organic compounds
2,9-Dimethyl-7-phenyl-N-(4-methylphenyl)dibenzo[b,h][1,6]naphthyridin-6-amine
aCentre of Advanced Study in Crystallography and Biophysics, University of Madras, Guindy Campus, Chennai 600 025, India, and bDepartment of Chemistry, Bharathiar University, Coimbatore 641 046, India
*Correspondence e-mail: vennilakn@gmail.com
The title compound, C31H25N3, was synthesized from 6,4′,4′′-trimethyl-2,4-bis(N-phenylamino)quinoline and is the first structural example containing a phenyl and phenylamino fragment attached to a fused dibenzo[1,6]naphthyridine moiety. The fused tetracyclic ring system is essentially planar [r.m.s. deviation = 0.08 (3) Å]. The phenyl ring and the phenylamino group are inclined by 82.68 (6) and 35.31 (5)°, respectively, to the mean plane of the fused tetracyclic ring system. A weak intramolecular N—H⋯π(arene) interaction may in part influence the conformation of the molecule. In the crystal, molecules are linked by weak intermolecular C—H⋯N hydrogen bonds into centrosymmetric dimers. Additional stabilization is provided by weak C—H⋯π and π–π stacking interactions [centroid–centroid distances = 3.834 (2) and 3.898 (1) Å].
Related literature
For the biological activity of [1,6]naphthyridine derivatives, see: Ruchelman et al. (2003, 2005); Hinschberger et al. (2003); Bedard et al. (2000); Feng et al. (2008). For the synthesis of the title compound, see: Manoj & Rajendra Prasad (2009). For the crystal structures of other [1,6]naphthrydine derivatives, see: Peng et al. (2009); Sivakumar et al. (2003); Seebacher et al. (2010); Vennila et al. (2010). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2004); cell APEX2 and SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810051196/lh5177sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810051196/lh5177Isup2.hkl
The synthesis follows the procedure of Manoj & Rajendra Prasad (2009). Preparation of 6,4',4''-Trimethyl-2,4-bis-(N-phenylamino)quinoline: A mixture of appropriate 2,4-dichloro-6-methylquinoline (0.010 mol) and p-toluidine (0.010 mol) was heated at 433K for half an hour. The product obtained was washed with water, dried and purified by
over silica gel and eluted with ethyl acetate : methanol mixture (95 : 5) to yield a white solid. The product was recrytallized from methanol. Preparation of 2,9,4'-Trimethyl-7-phenyl-6-(N-phenylamino) dibenzo[b,h][1,6] naphthyridine: An mixture of 6,4',4''-trimethyl-2,4-bis-(N-phenylamino) quinoline (0.0010 mol) and benzoic acid (0.0011 mol) was added to polyphosphoric acid (3 g of P2O5 in 1.5 mL of H3PO4) and kept at 323-328 K for 5 hours. The reaction was monitored by TLC. After the completion of the reaction, the reaction mixture was poured into ice water and neutralised with saturated NaHCO3 solution to remove the excess benzoic acid. The precipitate was filtered, dried and purified by over silica gel using petroleum ether : ethyl acetate (99 : 1) mixture to obtain yellow solid. The yellow solid was dissolved in ethylacetate and left to crystallize at 277K for about 6 months. Only few crystals were obtained and the best available was used for the X-ray structure analysis.The H-atoms were positioned geometrically and treated as riding atoms: C—H =0.93 Å H-aromatic, C—H = 0.96 Å H-methyl, and N—H = 0.86 Å, with Uiso = k×Ueq(parent C or N-atom), where k = 1.5 for methyl H-atoms, and = 1.2 for all other H-atoms. The low percentage of data used (because of low theta cut-off) may affect the precision of the structure.
The crystal structures of number of differently substituted naphthyridine derivatives have already been reported (e.g. Peng et al. 2009) but among those only few are dibenzo[1,6] naphthyridine compounds (e.g. Sivakumar et al. 2003; Seebacher et al., 2010). [1,6]Naphthyridine compounds are known to have biological activities (Ruchelman et al. 2005; Hinschberger et al. 2003; Feng et al., 2008). Dibenzo[1,6]naphthyridines are reported to have potent Topomerase I targeting, cytotoxic (Ruchelman et al., 2003) and are also proven anti-tumour agents. A series of [1,6] naphthyridine compounds were shown to exhibit potent activity against human cytomegalovirus (Bedard et al. , 2000). We are focused on preparing heterocyclic naphthyridine derivatives with potential biological properties. The
of the title compound is presented herein.The molecular structure of the title compound is shown in Fig. 1 The fused tetracyclic ring system is essentially planar (r.m.s. deviation = 0.08 (3)Å) as was reported for a previously determined structure (Vennila et al., 2010). The phenyl ring and the phenyl amino group are inclined by 82.68 (6)° and 35.31 (5)°, respectively to the mean plane of the fused tetracyclic ring system. The bond lengths (Allen et al., 1987) and angles are in the normal ranges. In the π and π–π stacking interactions.
