organic compounds
N-[4-Cyano-3-(trifluoromethyl)phenyl]-2-methoxybenzamide
aDepartment of Biotechnology, Sri Jayachamarajendra College of Engineering, Mysore 570 006, India, bDepartment of Studies in Physics, Manasagangotri, University of Mysore, Mysore 570 006, India, and cDepartment of Studies in Chemistry, Manasagangotri, University of Mysore, Mysore 570 006, India
*Correspondence e-mail: rangappaks@chemistry.uni-mysore.ac.in
In the title compound, C16H11F3N2O2, the carboxamide group connecting the two aromatic rings is in a syn-periplanar configuration; the molecule is non-planar; the dihedral angle between the two aromatic rings is 13.95 (18)°. Intramolecular N—H⋯O and C—H⋯O hydrogen bonds occur. In the crystal, molecules are linked by intermolecular C—H⋯O hydrogen bonds.
Related literature
For nucleosome, a repeat unit of chromatin, see: Luger & Richmond (1998). For the biological activity of substituted amide derivatives, see: Bylov et al. (1999); Gududuru et al. (2004). For the preparation of the title compound, see: Mantelingu et al. (2007). For a related structure, see: Saeed et al. (2010).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: XPRESS (MacScience, 2002); cell SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009) and ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536810050269/jh2220sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810050269/jh2220Isup2.hkl
N-(4-Cyano-3-(trifluoromethyl)phenyl)-2-methoxybenzamide was synthesized as per the procedure reported in the literature (Mantelingu et al. 2007) earlier. The final product was obtained by recrystallization using methonol as a solvent. Slow evaporation of the solvent yielded colorless crystals after five days.
Nucleosome, a repeat unit of chromatin is made up of an octameric histone core, bearing two copies of H2A, H2B, H3 and H4 with 145–147 bp DNA wrapped around the central domain (Luger & Richmond, 1998). Several chromatin modifiers are reponsible for adding different post-translational marks like acetylation, methylation,
and others on N-terminal histone tails and for dictating the degree of genomic compaction. Histone acetyltransferases add the acetyl group on the specific lysine of histone H3 and H4 N-terminal, and these signatures increase the accessibility of the underlying chromatin at specific genes or over vast regions of the genome. Compounds comprising an amide bond as backbone have a wide range of biological activities. Among the natural and synthetic substituted amide derivatives, there are compounds possessing anti-proliferative (Gududuru et al. 2004), anti-viral, antimalarial, general anesthetics, anti-inflammatory (Bylov et al. 1999) and anti-microbial properties. In continuation of our research on benzamides, we have synthesized the title compound by the condenstation reaction and herein we report the single X-ray of N-(4-cyano-3-(trifluoromethyl)phenyl)-2-methoxybemzamide.A perspective view of the title compound is shown in Fig. 1. The carboxamide group connecting the two aromatic rings is in syn-periplanar-configuration. This is indicated by the torsion angle value of -7.6 (5)° about the atoms C6—N7—C8—O17. The two aromatic rings are out of plane with the dihedral angle value of 13.95 (18)° between the least squares planes of the rings. This value is very low when compare to the value of 57.69 (3)° (Saeed et al. 2010) reported earlier. This can be understood in terms of the different substituents on the phenyl ring. The CN triple bond is affected by the π-delocalization which is evident from the value 0.854 (6)Å for C22—N23. The methoxy group attached to one of the aromatic ring lies within the plane of the ring and can be oriented in conformation. This is confirmed by the torsion angle value of 179.1 (3)° about the atoms C9—C10—O15—C16. The geometry around the C8 atom of the keto group is distorted trigonal as indicated by the bond angles of 120.6 (3)°, 122.4 (3)° and 117.0 (2)° for the atoms C9—C8—O17, N7—C8—O17 and C9—C8—N7, respectively. The is stabilized by intermolecular C—H···O and intramolecular N—H···O, C—H···F and C—H···O hydrogen bonds. The intermolecular hydrogen bond C4—H12···O17 has the bond length of 3.346 (4)Å and the bond angle of 165° with the symmetry code x,-y,-1/2 + z. The molecules exhibit layered stackings when viewd down the b axis as shown in Fig. 2.
