organic compounds
5-Hydroxy-8,8-dimethyl-10-(2-methylbut-3-en-2-yl)-2H,6H-7,8-dihydropyrano[3,2-g]chromene-2,6-dione
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bNatural Products Research Laboratory, School of Science, Mae Fah Luang University, Tasud, Muang Chiang Rai 57100, Thailand, and cCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
*Correspondence e-mail: hkfun@usm.my
In the title compound, C19H20O5, the pyran ring is in an whereas the benzene and dihydropyran ring system is planar with an r.m.s. deviation of 0.0190 (1) Å. The hydroxy group is coplanar with the attached benzene ring [r.m.s. deviation = 0.0106 (1) Å]. An intramolecular O—H⋯O hydrogen bond generates an S(6) ring motif. In the crystal, molecules are linked into chains along the b axis by weak C—H⋯O interactions. These chains are stacked along the a axis. C—H⋯π and weak π–π interactions [centroid–centroid distance = 3.7698 (7) Å] are also observed.
Related literature
For bond-length data, see: Allen et al. (1987). For hydrogen-bond motifs, see: Bernstein et al. (1995) and for ring conformations, see: Cremer & Pople (1975). For background to Rutaceae plants, and their biological activity, see: Kongkathip et al. (2005); Laphookhieo et al. (2009); Maneerat et al. (2010); Huang et al. (1997); Su et al. (2009); Tangyuenyongwatthana et al. (1992); Yenjai et al. (2000).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811001565/bq2271sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811001565/bq2271Isup2.hkl
The roots of C. excavata (3.98 Kg) were successively extracted with CH2Cl2 over the period of 3 days at room temperature to provide the crude CH2Cl2 extract which was subjected to quick
(QCC) over silica gel eluted with a gradient of hexane-EtOAc (100% hexane to 100% EtOAc) to provide twenty-one fractions (A-U). Fraction G (10.68 g) was further separated by QCC with a gradient of 10% EtOAc-hexane to 100% EtOAc to give seven subfractions (G1-G7). Subfraction G4 (1.82 g) was subjected to repeated using 6% EtOAc-hexane to yield the yellow solid of the title compound (30.0 mg). Yellow block-shaped single crystals of the title compound suitable for x-ray were recrystallized from CH2Cl2/CH3OH (4:1 v/v) by the slow evaporation of the solvent at room temperature after several days, Mp. 410-411 K (decomposition).Hydrogen atoms attached to C15 and hydroxyl H atom were located from the difference map and refined isotropically. The remaining H atoms were placed in calculated positions with (C—H) = 0.93 for aromatic and CH, 0.97 for CH2 and 0.96 Å for CH3 atoms. The Uiso values were constrained to be 1.5Ueq of the
for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups. The highest residual electron density peak is located at 1.51 Å from H16C and the deepest hole is located at 1.43 Å from C11.Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The structure of (I), showing 50% probability displacement ellipsoids and the atom-numbering scheme. O—H···O hydrogen bond is shown as dashed line. | |
Fig. 2. The crystal packing of (I) viewed along the c axis, showing chains along the b axis. Hydrogen bonds are shown as dashed lines. |
C19H20O5 | F(000) = 696 |
Mr = 328.35 | Dx = 1.361 Mg m−3 |
Monoclinic, P21/c | Melting point = 410–411 K |
Hall symbol: -P 2ybc | Cu Kα radiation, λ = 1.54178 Å |
a = 10.2239 (2) Å | Cell parameters from 3114 reflections |