(Fig. 2), molecules are linked by weak intermolecular C-H···N hydrogen bonds into centrosymmetric dimers. Additional stabilization is provided by weak C-H···For the biological activity of [1,6]naphthyridine derivatives, see: Ruchelman et al. (2003, 2005); Hinschberger et al. (2003); Bedard et al. (2000); Feng et al. (2008). For the synthesis of the title compound, see: Manoj & Rajendra Prasad (2009). For the crystal structures of other [1,6]naphthrydine derivatives, see: Peng et al. (2009); Sivakumar et al. (2003); Seebacher et al. (2010); Vennila et al. (2010). For bond-length data, see: Allen et al. (1987).
Data collection: APEX2 (Bruker, 2004); cell
APEX2 and SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound showing the thermal ellipsoids drawn at the 50% probability level. | |
Fig. 2. The crystal packing viewed along the b-axis with weak hydrogen bonds and C-H..π interactions shown as dotted lines |
C31H25N3 | F(000) = 928 |
Mr = 439.54 | Dx = 1.237 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2938 reflections |
a = 11.9390 (4) Å | θ = 2.2–21.2° |
b = 10.5595 (4) Å | µ = 0.07 mm−1 |
c = 19.6084 (7) Å | T = 293 K |
β = 107.369 (2)° | Prismatic, yellow |
V = 2359.31 (15) Å3 | 0.30 × 0.20 × 0.20 mm |
Z = 4 |
Bruker APEXII CCD diffractometer | 2938 independent reflections |
Radiation source: fine-focus sealed tube | 2197 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.037 |
ω and φ scans | θmax = 22.1°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −12→12 |
Tmin = 0.982, Tmax = 0.986 | k = −11→11 |
17909 measured reflections | l = −20→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.132 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0713P)2 + 0.4411P] where P = (Fo2 + 2Fc2)/3 |
2938 reflections | (Δ/σ)max = 0.034 |
310 parameters | Δρmax = 0.21 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C31H25N3 | V = 2359.31 (15) Å3 |
Mr = 439.54 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.9390 (4) Å | µ = 0.07 mm−1 |
b = 10.5595 (4) Å | T = 293 K |
c = 19.6084 (7) Å | 0.30 × 0.20 × 0.20 mm |
β = 107.369 (2)° |
Bruker APEXII CCD diffractometer | 2938 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 2197 reflections with I > 2σ(I) |
Tmin = 0.982, Tmax = 0.986 | Rint = 0.037 |
17909 measured reflections | θmax = 22.1° |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.132 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.21 e Å−3 |
2938 reflections | Δρmin = −0.23 e Å−3 |
310 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C2 | 0.21879 (18) | 0.4613 (2) | 0.03581 (11) | 0.0434 (6) | |
N1 | 0.32355 (16) | 0.27439 (18) | 0.01274 (10) | 0.0508 (5) | |
N2 | 0.12176 (16) | 0.44039 (18) | 0.12785 (10) | 0.0529 (5) | |
C3 | 0.18596 (18) | 0.3921 (2) | 0.08942 (12) | 0.0448 (6) | |
C4 | 0.22420 (18) | 0.2617 (2) | 0.10461 (12) | 0.0448 (6) | |
C12 | 0.08099 (19) | 0.5597 (2) | 0.11381 (12) | 0.0511 (6) | |