For nucleosome, a repeat unit of chromatin, see: Luger & Richmond (1998). For the biological activity of substituted amide derivatives, see: Bylov et al. (1999); Gududuru et al. (2004). For the preparation of the title compound, see: Mantelingu et al. (2007). For a related structure, see: Saeed et al. (2010).
Data collection: XPRESS (MacScience, 2002); cell
SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009) and ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. A view of the title compound, with 50% probability displacement ellipsoids. | |
Fig. 2. Packing diagram of the molecule viewed down the b axis. The dashed lines represents the hydrogen bonds. |
C16H11F3N2O2 | Z = 8 |
Mr = 320.27 | F(000) = 1312 |
Monoclinic, C2/c | Dx = 1.458 Mg m−3 |
Hall symbol: -C 2yc | Mo Kα radiation, λ = 0.71073 Å |
a = 15.117 (2) Å | µ = 0.12 mm−1 |
b = 13.907 (2) Å | T = 293 K |
c = 14.5410 (11) Å | Block, colorless |
β = 107.360 (8)° | 0.30 × 0.27 × 0.25 mm |
V = 2917.7 (6) Å3 |
MacScience DIPLabo 32001 diffractometer | 1623 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.016 |
Graphite monochromator | θmax = 23.3°, θmin = 2.3° |
Detector resolution: 10.0 pixels mm-1 | h = −16→16 |
ω scans | k = −15→14 |
3420 measured reflections | l = −14→14 |
1985 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.060 | H-atom parameters constrained |
wR(F2) = 0.206 | w = 1/[σ2(Fo2) + (0.1344P)2 + 1.7982P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.003 |
1985 reflections | Δρmax = 0.30 e Å−3 |
209 parameters | Δρmin = −0.21 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.006 (3) |
C16H11F3N2O2 | V = 2917.7 (6) Å3 |
Mr = 320.27 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 15.117 (2) Å | µ = 0.12 mm−1 |
b = 13.907 (2) Å | T = 293 K |
c = 14.5410 (11) Å | 0.30 × 0.27 × 0.25 mm |
β = 107.360 (8)° |
MacScience DIPLabo 32001 diffractometer | 1623 reflections with I > 2σ(I) |
3420 measured reflections | Rint = 0.016 |
1985 independent reflections | θmax = 23.3° |
R[F2 > 2σ(F2)] = 0.060 | 0 restraints |
wR(F2) = 0.206 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.30 e Å−3 |
1985 reflections | Δρmin = −0.21 e Å−3 |
209 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F19 | 0.08492 (17) | −0.25311 (16) | 0.34995 (19) | 0.1107 (10) | |
F20 | 0.22717 (16) | −0.24074 (17) | 0.37355 (18) | 0.1129 (10) | |
F21 | 0.1596 (3) | −0.14673 (16) | 0.44676 (16) | 0.1520 (15) | |
O15 | 0.08614 (17) | 0.31412 (17) | 0.15351 (18) | 0.0881 (10) | |