b = 11.3090 (3) Å | θ = 5.8–72.0° |
c = 13.8764 (3) Å | µ = 0.81 mm−1 |
β = 93.108 (1)° | T = 100 K |
V = 1602.06 (6) Å3 | Block, yellow |
Z = 4 | 0.43 × 0.43 × 0.33 mm |
Bruker APEX DUO CCD area-detector diffractometer | 3114 independent reflections |
Radiation source: sealed tube | 3088 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
ϕ and ω scans | θmax = 72.0°, θmin = 5.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −12→12 |
Tmin = 0.721, Tmax = 0.774 | k = −12→13 |
48432 measured reflections | l = −16→16 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.047 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.147 | w = 1/[σ2(Fo2) + (0.085P)2 + 0.4129P] where P = (Fo2 + 2Fc2)/3 |
S = 1.29 | (Δ/σ)max = 0.001 |
3114 reflections | Δρmax = 0.71 e Å−3 |
234 parameters | Δρmin = −0.84 e Å−3 |
0 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.041 (2) |
C19H20O5 | V = 1602.06 (6) Å3 |
Mr = 328.35 | Z = 4 |
Monoclinic, P21/c | Cu Kα radiation |
a = 10.2239 (2) Å | µ = 0.81 mm−1 |
b = 11.3090 (3) Å | T = 100 K |
c = 13.8764 (3) Å | 0.43 × 0.43 × 0.33 mm |
β = 93.108 (1)° |
Bruker APEX DUO CCD area-detector diffractometer | 3114 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3088 reflections with I > 2σ(I) |
Tmin = 0.721, Tmax = 0.774 | Rint = 0.027 |
48432 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.147 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.29 | Δρmax = 0.71 e Å−3 |
3114 reflections | Δρmin = −0.84 e Å−3 |
234 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.24205 (9) | 1.16069 (8) | 0.99936 (7) | 0.0182 (3) | |
O2 | 0.25452 (9) | 0.76187 (8) | 0.90044 (6) | 0.0178 (3) | |
O3 | 0.25906 (11) | 1.34713 (9) | 1.04469 (8) | 0.0251 (3) | |
O4 | 0.01977 (10) | 0.66004 (9) | 1.11316 (7) | 0.0228 (3) | |
O5 | 0.01904 (10) | 0.87092 (9) | 1.17530 (7) | 0.0216 (3) | |
H1O5 | 0.010 (2) | 0.789 (2) | 1.1695 (16) | 0.046 (6)* | |
C1 | 0.20676 (12) | 1.04507 (12) | 1.01109 (9) | 0.0155 (3) | |
C2 | 0.21353 (13) | 1.25150 (12) | 1.06206 (10) | 0.0188 (3) | |
C3 | 0.13341 (13) | 1.22145 (13) | 1.14119 (10) | 0.0201 (3) | |
H3A | 0.1083 | 1.2802 | 1.1833 | 0.024* | |
C4 | 0.09493 (13) | 1.10932 (12) | 1.15431 (10) | 0.0186 (3) | |
H4A | 0.0440 | 1.0912 | 1.2059 | 0.022* | |
C5 | 0.13116 (12) | 1.01699 (12) | 1.09000 (9) | 0.0164 (3) | |
C6 | 0.09425 (12) | 0.89887 (12) | 1.10224 (9) | 0.0165 (3) | |
C7 | 0.13559 (12) | 0.81207 (12) | 1.03860 (9) | 0.0162 (3) | |
C8 | 0.09306 (12) | 0.69006 (12) | 1.04907 (10) | 0.0180 (3) | |
C9 | 0.13851 (13) | 0.60284 (12) | 0.97689 (10) | 0.0194 (3) | |
H9A | 0.0724 | 0.5956 | 0.9244 | 0.023* | |
H9B | 0.1490 | 0.5260 | 1.0074 | 0.023* | |
C10 | 0.26803 (14) | 0.63988 (11) | 0.93635 (10) | 0.0183 (3) | |
C11 | 0.21402 (12) | 0.84528 (12) | 0.96178 (9) | 0.0154 (3) | |
C12 | 0.25049 (12) | 0.96284 (12) | 0.94385 (9) | 0.0154 (3) | |
C13 | 0.33249 (13) | 0.98950 (12) | 0.85555 (9) | 0.0176 (3) | |
C14 | 0.45881 (13) | 0.91792 (13) | 0.86498 (10) | 0.0211 (3) | |
H14A | 0.5002 | 0.9134 | 0.9262 | 0.025* | |
C15 | 0.51505 (15) | 0.86207 (14) | 0.79547 (11) | 0.0258 (4) | |
H15A | 0.473 (2) | 0.8581 (18) | 0.7301 (16) | 0.038 (5)* | |
H15B | 0.598 (2) | 0.8228 (18) | 0.8085 (14) | 0.034 (5)* | |
C16 | 0.24997 (13) | 0.95973 (13) | 0.76241 (9) | 0.0204 (3) | |
H16A | 0.2977 | 0.9812 | 0.7073 | 0.031* | |