N3 | 0.32400 (17) | 0.45075 (18) | −0.05365 (10) | 0.0569 (6) | |
H3 | 0.3031 | 0.5288 | −0.0607 | 0.068* | |
C11 | 0.10670 (18) | 0.6366 (2) | 0.06154 (12) | 0.0461 (6) | |
C5 | 0.29150 (19) | 0.2088 (2) | 0.06518 (12) | 0.0473 (6) | |
C1 | 0.29049 (18) | 0.3908 (2) | −0.00132 (12) | 0.0459 (6) | |
C10 | 0.18035 (18) | 0.5874 (2) | 0.02346 (11) | 0.0448 (6) | |
C9 | 0.19467 (19) | 0.1887 (2) | 0.15606 (12) | 0.0512 (6) | |
H9 | 0.1499 | 0.2250 | 0.1824 | 0.061* | |
C8 | 0.2296 (2) | 0.0654 (2) | 0.16883 (12) | 0.0523 (6) | |
C17 | 0.21691 (19) | 0.6767 (2) | −0.02498 (13) | 0.0464 (6) | |
C23 | 0.38787 (19) | 0.4030 (2) | −0.09768 (12) | 0.0480 (6) | |
C16 | 0.0570 (2) | 0.7604 (2) | 0.05065 (13) | 0.0546 (6) | |
H16 | 0.0741 | 0.8128 | 0.0169 | 0.066* | |
C6 | 0.3278 (2) | 0.0832 (2) | 0.07839 (13) | 0.0592 (7) | |
H6 | 0.3736 | 0.0465 | 0.0528 | 0.071* | |
C14 | −0.0376 (2) | 0.7257 (3) | 0.13967 (14) | 0.0659 (7) | |
H14 | −0.0858 | 0.7554 | 0.1657 | 0.079* | |
C13 | 0.0083 (2) | 0.6078 (3) | 0.15287 (14) | 0.0666 (7) | |
H13 | −0.0082 | 0.5581 | 0.1879 | 0.080* | |
C7 | 0.2968 (2) | 0.0136 (2) | 0.12858 (13) | 0.0604 (7) | |
H7 | 0.3210 | −0.0702 | 0.1361 | 0.073* | |
C24 | 0.4578 (2) | 0.4875 (2) | −0.11974 (13) | 0.0548 (6) | |
H24 | 0.4660 | 0.5699 | −0.1022 | 0.066* | |
C15 | −0.0144 (2) | 0.8045 (2) | 0.08782 (14) | 0.0575 (7) | |
C29 | 0.1979 (2) | −0.0121 (3) | 0.22479 (14) | 0.0678 (8) | |
H29A | 0.1430 | 0.0340 | 0.2424 | 0.102* | |
H29B | 0.2674 | −0.0292 | 0.2635 | 0.102* | |
H29C | 0.1632 | −0.0906 | 0.2042 | 0.102* | |
C22 | 0.1465 (2) | 0.7020 (2) | −0.09377 (14) | 0.0617 (7) | |
H22 | 0.0736 | 0.6633 | −0.1112 | 0.074* | |
C28 | 0.3782 (2) | 0.2810 (2) | −0.12414 (13) | 0.0571 (7) | |
H28 | 0.3323 | 0.2220 | −0.1094 | 0.069* | |
C27 | 0.4362 (2) | 0.2465 (3) | −0.17227 (13) | 0.0632 (7) | |
H27 | 0.4281 | 0.1641 | −0.1898 | 0.076* | |
C26 | 0.5057 (2) | 0.3298 (3) | −0.19527 (13) | 0.0617 (7) | |
C25 | 0.5157 (2) | 0.4509 (3) | −0.16770 (13) | 0.0609 (7) | |
H25 | 0.5628 | 0.5093 | −0.1818 | 0.073* | |
C18 | 0.3242 (2) | 0.7371 (2) | −0.00024 (15) | 0.0591 (7) | |
H18 | 0.3714 | 0.7220 | 0.0462 | 0.071* | |
C21 | 0.1851 (3) | 0.7849 (3) | −0.13643 (16) | 0.0780 (9) | |
H21 | 0.1380 | 0.8018 | −0.1827 | 0.094* | |
C30 | −0.0682 (2) | 0.9343 (2) | 0.07514 (16) | 0.0744 (8) | |
H30A | −0.0115 | 0.9959 | 0.0999 | 0.112* | |
H30B | −0.1353 | 0.9375 | 0.0925 | 0.112* | |
H30C | −0.0921 | 0.9525 | 0.0249 | 0.112* | |
C20 | 0.2927 (3) | 0.8426 (3) | −0.1109 (2) | 0.0818 (10) | |
H20 | 0.3183 | 0.8980 | −0.1399 | 0.098* | |
C19 | 0.3623 (3) | 0.8190 (3) | −0.04288 (19) | 0.0752 (8) | |
H19 | 0.4351 | 0.8582 | −0.0257 | 0.090* | |
C31 | 0.5664 (3) | 0.2936 (3) | −0.24940 (15) | 0.0941 (11) | |
H31A | 0.5255 | 0.3305 | −0.2948 | 0.141* | |
H31B | 0.5666 | 0.2031 | −0.2539 | 0.141* | |
H31C | 0.6457 | 0.3242 | −0.2341 | 0.141* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C2 | 0.0396 (12) | 0.0431 (14) | 0.0481 (14) | 0.0009 (10) | 0.0139 (11) | −0.0022 (11) |