O17 | 0.1218 (2) | 0.15110 (16) | 0.39923 (17) | 0.0913 (10) | |
N7 | 0.11310 (17) | 0.14525 (17) | 0.24161 (18) | 0.0674 (9) | |
N23 | 0.1364 (3) | −0.3157 (4) | 0.1502 (3) | 0.1214 (19) | |
C1 | 0.1294 (2) | −0.0219 (2) | 0.3009 (2) | 0.0643 (10) | |
C2 | 0.13454 (19) | −0.1182 (2) | 0.2817 (2) | 0.0619 (10) | |
C3 | 0.1244 (2) | −0.1500 (2) | 0.1890 (2) | 0.0675 (11) | |
C4 | 0.1073 (2) | −0.0828 (2) | 0.1149 (2) | 0.0765 (11) | |
C5 | 0.1021 (2) | 0.0126 (2) | 0.1332 (2) | 0.0734 (12) | |
C6 | 0.11416 (19) | 0.0455 (2) | 0.2273 (2) | 0.0626 (11) | |
C8 | 0.1214 (2) | 0.1927 (2) | 0.3251 (2) | 0.0666 (11) | |
C9 | 0.1314 (2) | 0.2998 (2) | 0.3241 (2) | 0.0698 (11) | |
C10 | 0.1149 (2) | 0.3588 (2) | 0.2417 (3) | 0.0763 (14) | |
C11 | 0.1272 (3) | 0.4564 (3) | 0.2528 (4) | 0.0975 (18) | |
C12 | 0.1562 (3) | 0.4967 (3) | 0.3418 (4) | 0.113 (2) | |
C13 | 0.1740 (3) | 0.4411 (3) | 0.4235 (4) | 0.1078 (19) | |
C14 | 0.1608 (3) | 0.3431 (2) | 0.4140 (3) | 0.0852 (14) | |
C16 | 0.0674 (3) | 0.3715 (3) | 0.0683 (3) | 0.1134 (19) | |
C18 | 0.1520 (3) | −0.1878 (2) | 0.3628 (2) | 0.0781 (14) | |
C22 | 0.1326 (3) | −0.2568 (2) | 0.1652 (3) | 0.0644 (12) | |
H6 | 0.10490 | 0.18100 | 0.18320 | 0.0810* | |
H9 | 0.09010 | 0.05830 | 0.08150 | 0.0880* | |
H12 | 0.09920 | −0.10360 | 0.05000 | 0.0910* | |
H15 | 0.13630 | −0.00070 | 0.36550 | 0.0770* | |
H16 | 0.11520 | 0.49610 | 0.19650 | 0.1170* | |
H19 | 0.17200 | 0.30390 | 0.47070 | 0.1020* | |
H21 | 0.19460 | 0.46840 | 0.48700 | 0.1290* | |
H22A | 0.04740 | 0.33080 | 0.01260 | 0.1360* | |
H22B | 0.12280 | 0.40480 | 0.06770 | 0.1360* | |
H22C | 0.01970 | 0.41740 | 0.06730 | 0.1360* | |
H23 | 0.16450 | 0.56510 | 0.34670 | 0.1360* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F19 | 0.1193 (18) | 0.0972 (16) | 0.124 (2) | −0.0052 (13) | 0.0490 (14) | 0.0376 (13) |
F20 | 0.1016 (17) | 0.1068 (17) | 0.1230 (19) | 0.0267 (13) | 0.0224 (13) | 0.0395 (13) |
F21 | 0.310 (4) | 0.0802 (16) | 0.0651 (16) | 0.0290 (19) | 0.0550 (19) | 0.0146 (10) |
O15 | 0.1043 (18) | 0.0797 (16) | 0.0830 (18) | 0.0090 (13) | 0.0323 (13) | 0.0272 (12) |
O17 | 0.150 (2) | 0.0677 (15) | 0.0623 (15) | −0.0031 (13) | 0.0410 (13) | 0.0051 (10) |
N7 | 0.0877 (18) | 0.0593 (15) | 0.0600 (16) | 0.0034 (12) | 0.0296 (12) | 0.0067 (11) |
N23 | 0.123 (3) | 0.149 (4) | 0.097 (3) | −0.009 (3) | 0.040 (2) | 0.025 (3) |
C1 | 0.0758 (19) | 0.0645 (18) | 0.0535 (17) | 0.0015 (14) | 0.0209 (13) | 0.0019 (13) |
C2 | 0.0686 (18) | 0.0611 (17) | 0.0582 (18) | 0.0017 (13) | 0.0222 (13) | 0.0030 (13) |
