organic compounds
Piperazine-1,4-diium bis(hydrogen 2-propyl-1H-imidazole-4,5-dicarboxylate) monohydrate
aSchool of Chemistry and Biology Engineering, Taiyuan University of Science and Technology, Taiyuan 030021, People's Republic of China, and bCollege of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, Gansu 730000, People's Republic of China
*Correspondence e-mail: zqgao2008@163.com
The title compound, C4H12N22+·2C8H9N2O4−·H2O, is a hydrated proton-transfer compound obtained from 2-propyl-1H-imidazole-4,5-dicarboxylic acid and piperazine. The contains one half-cation, one anion and half a water molecule. There is a centre of inversion at the centre of the cation ring and the water molecule O atom lies on a twofold rotation axis. In the crystal, intermolecular N—H⋯O and N—H⋯N hydrogen bonds help to construct a three-dimensional framework. Almost symmetrical, intramolecular O—H⋯O interactions are also observed.
Related literature
For the structures and properties of proton-transfer compounds, see: Aghabozorg et al. (2006). For the use of multi-carboxylate heterocyclic acids and piperazine in coordination chemistry, see: Murugavel et al. (2009); Sheshmani et al. (2006) and for piperazinium structures, see: Murugavel et al. (2009); Sheshmani et al. (2007). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536810049822/jh2238sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810049822/jh2238Isup2.hkl
To a solution of 2-propyl-1H-imidazole-4,5-dicarboxylic acid (0.100 g, 0.5 mmol) in water (5 ml) was added an aqueous solution (5 ml) of piperazine (0.089 g, 0.5 mmol). The reactants were sealed in a 25-ml Teflon-lined, stainless-steel Parr bomb. The bomb was heated at 433 K for 3 days. The cool solution yielded single crystals in ca 70% yield. Anal. Calcd for C10H16N3O4.5: C, 47.99; H, 6.44; N, 16.79. Found: C, 47.61; H, 6.77; N, 16.42.
The free water H atoms attached to oxygen atoms were placed at calculated positions and refined with the riding model, considering the position of oxygen atoms and the quantity of H atoms. The H atoms were placed in geometrically idealized positions, withN–H = 0.86–0.90 Å and C–H = 0.93 Å, and constrained to ride on their respective parent atoms, with Uiso(H) = 1.2 Ueq.
t;text-indent:12.0 pt;mso-char-indent-count: 1.0;line-height:200%'>In the past decades, much attention has been focused on the design and synthesis of proton-transfer compounds, owing to their importance in physics, chemistry and biochemistry (Aghabozorg et al., 2006; Allen et al., 1987). Many multi-carboxylate or heterocyclic acids and piperazine are used for this purpose (Murugavel et al., 2009; Sheshmani et al., 2006). In order to extend the investigation, we have prepared the title compound, (I), and report its
here.As shown in Fig.1, The
contains one half-cation, one anion and half a water molecule. There is a centre of inversion at the centre of the cation ring and one water molecule lies on a twofold rotation axis. The organic piperazinium dication lies at an inversion centre and adopts a typical chair geometry with normal valence bond lengths (Murugavel et al., 2009) and angles, as observed in the related structures (Sheshmani et al., 2007). The anionic fragment individually has two intramolecular hydrogen bonds, a O–H···O bond between adjacent carboxylate groups and a N–H···O bond between the imidazole ring and the carboxylate group (Fig. 2 and Table 1). In the intermolecular N–H···O and N–H···N hydrogen bonds play an important role in the construction of the three-dimensional framework (Fig. 3).For the structures and properties of proton-transfer compounds, see: Aghabozorg et al. (2006). For the use of multi-carboxylate heterocyclic acids and piperazine in coordination chemistry, see: Murugavel et al. (2009); Sheshmani et al. (2006) and for piperazinium structures, see: Murugavel et al. (2009); Sheshmani et al. (2007). For bond-length data, see: Allen et al. (1987).