N1 | 0.0549 (12) | 0.0442 (13) | 0.0578 (13) | 0.0076 (9) | 0.0240 (10) | 0.0019 (10) |
N2 | 0.0570 (12) | 0.0496 (13) | 0.0591 (13) | 0.0049 (10) | 0.0277 (10) | 0.0003 (10) |
C3 | 0.0415 (13) | 0.0463 (14) | 0.0475 (14) | 0.0003 (10) | 0.0149 (11) | −0.0041 (11) |
C4 | 0.0427 (13) | 0.0444 (14) | 0.0461 (14) | −0.0006 (10) | 0.0115 (11) | −0.0010 (11) |
C12 | 0.0506 (14) | 0.0493 (16) | 0.0578 (15) | 0.0032 (12) | 0.0228 (12) | −0.0040 (13) |
N3 | 0.0722 (14) | 0.0440 (12) | 0.0677 (14) | 0.0125 (10) | 0.0410 (12) | 0.0060 (10) |
C11 | 0.0436 (13) | 0.0410 (14) | 0.0549 (15) | 0.0023 (10) | 0.0165 (11) | −0.0046 (11) |
C5 | 0.0470 (13) | 0.0435 (15) | 0.0508 (14) | 0.0027 (11) | 0.0138 (11) | −0.0007 (12) |
C1 | 0.0434 (13) | 0.0448 (15) | 0.0507 (15) | 0.0025 (11) | 0.0158 (11) | −0.0020 (12) |
C10 | 0.0422 (13) | 0.0435 (15) | 0.0485 (14) | 0.0001 (10) | 0.0133 (11) | −0.0023 (11) |
C9 | 0.0489 (14) | 0.0526 (17) | 0.0526 (15) | 0.0011 (11) | 0.0158 (12) | −0.0003 (12) |
C8 | 0.0520 (14) | 0.0495 (16) | 0.0509 (15) | −0.0005 (12) | 0.0088 (12) | 0.0042 (12) |
C17 | 0.0485 (14) | 0.0387 (14) | 0.0565 (16) | 0.0069 (11) | 0.0225 (12) | 0.0006 (12) |
C23 | 0.0508 (14) | 0.0473 (15) | 0.0492 (14) | 0.0090 (11) | 0.0198 (12) | 0.0027 (12) |
C16 | 0.0553 (14) | 0.0475 (15) | 0.0620 (16) | 0.0045 (11) | 0.0189 (13) | −0.0021 (12) |
C6 | 0.0664 (16) | 0.0510 (17) | 0.0650 (17) | 0.0116 (13) | 0.0266 (14) | 0.0006 (13) |
C14 | 0.0642 (16) | 0.0645 (19) | 0.080 (2) | 0.0080 (14) | 0.0376 (15) | −0.0138 (15) |
C13 | 0.0743 (18) | 0.0638 (19) | 0.0756 (18) | 0.0079 (14) | 0.0437 (15) | −0.0024 (15) |
C7 | 0.0693 (17) | 0.0465 (16) | 0.0641 (18) | 0.0089 (12) | 0.0178 (14) | 0.0072 (13) |
C24 | 0.0616 (15) | 0.0505 (16) | 0.0568 (16) | 0.0037 (12) | 0.0244 (13) | 0.0030 (12) |
C15 | 0.0507 (14) | 0.0545 (16) | 0.0683 (17) | 0.0057 (12) | 0.0193 (13) | −0.0115 (14) |
C29 | 0.0722 (18) | 0.0643 (18) | 0.0665 (18) | −0.0023 (13) | 0.0200 (14) | 0.0124 (14) |
C22 | 0.0666 (16) | 0.0567 (17) | 0.0641 (18) | 0.0094 (13) | 0.0230 (15) | 0.0042 (14) |
C28 | 0.0601 (15) | 0.0553 (17) | 0.0623 (16) | 0.0010 (12) | 0.0280 (13) | −0.0026 (13) |
C27 | 0.0730 (17) | 0.0601 (17) | 0.0597 (17) | 0.0098 (14) | 0.0248 (14) | −0.0055 (13) |
C26 | 0.0681 (17) | 0.071 (2) | 0.0508 (16) | 0.0211 (14) | 0.0254 (13) | 0.0070 (14) |
C25 | 0.0569 (15) | 0.073 (2) | 0.0594 (16) | 0.0070 (13) | 0.0274 (13) | 0.0154 (15) |
C18 | 0.0631 (16) | 0.0503 (16) | 0.0694 (17) | −0.0022 (13) | 0.0282 (14) | −0.0012 (13) |
C21 | 0.111 (3) | 0.070 (2) | 0.0632 (19) | 0.0262 (19) | 0.0413 (18) | 0.0143 (16) |
C30 | 0.0693 (17) | 0.0624 (18) | 0.091 (2) | 0.0197 (14) | 0.0233 (15) | −0.0106 (16) |
C20 | 0.118 (3) | 0.0528 (19) | 0.105 (3) | 0.0048 (18) | 0.079 (2) | 0.0082 (18) |
C19 | 0.084 (2) | 0.0567 (19) | 0.101 (3) | −0.0073 (15) | 0.052 (2) | −0.0060 (18) |