C3 | 0.0692 (18) | 0.0673 (19) | 0.069 (2) | −0.0013 (14) | 0.0253 (14) | −0.0025 (14) |
C4 | 0.102 (2) | 0.079 (2) | 0.0536 (19) | −0.0012 (17) | 0.0312 (15) | −0.0052 (14) |
C5 | 0.096 (2) | 0.070 (2) | 0.059 (2) | 0.0031 (16) | 0.0303 (15) | 0.0081 (14) |
C6 | 0.0683 (18) | 0.0667 (19) | 0.0567 (18) | 0.0014 (13) | 0.0245 (13) | 0.0052 (13) |
C8 | 0.0740 (19) | 0.0647 (19) | 0.065 (2) | 0.0022 (14) | 0.0268 (14) | 0.0041 (14) |
C9 | 0.0688 (18) | 0.0625 (19) | 0.085 (2) | 0.0055 (14) | 0.0334 (16) | 0.0040 (15) |
C10 | 0.069 (2) | 0.0632 (19) | 0.104 (3) | 0.0077 (14) | 0.0368 (18) | 0.0155 (17) |
C11 | 0.103 (3) | 0.066 (2) | 0.132 (4) | 0.0093 (19) | 0.048 (2) | 0.020 (2) |
C12 | 0.116 (3) | 0.058 (2) | 0.175 (5) | 0.005 (2) | 0.057 (3) | 0.001 (3) |
C13 | 0.120 (3) | 0.075 (3) | 0.133 (4) | 0.000 (2) | 0.045 (3) | −0.022 (2) |
C14 | 0.096 (2) | 0.068 (2) | 0.096 (3) | 0.0034 (17) | 0.0353 (19) | −0.0104 (18) |
C16 | 0.133 (4) | 0.114 (3) | 0.098 (3) | 0.021 (3) | 0.042 (2) | 0.051 (2) |
C18 | 0.099 (3) | 0.0649 (19) | 0.073 (2) | 0.0073 (19) | 0.0296 (17) | 0.0068 (15) |
C22 | 0.077 (2) | 0.060 (2) | 0.062 (2) | −0.0050 (18) | 0.0294 (15) | −0.0145 (17) |
F19—C18 | 1.332 (5) | C8—C9 | 1.498 (4) |
F20—C18 | 1.324 (5) | C9—C14 | 1.387 (5) |
F21—C18 | 1.321 (4) | C9—C10 | 1.412 (5) |
O15—C10 | 1.374 (5) | C10—C11 | 1.373 (5) |
O15—C16 | 1.429 (5) | C11—C12 | 1.357 (8) |
O17—C8 | 1.222 (4) | C12—C13 | 1.375 (7) |
N7—C6 | 1.404 (4) | C13—C14 | 1.378 (5) |
N7—C8 | 1.354 (4) | C1—H15 | 0.9600 |
N23—C22 | 0.854 (6) | C4—H12 | 0.9600 |
N7—H6 | 0.9600 | C5—H9 | 0.9600 |
C1—C6 | 1.389 (4) | C11—H16 | 0.9600 |
C1—C2 | 1.375 (4) | C12—H23 | 0.9600 |
C2—C18 | 1.487 (4) | C13—H21 | 0.9600 |
C2—C3 | 1.383 (4) | C14—H19 | 0.9600 |
C3—C4 | 1.391 (4) | C16—H22A | 0.9600 |
C3—C22 | 1.538 (4) | C16—H22B | 0.9600 |
C4—C5 | 1.360 (4) | C16—H22C | 0.9600 |
C5—C6 | 1.402 (4) | ||
F19···C22 | 2.982 (5) | C22···F20 | 2.948 (5) |
F19···C3i | 3.365 (4) | C22···F19i | 3.230 (5) |
F19···C22i | 3.230 (5) | C22···F19 | 2.982 (5) |
F20···C16ii | 3.351 (5) | C8···H15 | 2.7500 |
F20···O15ii | 3.060 (4) | C10···H6 | 2.6000 |
F20···C22 | 2.948 (5) | C11···H22C | 2.7600 |
F20···F21iii | 3.088 (4) | C11···H22B | 2.7700 |
F21···F20iii | 3.088 (4) | C13···H22Ci | 2.9900 |
F19···H22Aiv | 2.8100 | C14···H22Ci | 3.0000 |
F19···H23v | 2.8100 | C16···H16 | 2.4900 |
F20···H23v | 2.8500 | C16···H6 | 3.0900 |
F21···H15 | 2.3200 | H6···O15 | 1.9000 |
F21···H9iv | 2.7700 | H6···C10 | 2.6000 |