Data collection: SMART (Bruker, 1997); cell
SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C4H12N22+·2C8H9N2O4−·H2O | F(000) = 1064 |
Mr = 500.52 | Dx = 1.302 Mg m−3 |
Monoclinic, I2/a | Mo Kα radiation, λ = 0.71073 Å |
a = 11.288 (2) Å | Cell parameters from 1047 reflections |
b = 15.965 (3) Å | θ = 0.0–0.0° |
c = 14.449 (4) Å | µ = 0.10 mm−1 |
β = 101.296 (12)° | T = 273 K |
V = 2553.6 (10) Å3 | Block, colorless |
Z = 4 | 0.20 × 0.18 × 0.16 mm |
Bruker SMART CCD area-detector diffractometer | 2066 independent reflections |
Radiation source: fine-focus sealed tube | 1499 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.039 |
φ and ω scans | θmax = 24.3°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | h = −10→13 |
Tmin = 0.980, Tmax = 0.984 | k = −18→17 |
6239 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.136 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0619P)2 + 1.5738P] where P = (Fo2 + 2Fc2)/3 |
2066 reflections | (Δ/σ)max = 0.001 |
165 parameters | Δρmax = 0.43 e Å−3 |
13 restraints | Δρmin = −0.21 e Å−3 |
C4H12N22+·2C8H9N2O4−·H2O | V = 2553.6 (10) Å3 |
Mr = 500.52 | Z = 4 |
Monoclinic, I2/a | Mo Kα radiation |
a = 11.288 (2) Å | µ = 0.10 mm−1 |
b = 15.965 (3) Å | T = 273 K |
c = 14.449 (4) Å | 0.20 × 0.18 × 0.16 mm |
β = 101.296 (12)° |
Bruker SMART CCD area-detector diffractometer | 2066 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | 1499 reflections with I > 2σ(I) |
Tmin = 0.980, Tmax = 0.984 | Rint = 0.039 |
6239 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 13 restraints |
wR(F2) = 0.136 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.43 e Å−3 |
2066 reflections | Δρmin = −0.21 e Å−3 |
165 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.0849 (2) | 0.71261 (16) | 0.09103 (17) | 0.0422 (6) | |
C2 | 0.1935 (2) | 0.67934 (14) | 0.15314 (16) | 0.0364 (6) | |
C3 | 0.2144 (2) | 0.64165 (14) | 0.24013 (16) | 0.0363 (6) | |
C4 | 0.1292 (2) | 0.62027 (16) | 0.30292 (18) | 0.0424 (6) | |
C5 | 0.5184 (2) | 0.6485 (2) | 0.1969 (2) | 0.0611 (8) | |
H5A | 0.5649 | 0.6478 | 0.2609 | 0.073* | |
H5B | 0.5409 | 0.6984 | 0.1661 | 0.073* | |
C6 | 0.5505 (3) | 0.5713 (3) | 0.1446 (4) | 0.1233 (18) | |
H6A | 0.5028 | 0.5710 | 0.0810 | 0.148* | |
H6B | 0.5308 | 0.5212 | 0.1765 | 0.148* | |
C7 | 0.6847 (4) | 0.5704 (3) | 0.1403 (5) | 0.171 (3) | |
H7A | 0.7039 | 0.6195 | 0.1078 | 0.205* | |
H7B | 0.7024 | 0.5213 | 0.1072 | 0.205* | |
H7C | 0.7320 | 0.5699 | 0.2032 | 0.205* | |
C8 | 0.5499 (2) | 0.57768 (16) | 0.47554 (19) | 0.0483 (7) | |
H8A | 0.5643 | 0.6370 | 0.4872 | 0.058* | |