C31 | 0.115 (3) | 0.111 (3) | 0.076 (2) | 0.033 (2) | 0.058 (2) | 0.0119 (19) |
C2—C10 | 1.406 (3) | C14—C15 | 1.403 (3) |
C2—C3 | 1.428 (3) | C14—H14 | 0.9300 |
C2—C1 | 1.480 (3) | C13—H13 | 0.9300 |
N1—C1 | 1.295 (3) | C7—H7 | 0.9300 |
N1—C5 | 1.385 (3) | C24—C25 | 1.379 (3) |
N2—C3 | 1.327 (3) | C24—H24 | 0.9300 |
N2—C12 | 1.349 (3) | C15—C30 | 1.503 (3) |
C3—C4 | 1.453 (3) | C29—H29A | 0.9600 |
C4—C5 | 1.388 (3) | C29—H29B | 0.9600 |
C4—C9 | 1.396 (3) | C29—H29C | 0.9600 |
C12—C11 | 1.411 (3) | C22—C21 | 1.381 (4) |
C12—C13 | 1.412 (3) | C22—H22 | 0.9300 |
N3—C1 | 1.364 (3) | C28—C27 | 1.376 (3) |
N3—C23 | 1.405 (3) | C28—H28 | 0.9300 |
N3—H3 | 0.8600 | C27—C26 | 1.374 (4) |
C11—C10 | 1.412 (3) | C27—H27 | 0.9300 |
C11—C16 | 1.424 (3) | C26—C25 | 1.380 (4) |
C5—C6 | 1.396 (3) | C26—C31 | 1.502 (3) |
C10—C17 | 1.493 (3) | C25—H25 | 0.9300 |
C9—C8 | 1.368 (3) | C18—C19 | 1.371 (4) |
C9—H9 | 0.9300 | C18—H18 | 0.9300 |
C8—C7 | 1.394 (3) | C21—C20 | 1.374 (4) |
C8—C29 | 1.505 (3) | C21—H21 | 0.9300 |
C17—C18 | 1.383 (3) | C30—H30A | 0.9600 |
C17—C22 | 1.386 (3) | C30—H30B | 0.9600 |
C23—C24 | 1.377 (3) | C30—H30C | 0.9600 |
C23—C28 | 1.381 (3) | C20—C19 | 1.367 (4) |
C16—C15 | 1.359 (3) | C20—H20 | 0.9300 |
C16—H16 | 0.9300 | C19—H19 | 0.9300 |
C6—C7 | 1.365 (3) | C31—H31A | 0.9600 |
C6—H6 | 0.9300 | C31—H31B | 0.9600 |
C14—C13 | 1.354 (3) | C31—H31C | 0.9600 |
C10—C2—C3 | 117.67 (19) | C6—C7—H7 | 119.2 |
C10—C2—C1 | 126.8 (2) | C8—C7—H7 | 119.2 |
C3—C2—C1 | 115.5 (2) | C23—C24—C25 | 120.4 (2) |
C1—N1—C5 | 119.88 (18) | C23—C24—H24 | 119.8 |
C3—N2—C12 | 118.52 (19) | C25—C24—H24 | 119.8 |
N2—C3—C2 | 123.6 (2) | C16—C15—C14 | 118.5 (2) |
N2—C3—C4 | 116.57 (19) | C16—C15—C30 | 121.9 (2) |
C2—C3—C4 | 119.82 (18) | C14—C15—C30 | 119.6 (2) |
C5—C4—C9 | 119.6 (2) | C8—C29—H29A | 109.5 |
C5—C4—C3 | 117.8 (2) | C8—C29—H29B | 109.5 |
C9—C4—C3 | 122.7 (2) | H29A—C29—H29B | 109.5 |
N2—C12—C11 | 122.84 (19) | C8—C29—H29C | 109.5 |
N2—C12—C13 | 117.9 (2) | H29A—C29—H29C | 109.5 |
C11—C12—C13 | 119.3 (2) | H29B—C29—H29C | 109.5 |
C1—N3—C23 | 129.1 (2) | C21—C22—C17 | 119.8 (3) |
C1—N3—H3 | 115.4 | C21—C22—H22 | 120.1 |
C23—N3—H3 | 115.4 | C17—C22—H22 | 120.1 |
C10—C11—C12 | 118.5 (2) | C27—C28—C23 | 120.1 (2) |
C10—C11—C16 | 123.7 (2) | C27—C28—H28 | 119.9 |
C12—C11—C16 | 117.8 (2) | C23—C28—H28 | 119.9 |
N1—C5—C4 | 123.1 (2) | C28—C27—C26 | 122.2 (3) |
N1—C5—C6 | 118.3 (2) | C28—C27—H27 | 118.9 |
C4—C5—C6 | 118.6 (2) | C26—C27—H27 | 118.9 |
N1—C1—N3 | 117.50 (19) | C27—C26—C25 | 117.1 (2) |
N1—C1—C2 | 123.9 (2) | C27—C26—C31 | 122.4 (3) |
N3—C1—C2 | 118.6 (2) | C25—C26—C31 | 120.6 (3) |
C2—C10—C11 | 118.7 (2) | C24—C25—C26 | 121.7 (2) |
C2—C10—C17 | 124.41 (19) | C24—C25—H25 | 119.2 |
C11—C10—C17 | 116.81 (19) | C26—C25—H25 | 119.2 |
C8—C9—C4 | 122.0 (2) | C19—C18—C17 | 121.2 (3) |
C8—C9—H9 | 119.0 | C19—C18—H18 | 119.4 |
C4—C9—H9 | 119.0 | C17—C18—H18 | 119.4 |