O15···N7 | 2.648 (3) | H6···C16 | 3.0900 |
O15···C9i | 3.406 (4) | H6···H9 | 2.2300 |
O15···F20vi | 3.060 (4) | H9···H6 | 2.2300 |
O17···C1 | 2.819 (4) | H9···F21vii | 2.7700 |
O17···C4iv | 3.346 (4) | H12···O17vii | 2.4100 |
O15···H6 | 1.9000 | H15···F21 | 2.3200 |
O17···H15 | 2.1900 | H15···O17 | 2.1900 |
O17···H19 | 2.3900 | H15···C8 | 2.7500 |
O17···H12iv | 2.4100 | H16···N23viii | 2.7400 |
N7···O15 | 2.648 (3) | H16···C16 | 2.4900 |
N7···C8i | 3.448 (4) | H16···H22B | 2.2900 |
N23···H16v | 2.7400 | H16···H22C | 2.2800 |
N23···H19vii | 2.8200 | H19···O17 | 2.3900 |
C1···O17 | 2.819 (4) | H19···N23iv | 2.8200 |
C3···F19i | 3.365 (4) | H21···H22Bix | 2.5300 |
C4···O17vii | 3.346 (4) | H22A···F19vii | 2.8100 |
C4···C13ii | 3.529 (6) | H22B···C11 | 2.7700 |
C5···C12ii | 3.569 (6) | H22B···H16 | 2.2900 |
C8···N7i | 3.448 (4) | H22B···H21x | 2.5300 |
C9···O15i | 3.406 (4) | H22C···C11 | 2.7600 |
C10···C10i | 3.553 (5) | H22C···H16 | 2.2800 |
C12···C5vi | 3.569 (6) | H22C···C13i | 2.9900 |
C13···C4vi | 3.529 (6) | H22C···C14i | 3.0000 |
C14···C16i | 3.557 (7) | H23···F19viii | 2.8100 |
C16···C14i | 3.557 (7) | H23···F20viii | 2.8500 |
C16···F20vi | 3.351 (5) | ||
C10—O15—C16 | 118.8 (3) | C9—C14—C13 | 121.3 (4) |
C6—N7—C8 | 127.8 (2) | F19—C18—C2 | 112.6 (3) |
C6—N7—H6 | 113.00 | F20—C18—F21 | 107.2 (3) |
C8—N7—H6 | 120.00 | F20—C18—C2 | 113.5 (3) |
C2—C1—C6 | 120.5 (3) | F21—C18—C2 | 113.4 (2) |
C3—C2—C18 | 120.4 (3) | F19—C18—F20 | 103.2 (2) |
C1—C2—C18 | 118.7 (2) | F19—C18—F21 | 106.1 (3) |
C1—C2—C3 | 120.9 (3) | N23—C22—C3 | 178.3 (5) |
C2—C3—C22 | 122.4 (3) | C2—C1—H15 | 120.00 |
C4—C3—C22 | 118.9 (3) | C6—C1—H15 | 119.00 |
C2—C3—C4 | 118.8 (3) | C3—C4—H12 | 120.00 |
C3—C4—C5 | 120.8 (3) | C5—C4—H12 | 119.00 |
C4—C5—C6 | 120.7 (3) | C4—C5—H9 | 120.00 |
N7—C6—C1 | 124.0 (3) | C6—C5—H9 | 119.00 |
C1—C6—C5 | 118.4 (3) | C10—C11—H16 | 119.00 |
N7—C6—C5 | 117.6 (2) | C12—C11—H16 | 120.00 |
O17—C8—C9 | 120.4 (3) | C11—C12—H23 | 119.00 |
O17—C8—N7 | 122.3 (3) | C13—C12—H23 | 120.00 |
N7—C8—C9 | 117.3 (2) | C12—C13—H21 | 122.00 |
C8—C9—C14 | 115.3 (3) | C14—C13—H21 | 119.00 |
C8—C9—C10 | 126.4 (3) | C9—C14—H19 | 119.00 |
C10—C9—C14 | 118.3 (3) | C13—C14—H19 | 119.00 |
C9—C10—C11 | 119.4 (4) | O15—C16—H22A | 109.00 |
O15—C10—C11 | 123.4 (4) | O15—C16—H22B | 109.00 |
O15—C10—C9 | 117.1 (2) | O15—C16—H22C | 110.00 |
C10—C11—C12 | 120.9 (5) | H22A—C16—H22B | 109.00 |
C11—C12—C13 | 121.1 (4) | H22A—C16—H22C | 109.00 |
C12—C13—C14 | 119.0 (5) | H22B—C16—H22C | 109.00 |