H8B | 0.5864 | 0.5617 | 0.4227 | 0.058* | |
C9 | 0.3930 (2) | 0.47110 (16) | 0.43879 (17) | 0.0456 (7) | |
H9A | 0.4231 | 0.4509 | 0.3845 | 0.055* | |
H9B | 0.3062 | 0.4627 | 0.4267 | 0.055* | |
C12 | 0.3877 (2) | 0.65313 (16) | 0.20022 (17) | 0.0429 (6) | |
H2 | −0.004 (2) | 0.6647 (18) | 0.195 (2) | 0.103 (11)* | |
H1W | 0.8140 | 0.7443 | 0.0209 | 0.31 (5)* | |
N1 | 0.30493 (17) | 0.68560 (13) | 0.12993 (13) | 0.0410 (5) | |
H1 | 0.3196 | 0.7069 | 0.0787 | 0.049* | |
N2 | 0.33568 (18) | 0.62552 (13) | 0.26903 (14) | 0.0426 (5) | |
N3 | 0.42026 (17) | 0.56200 (13) | 0.45216 (14) | 0.0426 (5) | |
H3A | 0.3883 | 0.5897 | 0.3989 | 0.051* | |
H3B | 0.3856 | 0.5818 | 0.4988 | 0.051* | |
O1 | −0.01641 (15) | 0.70340 (13) | 0.11795 (13) | 0.0582 (6) | |
O2 | 0.09473 (15) | 0.74761 (12) | 0.01667 (12) | 0.0510 (5) | |
O3 | 0.01637 (15) | 0.63600 (13) | 0.27299 (13) | 0.0566 (5) | |
O4 | 0.16861 (16) | 0.58907 (12) | 0.38055 (12) | 0.0537 (5) | |
O5 | 0.7500 | 0.7747 (3) | 0.0000 | 0.170 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0499 (16) | 0.0430 (15) | 0.0338 (14) | 0.0040 (12) | 0.0083 (12) | −0.0025 (12) |
C2 | 0.0403 (13) | 0.0379 (14) | 0.0322 (13) | 0.0010 (10) | 0.0101 (10) | −0.0008 (10) |
C3 | 0.0388 (13) | 0.0379 (14) | 0.0331 (13) | 0.0015 (10) | 0.0092 (10) | 0.0022 (10) |
C4 | 0.0480 (15) | 0.0419 (15) | 0.0390 (15) | 0.0021 (11) | 0.0124 (12) | 0.0047 (12) |
C5 | 0.0471 (17) | 0.088 (2) | 0.0514 (17) | 0.0117 (15) | 0.0188 (14) | 0.0195 (16) |
C6 | 0.090 (3) | 0.089 (3) | 0.215 (5) | 0.042 (2) | 0.089 (3) | 0.042 (3) |
C7 | 0.130 (4) | 0.149 (5) | 0.268 (7) | 0.062 (4) | 0.126 (5) | 0.072 (5) |
C8 | 0.0438 (15) | 0.0455 (16) | 0.0572 (17) | 0.0039 (12) | 0.0138 (13) | 0.0078 (13) |
C9 | 0.0408 (14) | 0.0511 (17) | 0.0438 (16) | 0.0050 (12) | 0.0055 (11) | −0.0065 (12) |
C12 | 0.0437 (14) | 0.0530 (16) | 0.0335 (14) | 0.0049 (12) | 0.0110 (11) | 0.0054 (12) |
N1 | 0.0469 (12) | 0.0483 (13) | 0.0307 (11) | 0.0027 (10) | 0.0150 (9) | 0.0058 (9) |
N2 | 0.0437 (12) | 0.0494 (13) | 0.0366 (12) | 0.0059 (9) | 0.0127 (9) | 0.0089 (9) |
N3 | 0.0448 (12) | 0.0479 (13) | 0.0354 (11) | 0.0108 (9) | 0.0090 (9) | 0.0058 (9) |
O1 | 0.0429 (11) | 0.0824 (15) | 0.0487 (12) | 0.0088 (9) | 0.0075 (9) | 0.0143 (10) |
O2 | 0.0610 (12) | 0.0601 (12) | 0.0334 (10) | 0.0150 (9) | 0.0132 (9) | 0.0053 (8) |
O3 | 0.0427 (11) | 0.0766 (14) | 0.0527 (12) | 0.0031 (9) | 0.0146 (9) | 0.0180 (10) |
O4 | 0.0540 (11) | 0.0682 (13) | 0.0426 (11) | 0.0087 (9) | 0.0189 (9) | 0.0200 (9) |