C9—C8—C7 | 117.7 (2) | C20—C21—C22 | 120.3 (3) |
C9—C8—C29 | 121.5 (2) | C20—C21—H21 | 119.9 |
C7—C8—C29 | 120.8 (2) | C22—C21—H21 | 119.9 |
C18—C17—C22 | 118.8 (2) | C15—C30—H30A | 109.5 |
C18—C17—C10 | 119.0 (2) | C15—C30—H30B | 109.5 |
C22—C17—C10 | 122.3 (2) | H30A—C30—H30B | 109.5 |
C24—C23—C28 | 118.5 (2) | C15—C30—H30C | 109.5 |
C24—C23—N3 | 116.8 (2) | H30A—C30—H30C | 109.5 |
C28—C23—N3 | 124.4 (2) | H30B—C30—H30C | 109.5 |
C15—C16—C11 | 122.3 (2) | C19—C20—C21 | 120.3 (3) |
C15—C16—H16 | 118.9 | C19—C20—H20 | 119.8 |
C11—C16—H16 | 118.9 | C21—C20—H20 | 119.8 |
C7—C6—C5 | 120.6 (2) | C20—C19—C18 | 119.6 (3) |
C7—C6—H6 | 119.7 | C20—C19—H19 | 120.2 |
C5—C6—H6 | 119.7 | C18—C19—H19 | 120.2 |
C13—C14—C15 | 121.8 (2) | C26—C31—H31A | 109.5 |
C13—C14—H14 | 119.1 | C26—C31—H31B | 109.5 |
C15—C14—H14 | 119.1 | H31A—C31—H31B | 109.5 |
C14—C13—C12 | 120.4 (2) | C26—C31—H31C | 109.5 |
C14—C13—H13 | 119.8 | H31A—C31—H31C | 109.5 |
C12—C13—H13 | 119.8 | H31B—C31—H31C | 109.5 |
C6—C7—C8 | 121.6 (2) | ||
C12—N2—C3—C2 | 2.8 (3) | C4—C9—C8—C7 | 0.2 (3) |
C12—N2—C3—C4 | −177.8 (2) | C4—C9—C8—C29 | 179.5 (2) |
C10—C2—C3—N2 | −0.1 (3) | C2—C10—C17—C18 | −80.6 (3) |
C1—C2—C3—N2 | −179.91 (19) | C11—C10—C17—C18 | 96.2 (3) |
C10—C2—C3—C4 | −179.53 (19) | C2—C10—C17—C22 | 100.0 (3) |
C1—C2—C3—C4 | 0.6 (3) | C11—C10—C17—C22 | −83.2 (3) |
N2—C3—C4—C5 | 180.0 (2) | C1—N3—C23—C24 | −149.1 (2) |
C2—C3—C4—C5 | −0.5 (3) | C1—N3—C23—C28 | 36.0 (4) |
N2—C3—C4—C9 | 0.8 (3) | C10—C11—C16—C15 | 179.4 (2) |
C2—C3—C4—C9 | −179.7 (2) | C12—C11—C16—C15 | −1.0 (3) |
C3—N2—C12—C11 | −2.0 (3) | N1—C5—C6—C7 | −178.8 (2) |
C3—N2—C12—C13 | 177.1 (2) | C4—C5—C6—C7 | 0.6 (4) |
N2—C12—C11—C10 | −1.4 (3) | C15—C14—C13—C12 | −0.5 (4) |
C13—C12—C11—C10 | 179.5 (2) | N2—C12—C13—C14 | −178.3 (2) |
N2—C12—C11—C16 | 179.0 (2) | C11—C12—C13—C14 | 0.9 (4) |
C13—C12—C11—C16 | −0.1 (3) | C5—C6—C7—C8 | −0.9 (4) |
C1—N1—C5—C4 | 0.0 (3) | C9—C8—C7—C6 | 0.4 (4) |
C1—N1—C5—C6 | 179.4 (2) | C29—C8—C7—C6 | −178.9 (2) |
C9—C4—C5—N1 | 179.4 (2) | C28—C23—C24—C25 | 0.6 (3) |
C3—C4—C5—N1 | 0.2 (3) | N3—C23—C24—C25 | −174.7 (2) |
C9—C4—C5—C6 | 0.0 (3) | C11—C16—C15—C14 | 1.4 (4) |
C3—C4—C5—C6 | −179.2 (2) | C11—C16—C15—C30 | −178.9 (2) |
C5—N1—C1—N3 | −179.7 (2) | C13—C14—C15—C16 | −0.6 (4) |
C5—N1—C1—C2 | 0.1 (3) | C13—C14—C15—C30 | 179.7 (2) |
C23—N3—C1—N1 | 2.3 (4) | C18—C17—C22—C21 | 1.0 (3) |
C23—N3—C1—C2 | −177.5 (2) | C10—C17—C22—C21 | −179.6 (2) |
C10—C2—C1—N1 | 179.7 (2) | C24—C23—C28—C27 | −0.9 (4) |
C3—C2—C1—N1 | −0.5 (3) | N3—C23—C28—C27 | 173.9 (2) |
C10—C2—C1—N3 | −0.4 (3) | C23—C28—C27—C26 | 0.5 (4) |
C3—C2—C1—N3 | 179.37 (19) | C28—C27—C26—C25 | 0.3 (4) |
C3—C2—C10—C11 | −3.4 (3) | C28—C27—C26—C31 | −178.2 (2) |
C1—C2—C10—C11 | 176.4 (2) | C23—C24—C25—C26 | 0.2 (4) |
C3—C2—C10—C17 | 173.4 (2) | C27—C26—C25—C24 | −0.7 (4) |
C1—C2—C10—C17 | −6.8 (4) | C31—C26—C25—C24 | 177.8 (2) |
C12—C11—C10—C2 | 4.1 (3) | C22—C17—C18—C19 | −1.2 (4) |