C16—O15—C10—C11 | −0.3 (5) | C22—C3—C4—C5 | −178.2 (3) |
C16—O15—C10—C9 | 179.1 (3) | C2—C3—C4—C5 | 1.1 (5) |
C8—N7—C6—C1 | −3.7 (5) | C3—C4—C5—C6 | 0.2 (5) |
C6—N7—C8—C9 | 171.7 (3) | C4—C5—C6—N7 | 176.5 (3) |
C8—N7—C6—C5 | 178.5 (3) | C4—C5—C6—C1 | −1.5 (5) |
C6—N7—C8—O17 | −7.6 (5) | N7—C8—C9—C10 | 13.5 (5) |
C6—C1—C2—C18 | 179.3 (3) | O17—C8—C9—C10 | −167.2 (3) |
C6—C1—C2—C3 | −0.2 (5) | O17—C8—C9—C14 | 13.6 (5) |
C2—C1—C6—N7 | −176.3 (3) | N7—C8—C9—C14 | −165.8 (3) |
C2—C1—C6—C5 | 1.5 (5) | C8—C9—C10—C11 | 180.0 (4) |
C1—C2—C18—F21 | 0.8 (5) | C14—C9—C10—O15 | 179.8 (3) |
C1—C2—C18—F19 | 121.3 (3) | C8—C9—C14—C13 | 179.2 (4) |
C1—C2—C18—F20 | −121.9 (3) | C10—C9—C14—C13 | −0.2 (6) |
C3—C2—C18—F21 | −179.7 (4) | C14—C9—C10—C11 | −0.8 (5) |
C18—C2—C3—C4 | 179.4 (3) | C8—C9—C10—O15 | 0.5 (5) |
C18—C2—C3—C22 | −1.4 (5) | O15—C10—C11—C12 | −179.7 (4) |
C3—C2—C18—F20 | 57.6 (4) | C9—C10—C11—C12 | 0.9 (6) |
C1—C2—C3—C22 | 178.1 (3) | C10—C11—C12—C13 | −0.1 (7) |
C3—C2—C18—F19 | −59.2 (4) | C11—C12—C13—C14 | −0.8 (7) |
C1—C2—C3—C4 | −1.1 (5) | C12—C13—C14—C9 | 1.0 (7) |
Symmetry codes: (i) −x, y, −z+1/2; (ii) −x+1/2, y−1/2, −z+1/2; (iii) −x+1/2, −y−1/2, −z+1; (iv) x, −y, z+1/2; (v) x, y−1, z; (vi) −x+1/2, y+1/2, −z+1/2; (vii) x, −y, z−1/2; (viii) x, y+1, z; (ix) x, −y+1, z+1/2; (x) x, −y+1, z−1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H6···O15 | 0.96 | 1.90 | 2.648 (3) | 133 |
C4—H12···O17vii | 0.96 | 2.41 | 3.346 (4) | 165 |
C1—H15···F21 | 0.96 | 2.32 | 2.673 (4) | 101 |
C1—H15···O17 | 0.96 | 2.19 | 2.819 (4) | 122 |
C14—H19···O17 | 0.96 | 2.39 | 2.729 (4) | 100 |
Symmetry code: (vii) x, −y, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C16H11F3N2O2 |
Mr | 320.27 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 15.117 (2), 13.907 (2), 14.5410 (11) |
β (°) | 107.360 (8) |
V (Å3) | 2917.7 (6) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.30 × 0.27 × 0.25 |
Data collection | |
Diffractometer | MacScience DIPLabo 32001 |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3420, 1985, 1623 |
Rint | 0.016 |
θmax (°) | 23.3 |
(sin θ/λ)max (Å−1) | 0.555 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.060, 0.206, 1.03 |
No. of reflections | 1985 |
No. of parameters | 209 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.21 |
Computer programs: XPRESS (MacScience, 2002), SCALEPACK (Otwinowski & Minor, 1997), DENZO (Otwinowski & Minor, 1997) and SCALEPACK, SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009) and ORTEPII (Johnson, 1976).