O5 | 0.084 (3) | 0.089 (3) | 0.315 (8) | 0.000 | −0.015 (4) | 0.000 |
C1—O2 | 1.235 (3) | C7—H7C | 0.9600 |
C1—O1 | 1.286 (3) | C8—N3 | 1.458 (3) |
C1—C2 | 1.469 (3) | C8—C9i | 1.497 (3) |
C2—N1 | 1.368 (3) | C8—H8A | 0.9700 |
C2—C3 | 1.372 (3) | C8—H8B | 0.9700 |
C3—N2 | 1.375 (3) | C9—N3 | 1.488 (3) |
C3—C4 | 1.486 (3) | C9—C8i | 1.497 (3) |
C4—O4 | 1.228 (3) | C9—H9A | 0.9700 |
C4—O3 | 1.287 (3) | C9—H9B | 0.9700 |
C5—C12 | 1.487 (3) | C12—N2 | 1.325 (3) |
C5—C6 | 1.526 (5) | C12—N1 | 1.342 (3) |
C5—H5A | 0.9700 | N1—H1 | 0.8600 |
C5—H5B | 0.9700 | N3—H3A | 0.9000 |
C6—C7 | 1.528 (5) | N3—H3B | 0.9000 |
C6—H6A | 0.9700 | O1—H2 | 1.26 (3) |
C6—H6B | 0.9700 | O3—H2 | 1.19 (3) |
C7—H7A | 0.9600 | O5—H1W | 0.8739 |
C7—H7B | 0.9600 | ||
O2—C1—O1 | 123.5 (2) | H7B—C7—H7C | 109.5 |
O2—C1—C2 | 119.2 (2) | N3—C8—C9i | 110.6 (2) |
O1—C1—C2 | 117.3 (2) | N3—C8—H8A | 109.5 |
N1—C2—C3 | 104.8 (2) | C9i—C8—H8A | 109.5 |
N1—C2—C1 | 121.4 (2) | N3—C8—H8B | 109.5 |
C3—C2—C1 | 133.8 (2) | C9i—C8—H8B | 109.5 |
C2—C3—N2 | 110.1 (2) | H8A—C8—H8B | 108.1 |
C2—C3—C4 | 130.1 (2) | N3—C9—C8i | 110.8 (2) |
N2—C3—C4 | 119.8 (2) | N3—C9—H9A | 109.5 |
O4—C4—O3 | 122.9 (2) | C8i—C9—H9A | 109.5 |
O4—C4—C3 | 119.3 (2) | N3—C9—H9B | 109.5 |
O3—C4—C3 | 117.8 (2) | C8i—C9—H9B | 109.5 |
C12—C5—C6 | 112.9 (3) | H9A—C9—H9B | 108.1 |
C12—C5—H5A | 109.0 | N2—C12—N1 | 110.5 (2) |
C6—C5—H5A | 109.0 | N2—C12—C5 | 126.6 (2) |
C12—C5—H5B | 109.0 | N1—C12—C5 | 122.9 (2) |
C6—C5—H5B | 109.0 | C12—N1—C2 | 108.89 (19) |
H5A—C5—H5B | 107.8 | C12—N1—H1 | 125.6 |
C5—C6—C7 | 111.2 (4) | C2—N1—H1 | 125.6 |
C5—C6—H6A | 109.4 | C12—N2—C3 | 105.7 (2) |
C7—C6—H6A | 109.4 | C8—N3—C9 | 111.74 (18) |
C5—C6—H6B | 109.4 | C8—N3—H3A | 109.3 |
C7—C6—H6B | 109.4 | C9—N3—H3A | 109.3 |
H6A—C6—H6B | 108.0 | C8—N3—H3B | 109.3 |
C6—C7—H7A | 109.5 | C9—N3—H3B | 109.3 |
C6—C7—H7B | 109.5 | H3A—N3—H3B | 107.9 |
H7A—C7—H7B | 109.5 | C1—O1—H2 | 112.1 (11) |
C6—C7—H7C | 109.5 | C4—O3—H2 | 112.9 (12) |
H7A—C7—H7C | 109.5 |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H2···O1 | 1.19 (3) | 1.26 (3) | 2.447 (3) | 172 (3) |
O5—H1W···O1ii | 0.87 | 2.24 | 3.065 (3) | 158 |
N1—H1···O2iii | 0.86 | 1.94 | 2.773 (3) | 162 |
N3—H3A···N2 | 0.90 | 1.94 | 2.820 (3) | 165 |
N3—H3B···O4iv | 0.90 | 1.96 | 2.826 (3) | 161 |
Symmetry codes: (ii) x+1, y, z; (iii) −x+1/2, y, −z; (iv) −x+1/2, y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C4H12N22+·2C8H9N2O4−·H2O |
Mr | 500.52 |
Crystal system, space group | Monoclinic, I2/a |
Temperature (K) | 273 |
a, b, c (Å) | 11.288 (2), 15.965 (3), 14.449 (4) |
β (°) | 101.296 (12) |
