Fc2)/3 |
2828 reflections | (Δ/σ)max = 0.001 |
147 parameters | Δρmax = 0.23 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C11H12N2OS2 | V = 1242.16 (7) Å3 |
Mr = 252.35 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 14.7765 (4) Å | µ = 0.41 mm−1 |
b = 8.6916 (3) Å | T = 296 K |
c = 9.7339 (3) Å | 0.25 × 0.19 × 0.03 mm |
β = 96.477 (1)° |
Bruker APEXII CCD area-detector diffractometer | 2828 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 1660 reflections with I > 2σ(I) |
Tmin = 0.907, Tmax = 0.987 | Rint = 0.040 |
11429 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | 0 restraints |
wR(F2) = 0.118 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.23 e Å−3 |
2828 reflections | Δρmin = −0.19 e Å−3 |
147 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.43447 (5) | 0.19481 (8) | 0.95596 (7) | 0.0631 (2) | |
S2 | 0.56474 (5) | 0.40517 (9) | 0.81756 (8) | 0.0805 (3) | |
O1 | 0.99330 (14) | 0.4254 (2) | 0.7932 (2) | 0.0899 (7) | |
N1 | 0.30610 (16) | 0.3239 (3) | 0.8041 (2) | 0.0770 (7) | |
N2 | 0.38487 (18) | 0.3952 (3) | 0.7726 (2) | 0.0795 (7) | |
C1 | 0.24763 (19) | 0.1218 (4) | 0.9455 (3) | 0.0849 (9) | |
H1A | 0.1893 | 0.1624 | 0.9098 | 0.127* | |
H1B | 0.2534 | 0.1234 | 1.0447 | 0.127* | |
H1C | 0.2529 | 0.0178 | 0.9141 | 0.127* | |
C2 | 0.32087 (18) | 0.2174 (3) | 0.8958 (2) | 0.0616 (7) | |
C3 | 0.45726 (18) | 0.3383 (3) | 0.8427 (2) | 0.0609 (7) | |
C4 | 0.63995 (18) | 0.2718 (3) | 0.9180 (3) | 0.0672 (7) | |
H4A | 0.6353 | 0.2848 | 1.0159 | 0.081* | |
H4B | 0.6239 | 0.1665 | 0.8925 | 0.081* | |
C5 | 0.73488 (17) | 0.3071 (3) | 0.8867 (2) | 0.0581 (7) | |
C6 | 0.7820 (2) | 0.4335 (3) | 0.9444 (3) | 0.0697 (8) | |
H6A | 0.7551 | 0.4956 | 1.0062 | 0.084* | |
C7 | 0.8673 (2) | 0.4688 (3) | 0.9122 (3) | 0.0738 (8) | |
H7A | 0.8977 | 0.5539 | 0.9528 | 0.089* | |
C8 | 0.90874 (18) | 0.3794 (3) | 0.8200 (3) | 0.0624 (7) | |
C9 | 0.86360 (19) | 0.2522 (3) | 0.7635 (3) | 0.0678 (7) | |
H9A | 0.8909 | 0.1892 | 0.7029 | 0.081* | |
C10 | 0.77752 (18) | 0.2183 (3) | 0.7970 (3) | 0.0653 (7) | |
H10A | 0.7475 | 0.1324 | 0.7573 | 0.078* | |
C11 | 1.0358 (2) | 0.3427 (5) | 0.6936 (4) | 0.1167 (14) | |
H11A | 1.0964 | 0.3813 | 0.6905 | 0.175* | |
H11B | 1.0014 | 0.3548 | 0.6046 | 0.175* | |
H11C | 1.0385 | 0.2356 | 0.7180 | 0.175* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0756 (5) | 0.0557 (4) | 0.0557 (4) | 0.0085 (3) | −0.0024 (3) | 0.0090 (3) |
S2 | 0.0880 (6) | 0.0761 (6) | 0.0793 (5) | 0.0158 (4) | 0.0181 (4) | 0.0313 (4) |
O1 | 0.0779 (14) | 0.0861 (16) | 0.1076 (16) | −0.0229 (11) | 0.0186 (12) | −0.0254 (12) |
N1 | 0.0787 (17) | 0.0942 (19) | 0.0594 (14) | 0.0339 (14) | 0.0139 (12) | 0.0159 (14) |
N2 | 0.0849 (17) | 0.0896 (18) | 0.0665 (15) | 0.0385 (15) | 0.0200 (13) | 0.0277 (14) |
C1 | 0.079 (2) | 0.094 (2) | 0.079 (2) | −0.0025 (18) | −0.0034 (16) | 0.0020 (18) |
C2 | 0.0744 (18) | 0.0651 (18) | 0.0449 (14) | 0.0152 (14) | 0.0056 (13) | −0.0067 (13) |
C3 | 0.0806 (18) | 0.0570 (17) | 0.0466 (14) | 0.0229 (14) | 0.0137 (13) | 0.0045 (12) |