C16—C11—C10—C2 | −176.3 (2) | C10—C17—C18—C19 | 179.3 (2) |
C12—C11—C10—C17 | −172.9 (2) | C17—C22—C21—C20 | −0.2 (4) |
C16—C11—C10—C17 | 6.6 (3) | C22—C21—C20—C19 | −0.3 (4) |
C5—C4—C9—C8 | −0.4 (3) | C21—C20—C19—C18 | 0.1 (4) |
C3—C4—C9—C8 | 178.8 (2) | C17—C18—C19—C20 | 0.7 (4) |
Cg1 and Cg2 are the centroids of the C17–C22 and C23–C28 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···Cg1 | 0.86 | 2.51 | 3.364 (3) | 174 |
C18—H18···Cg2i | 0.93 | 2.62 | 3.495 (3) | 156 |
C29—H29B···Cg2ii | 0.96 | 2.90 | 3.622 (3) | 133 |
C22—H22···N2iii | 0.93 | 2.51 | 3.419 (3) | 166 |
C28—H28···N1 | 0.93 | 2.49 | 2.946 (3) | 110 |
Symmetry codes: (i) −x+1, −y, −z; (ii) x, −y−1/2, z−1/2; (iii) −x, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C31H25N3 |
Mr | 439.54 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 11.9390 (4), 10.5595 (4), 19.6084 (7) |
β (°) | 107.369 (2) |
V (Å3) | 2359.31 (15) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.982, 0.986 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17909, 2938, 2197 |
Rint | 0.037 |
θmax (°) | 22.1 |
(sin θ/λ)max (Å−1) | 0.530 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.132, 1.07 |
No. of reflections | 2938 |
No. of parameters | 310 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.21, −0.23 |
Computer programs: APEX2 (Bruker, 2004), APEX2 and SAINT (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), ORTEPII (Johnson, 1976), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 and Cg2 are the centroids of the C17–C22 and C23–C28 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···Cg1 | 0.86 | 2.51 | 3.364 (3) | 174 |
C18—H18···Cg2i | 0.93 | 2.62 | 3.495 (3) | 156 |
C29—H29B···Cg2ii | 0.96 | 2.90 | 3.622 (3) | 133 |
C22—H22···N2iii | 0.93 | 2.51 | 3.419 (3) | 166 |
Symmetry codes: (i) −x+1, −y, −z; (ii) x, −y−1/2, z−1/2; (iii) −x, −y+1, −z. |
Cg2, Cg3 and Cg4 are the centroids of the N1/C1–C5, N2/C2/C3/C10–C12 and C11–C16 rings, respectively. |
Cg(I) | Cg(J) | Centroid-to-Centroid |
Cg(2) | Cg(4i) | 3.834 (2) |
Cg(3) | Cg(3i) | 3.898 (1) |
Symmetry code (i): -x, 1-y, -z. |
Acknowledgements
DV acknowledges the Department of Science and Technology (DST) for providing data collection facilities under major research projects and is also thankful for financial support to the Department under the UGC–SAP and DST–FIST programs.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CSD CrossRef Web of Science Google Scholar
Bedard, J., May, S., Heureux, L. L., Stamminger, T., Copsey, A., Drach, G., Huffman, J., Chan, L., Jin, H. & Rando, F. R. (2000). Antimicrob. Agents Chemother. 44, 929–937. Web of Science CrossRef PubMed CAS Google Scholar
Bruker (2004). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Feng, W., Satyanarayana, M., Cheng, L., Liu, A., Tsai, Y. C., Liu, L. F. & LaVoie, E. J. (2008). Bioorg. Med. Chem. 16, 9295–9301. Web of Science CrossRef PubMed CAS Google Scholar