V (Å3) | 2553.6 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.20 × 0.18 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1997) |
Tmin, Tmax | 0.980, 0.984 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6239, 2066, 1499 |
Rint | 0.039 |
(sin θ/λ)max (Å−1) | 0.578 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.136, 1.05 |
No. of reflections | 2066 |
No. of parameters | 165 |
No. of restraints | 13 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.43, −0.21 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H2···O1 | 1.19 (3) | 1.26 (3) | 2.447 (3) | 172 (3) |
O5—H1W···O1i | 0.87 | 2.24 | 3.065 (3) | 158.0 |
N1—H1···O2ii | 0.86 | 1.94 | 2.773 (3) | 161.6 |
N3—H3A···N2 | 0.90 | 1.94 | 2.820 (3) | 165.4 |
N3—H3B···O4iii | 0.90 | 1.96 | 2.826 (3) | 160.7 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1/2, y, −z; (iii) −x+1/2, y, −z+1. |
References
Aghabozorg, H., Ghadermazi, M. & Sadr Khanlou, E. (2006). Anal. Sci. 22, x253–x254. CSD CrossRef CAS Google Scholar
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Bruker (1997). SMART, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
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t;text-indent:12.0 pt;mso-char-indent-count: 1.0;line-height:200%'>In the past decades, much attention has been focused on the design and synthesis of proton-transfer compounds, owing to their importance in physics, chemistry and biochemistry (Aghabozorg et al., 2006; Allen et al., 1987). Many multi-carboxylate or heterocyclic acids and piperazine are used for this purpose (Murugavel et al., 2009; Sheshmani et al., 2006). In order to extend the investigation, we have prepared the title compound, (I), and report its crystal structure here.
As shown in Fig.1, The asymmetric unit contains one half-cation, one anion and half a water molecule. There is a centre of inversion at the centre of the cation ring and one water molecule lies on a twofold rotation axis. The organic piperazinium dication lies at an inversion centre and adopts a typical chair geometry with normal valence bond lengths (Murugavel et al., 2009) and angles, as observed in the related structures (Sheshmani et al., 2007). The anionic fragment individually has two intramolecular hydrogen bonds, a O–H···O bond between adjacent carboxylate groups and a N–H···O bond between the imidazole ring and the carboxylate group (Fig. 2 and Table 1). In the crystal structure, intermolecular N–H···O and N–H···N hydrogen bonds play an important role in the construction of the three-dimensional framework (Fig. 3).