C4 | 0.0779 (19) | 0.0640 (18) | 0.0595 (16) | 0.0065 (14) | 0.0061 (14) | 0.0151 (14) |
C5 | 0.0708 (17) | 0.0520 (16) | 0.0507 (14) | 0.0007 (13) | 0.0035 (13) | 0.0073 (13) |
C6 | 0.099 (2) | 0.0566 (18) | 0.0563 (16) | −0.0032 (16) | 0.0208 (15) | −0.0093 (14) |
C7 | 0.099 (2) | 0.0593 (18) | 0.0631 (17) | −0.0209 (16) | 0.0091 (16) | −0.0141 (15) |
C8 | 0.0659 (17) | 0.0571 (17) | 0.0626 (17) | −0.0049 (14) | 0.0002 (13) | −0.0044 (14) |
C9 | 0.0701 (18) | 0.0569 (17) | 0.0758 (18) | 0.0007 (14) | 0.0062 (14) | −0.0168 (15) |
C10 | 0.0701 (18) | 0.0512 (17) | 0.0726 (18) | −0.0057 (13) | −0.0011 (14) | −0.0122 (14) |
C11 | 0.092 (2) | 0.105 (3) | 0.162 (4) | −0.014 (2) | 0.051 (3) | −0.037 (3) |
S1—C3 | 1.723 (3) | C4—H4B | 0.9700 |
S1—C2 | 1.725 (3) | C5—C10 | 1.371 (3) |
S2—C3 | 1.734 (3) | C5—C6 | 1.386 (4) |
S2—C4 | 1.814 (3) | C6—C7 | 1.367 (4) |
O1—C8 | 1.365 (3) | C6—H6A | 0.9300 |
O1—C11 | 1.410 (3) | C7—C8 | 1.382 (4) |
N1—C2 | 1.288 (3) | C7—H7A | 0.9300 |
N1—N2 | 1.383 (3) | C8—C9 | 1.373 (4) |
N2—C3 | 1.300 (3) | C9—C10 | 1.380 (3) |
C1—C2 | 1.488 (4) | C9—H9A | 0.9300 |
C1—H1A | 0.9600 | C10—H10A | 0.9300 |
C1—H1B | 0.9600 | C11—H11A | 0.9600 |
C1—H1C | 0.9600 | C11—H11B | 0.9600 |
C4—C5 | 1.500 (3) | C11—H11C | 0.9600 |
C4—H4A | 0.9700 | ||
C3—S1—C2 | 87.33 (13) | C10—C5—C4 | 121.5 (2) |
C3—S2—C4 | 102.99 (12) | C6—C5—C4 | 121.2 (2) |
C8—O1—C11 | 118.1 (2) | C7—C6—C5 | 121.3 (2) |
C2—N1—N2 | 113.2 (2) | C7—C6—H6A | 119.4 |
C3—N2—N1 | 112.1 (2) | C5—C6—H6A | 119.4 |
C2—C1—H1A | 109.5 | C6—C7—C8 | 120.7 (3) |
C2—C1—H1B | 109.5 | C6—C7—H7A | 119.7 |
H1A—C1—H1B | 109.5 | C8—C7—H7A | 119.7 |
C2—C1—H1C | 109.5 | O1—C8—C9 | 125.0 (2) |
H1A—C1—H1C | 109.5 | O1—C8—C7 | 116.2 (2) |
H1B—C1—H1C | 109.5 | C9—C8—C7 | 118.8 (3) |
N1—C2—C1 | 123.7 (3) | C8—C9—C10 | 119.8 (3) |
N1—C2—S1 | 113.5 (2) | C8—C9—H9A | 120.1 |
C1—C2—S1 | 122.8 (2) | C10—C9—H9A | 120.1 |
N2—C3—S1 | 113.7 (2) | C5—C10—C9 | 122.2 (2) |
N2—C3—S2 | 120.7 (2) | C5—C10—H10A | 118.9 |
S1—C3—S2 | 125.53 (16) | C9—C10—H10A | 118.9 |
C5—C4—S2 | 106.83 (17) | O1—C11—H11A | 109.5 |
C5—C4—H4A | 110.4 | O1—C11—H11B | 109.5 |
S2—C4—H4A | 110.4 | H11A—C11—H11B | 109.5 |
C5—C4—H4B | 110.4 | O1—C11—H11C | 109.5 |
S2—C4—H4B | 110.4 | H11A—C11—H11C | 109.5 |
H4A—C4—H4B | 108.6 | H11B—C11—H11C | 109.5 |
C10—C5—C6 | 117.3 (2) | ||
C2—N1—N2—C3 | 0.2 (3) | S2—C4—C5—C6 | 76.6 (3) |
N2—N1—C2—C1 | −178.9 (2) | C10—C5—C6—C7 | 0.5 (4) |
N2—N1—C2—S1 | 0.9 (3) | C4—C5—C6—C7 | −177.7 (2) |
C3—S1—C2—N1 | −1.3 (2) | C5—C6—C7—C8 | 0.4 (4) |
C3—S1—C2—C1 | 178.5 (2) | C11—O1—C8—C9 | 4.2 (4) |
N1—N2—C3—S1 | −1.3 (3) | C11—O1—C8—C7 | −176.3 (3) |
N1—N2—C3—S2 | 178.12 (18) | C6—C7—C8—O1 | 179.1 (2) |
C2—S1—C3—N2 | 1.5 (2) | C6—C7—C8—C9 | −1.4 (4) |
C2—S1—C3—S2 | −177.88 (18) | O1—C8—C9—C10 | −179.1 (3) |
C4—S2—C3—N2 | −171.8 (2) | C7—C8—C9—C10 | 1.5 (4) |
C4—S2—C3—S1 | 7.5 (2) | C6—C5—C10—C9 | −0.4 (4) |
C3—S2—C4—C5 | 172.25 (18) | C4—C5—C10—C9 | 177.8 (2) |
S2—C4—C5—C10 | −101.5 (3) | C8—C9—C10—C5 | −0.6 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1B···N1i | 0.96 | 2.59 | 3.532 (4) | 164 |