F19—C18 | 1.332 (5) | O17—C8 | 1.222 (4) |
F20—C18 | 1.324 (5) | N7—C6 | 1.404 (4) |
F21—C18 | 1.321 (4) | N7—C8 | 1.354 (4) |
O15—C10 | 1.374 (5) | N23—C22 | 0.854 (6) |
O15—C16 | 1.429 (5) | ||
C10—O15—C16 | 118.8 (3) | O15—C10—C9 | 117.1 (2) |
C6—N7—C8 | 127.8 (2) | F19—C18—C2 | 112.6 (3) |
N7—C6—C1 | 124.0 (3) | F20—C18—F21 | 107.2 (3) |
N7—C6—C5 | 117.6 (2) | F20—C18—C2 | 113.5 (3) |
O17—C8—C9 | 120.4 (3) | F21—C18—C2 | 113.4 (2) |
O17—C8—N7 | 122.3 (3) | F19—C18—F20 | 103.2 (2) |
N7—C8—C9 | 117.3 (2) | F19—C18—F21 | 106.1 (3) |
O15—C10—C11 | 123.4 (4) | N23—C22—C3 | 178.3 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H6···O15 | 0.96 | 1.90 | 2.648 (3) | 133 |
C4—H12···O17i | 0.96 | 2.41 | 3.346 (4) | 165 |
C1—H15···O17 | 0.96 | 2.19 | 2.819 (4) | 122 |
Symmetry code: (i) x, −y, z−1/2. |
Acknowledgements
The authors are grateful to the DST and the Government of India (project SP/I2/FOO/93) and the University of Mysore for financial assistance. HRM would like to thank the UGC–BRS and the University of Mysore for the award of a fellowship. SNS is grateful to the University Grants Commission (UGC), Government of India, for financial support under the major research project [grant No. 38–220/2009 (SR)]. SNS also expresses his sincere gratitude to J. S. S. Mahavidyapeetha for encouragement of this research work.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Nucleosome, a repeat unit of chromatin is made up of an octameric histone core, bearing two copies of H2A, H2B, H3 and H4 with 145–147 bp DNA wrapped around the central domain (Luger & Richmond, 1998). Several chromatin modifiers are reponsible for adding different post-translational marks like acetylation, methylation, phosphorylation and others on N-terminal histone tails and for dictating the degree of genomic compaction. Histone acetyltransferases add the acetyl group on the specific lysine of histone H3 and H4 N-terminal, and these signatures increase the accessibility of the underlying chromatin at specific genes or over vast regions of the genome. Compounds comprising an amide bond as backbone have a wide range of biological activities. Among the natural and synthetic substituted amide derivatives, there are compounds possessing anti-proliferative (Gududuru et al. 2004), anti-viral, antimalarial, general anesthetics, anti-inflammatory (Bylov et al. 1999) and anti-microbial properties. In continuation of our research on benzamides, we have synthesized the title compound by the condenstation reaction and herein we report the single X-ray crystal structure of N-(4-cyano-3-(trifluoromethyl)phenyl)-2-methoxybemzamide.
A perspective view of the title compound is shown in Fig. 1. The carboxamide group connecting the two aromatic rings is in syn-periplanar-configuration. This is indicated by the torsion angle value of -7.6 (5)° about the atoms C6—N7—C8—O17. The two aromatic rings are out of plane with the dihedral angle value of 13.95 (18)° between the least squares planes of the rings. This value is very low when compare to the value of 57.69 (3)° (Saeed et al. 2010) reported earlier. This can be understood in terms of the different substituents on the phenyl ring. The CN triple bond is affected by the π-delocalization which is evident from the value 0.854 (6)Å for C22—N23. The methoxy group attached to one of the aromatic ring lies within the plane of the ring and can be oriented in trans conformation. This is confirmed by the torsion angle value of 179.1 (3)° about the atoms C9—C10—O15—C16. The geometry around the C8 atom of the keto group is distorted trigonal as indicated by the bond angles of 120.6 (3)°, 122.4 (3)° and 117.0 (2)° for the atoms C9—C8—O17, N7—C8—O17 and C9—C8—N7, respectively. The crystal structure is stabilized by intermolecular C—H···O and intramolecular N—H···O, C—H···F and C—H···O hydrogen bonds. The intermolecular hydrogen bond C4—H12···O17 has the bond length of 3.346 (4)Å and the bond angle of 165° with the symmetry code x,-y,-1/2 + z. The molecules exhibit layered stackings when viewd down the b axis as shown in Fig. 2.