Hinschberger, A., Butt, S., Lelong, V., Boulouard, M., Dumuis, A., Dauphin, F., Bureau, R., Pfeiffer, B., Renard, P. & Rault, S. (2003). J. Med. Chem. 43, 138–147. Web of Science CrossRef Google Scholar
Johnson, C. K. (1976). ORTEPII. Report ORNL-5138. Oak Ridge National Laboratory, Tennessee, USA. Google Scholar
Manoj, M. & Rajendra Prasad, K. J. (2009). J. Chem. Res. pp. 485–488. Web of Science CrossRef Google Scholar
Peng, J., Han, Z., Ma, N. & Tu, S. (2009). Acta Cryst. E65, o1109–o1110. Web of Science CSD CrossRef IUCr Journals Google Scholar
Ruchelman, A. L., Houghton, P. J., Zhou, N., Liu, A., Liu, L. F. & LaVoie, E. J. (2005). J. Med Chem. 48, 792–804. Web of Science CrossRef PubMed CAS Google Scholar
Ruchelman, A. L., Singh, K. S., Ray, A., Wu, H. X., Yang, M. J., Li, T. K., Liu, A., Liu, L. F. & LaVoie, E. J. (2003). Bioorg. Med. Chem. 11, 2061–2073. Web of Science CrossRef PubMed CAS Google Scholar
Seebacher, W., Weis, R., Saf, R. & Belaj, F. (2010). Acta Cryst. E66, o1114. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sivakumar, B., SethuSankar, K., Senthil Kumar, U. P., Jeyaraman, R. & Velmurugan, D. (2003). Acta Cryst. C59, o153–o155. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Vennila, K. N., Prabha, K., Manoj, M., Prasad, K. J. R. & Velmurugan, D. (2010). Acta Cryst. E66, o2426–o2427. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The crystal structures of number of differently substituted naphthyridine derivatives have already been reported (e.g. Peng et al. 2009) but among those only few are dibenzo[1,6] naphthyridine compounds (e.g. Sivakumar et al. 2003; Seebacher et al., 2010). [1,6]Naphthyridine compounds are known to have biological activities (Ruchelman et al. 2005; Hinschberger et al. 2003; Feng et al., 2008). Dibenzo[1,6]naphthyridines are reported to have potent Topomerase I targeting, cytotoxic (Ruchelman et al., 2003) and are also proven anti-tumour agents. A series of [1,6] naphthyridine compounds were shown to exhibit potent activity against human cytomegalovirus (Bedard et al. , 2000). We are focused on preparing heterocyclic naphthyridine derivatives with potential biological properties. The crystal structure of the title compound is presented herein.
The molecular structure of the title compound is shown in Fig. 1 The fused tetracyclic ring system is essentially planar (r.m.s. deviation = 0.08 (3)Å) as was reported for a previously determined structure (Vennila et al., 2010). The phenyl ring and the phenyl amino group are inclined by 82.68 (6)° and 35.31 (5)°, respectively to the mean plane of the fused tetracyclic ring system. The bond lengths (Allen et al., 1987) and angles are in the normal ranges. In the crystal structure (Fig. 2), molecules are linked by weak intermolecular C-H···N hydrogen bonds into centrosymmetric dimers. Additional stabilization is provided by weak C-H···π and π–π stacking interactions.