Symmetry code: (i) x, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C11H12N2OS2 |
Mr | 252.35 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 14.7765 (4), 8.6916 (3), 9.7339 (3) |
β (°) | 96.477 (1) |
V (Å3) | 1242.16 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.41 |
Crystal size (mm) | 0.25 × 0.19 × 0.03 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.907, 0.987 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11429, 2828, 1660 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.118, 1.02 |
No. of reflections | 2828 |
No. of parameters | 147 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.23, −0.19 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1B···N1i | 0.96 | 2.59 | 3.532 (4) | 164 |
Symmetry code: (i) x, −y+1/2, z+1/2. |
Acknowledgements
AMI is thankful to the Director of the National Institute of Technology for providing research facilities and also thanks the Board for Research in Nuclear Sciences, Department of Atomic Energy, Government of India, for the Young Scientist award. SC thanks the Prince of Songkla University for generous support through the Crystal Materials Research Unit. The authors also thank Universiti Sains Malaysia for the Research University grant No. 1001/PFIZIK/811160.
References
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Thiadiazole are a class of heterocyclic compounds having a five membered ring. They occur in nature and are predominant among all types of pharmaceuticals, agrochemicals and veterinary products (El-Sabbagh et al., 2009). The amino and mercapto groups in thiadiazole are readily-accessible nucleophilic centers. 1,3,4-Thiadiazole exhibit a wide spectrum of biological activities (Bernard et al., 1985). Due to the presence of the –N—C—S moiety (Kalluraya et al., 2004), they are found to be used as antibacterial, antimicrobial and anti-inflammatory agents (Chandrakantha et al., 2010). Antibacterial and antifungal (Isloor et al., 2010) activities of the azoles are most widely studied and azoles are also used as antimicrobial agents. Herein we report the crystal structure of the title 1,3,4-thiadiazole derivative, (I).
The molecule of (I) (Fig. 1) is twisted with a dihedral angle between the 1,3,4-thiadiazole and benzene rings being 83.63 (12)°. Atoms C3, S2, C4 and C5 lie nearly on the same plane with r.m.s. 0.0517 (5) Å and the torsion angle C3–S2–C4–C5 = 172.25 (18)°. The mean plane through C3/S2/C4/C5 makes the dihedral angles of 9.02 (15) and 75.92 (16)° with the 1,3,4-thiadiazole and benzene rings, respectively. The methoxy group is slightly deviated with respect to the attached benzene ring with the torsion angle C11–O1–C8–C9 = 4.2 (4)°. The bond distances are of normal values (Allen et al., 1987) and are comparable with the related structure (Wang et al., 2010).
In the crystal packing (Fig. 2), the molecules are linked by C1—H1B···N1 weak interactions (Table 1) and stacked along the c axis. S···N [3.340 (2) Å] short contacts (symmetry codes: x, 1/2 - y, 1/2 + z and x, 1/2 - y, -1/2 + z) are presented in the crystal.