H16B | 0.1691 | 1.0029 | 0.7614 | 0.031* | |
H16C | 0.2318 | 0.8765 | 0.7605 | 0.031* | |
C17 | 0.37739 (16) | 1.11907 (13) | 0.84519 (11) | 0.0273 (4) | |
H17A | 0.4288 | 1.1263 | 0.7896 | 0.041* | |
H17B | 0.4293 | 1.1419 | 0.9019 | 0.041* | |
H17C | 0.3020 | 1.1695 | 0.8377 | 0.041* | |
C18 | 0.29707 (16) | 0.56754 (13) | 0.84802 (11) | 0.0252 (3) | |
H18A | 0.3768 | 0.5951 | 0.8222 | 0.038* | |
H18B | 0.2263 | 0.5759 | 0.8001 | 0.038* | |
H18C | 0.3065 | 0.4858 | 0.8658 | 0.038* | |
C19 | 0.38167 (14) | 0.63524 (12) | 1.01187 (10) | 0.0213 (3) | |
H19A | 0.4603 | 0.6615 | 0.9837 | 0.032* | |
H19B | 0.3932 | 0.5555 | 1.0345 | 0.032* | |
H19C | 0.3631 | 0.6857 | 1.0650 | 0.032* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0233 (5) | 0.0130 (5) | 0.0188 (5) | −0.0003 (4) | 0.0045 (4) | −0.0003 (3) |
O2 | 0.0241 (5) | 0.0126 (5) | 0.0169 (5) | 0.0009 (4) | 0.0044 (4) | −0.0005 (3) |
O3 | 0.0334 (6) | 0.0144 (5) | 0.0278 (6) | −0.0006 (4) | 0.0039 (4) | −0.0006 (4) |
O4 | 0.0219 (5) | 0.0208 (5) | 0.0261 (5) | −0.0027 (4) | 0.0059 (4) | 0.0046 (4) |
O5 | 0.0235 (5) | 0.0213 (6) | 0.0208 (5) | −0.0009 (4) | 0.0088 (4) | 0.0018 (4) |
C1 | 0.0153 (6) | 0.0140 (6) | 0.0171 (6) | 0.0002 (5) | −0.0007 (5) | 0.0011 (5) |
C2 | 0.0205 (7) | 0.0156 (7) | 0.0201 (7) | 0.0024 (5) | −0.0015 (5) | −0.0020 (5) |
C3 | 0.0209 (7) | 0.0203 (7) | 0.0191 (7) | 0.0042 (5) | 0.0011 (5) | −0.0048 (5) |
C4 | 0.0165 (6) | 0.0225 (7) | 0.0168 (6) | 0.0024 (5) | 0.0018 (5) | −0.0015 (5) |
C5 | 0.0156 (6) | 0.0183 (7) | 0.0153 (6) | 0.0013 (5) | 0.0010 (5) | 0.0002 (5) |
C6 | 0.0139 (6) | 0.0210 (7) | 0.0147 (6) | 0.0006 (5) | 0.0012 (5) | 0.0019 (5) |
C7 | 0.0154 (6) | 0.0164 (7) | 0.0166 (6) | 0.0001 (5) | 0.0002 (5) | 0.0019 (5) |
C8 | 0.0150 (6) | 0.0183 (7) | 0.0204 (7) | 0.0003 (5) | −0.0015 (5) | 0.0033 (5) |
C9 | 0.0200 (7) | 0.0138 (6) | 0.0242 (7) | −0.0017 (5) | 0.0011 (5) | 0.0014 (5) |
C10 | 0.0227 (7) | 0.0120 (6) | 0.0206 (7) | 0.0008 (5) | 0.0028 (5) | 0.0009 (5) |
C11 | 0.0152 (6) | 0.0161 (7) | 0.0148 (6) | 0.0014 (5) | −0.0004 (5) | −0.0009 (5) |
C12 | 0.0159 (6) | 0.0157 (7) | 0.0147 (6) | 0.0003 (5) | 0.0013 (5) | 0.0007 (5) |
C13 | 0.0203 (7) | 0.0170 (7) | 0.0160 (6) | 0.0000 (5) | 0.0052 (5) | −0.0003 (5) |
C14 | 0.0180 (7) | 0.0267 (7) | 0.0187 (7) | −0.0006 (5) | 0.0011 (5) | 0.0007 (5) |
C15 | 0.0217 (7) | 0.0305 (8) | 0.0250 (8) | 0.0060 (6) | 0.0003 (6) | −0.0025 (6) |
C16 | 0.0217 (7) | 0.0233 (7) | 0.0165 (7) | 0.0032 (5) | 0.0030 (5) | 0.0028 (5) |
C17 | 0.0376 (9) | 0.0201 (7) | 0.0257 (7) | −0.0052 (6) | 0.0160 (6) | −0.0010 (6) |
C18 | 0.0338 (8) | 0.0174 (7) | 0.0248 (7) | 0.0017 (6) | 0.0048 (6) | −0.0037 (5) |
C19 | 0.0204 (7) | 0.0199 (7) | 0.0237 (7) | 0.0020 (5) | 0.0028 (5) | 0.0017 (5) |
O1—C1 | 1.3685 (16) | C10—C18 | 1.5164 (19) |
O1—C2 | 1.3872 (16) | C10—C19 | 1.5227 (19) |
O2—C11 | 1.3505 (16) | C11—C12 | 1.4065 (19) |
O2—C10 | 1.4708 (15) | C12—C13 | 1.5513 (17) |
O3—C2 | 1.2069 (18) | C13—C14 | 1.5238 (19) |
O4—C8 | 1.2410 (17) | C13—C16 | 1.5419 (18) |
O5—C6 | 1.3430 (16) | C13—C17 | 1.5445 (18) |
O5—H1O5 | 0.93 (2) | C14—C15 | 1.311 (2) |
C1—C12 | 1.4073 (19) | C14—H14A | 0.9300 |
C1—C5 | 1.4103 (18) | C15—H15A | 0.98 (2) |
C2—C3 | 1.4456 (19) | C15—H15B | 0.97 (2) |
C3—C4 | 1.343 (2) | C16—H16A | 0.9600 |
C3—H3A | 0.9300 | C16—H16B | 0.9600 |
C4—C5 | 1.4352 (18) | C16—H16C | 0.9600 |
C4—H4A | 0.9300 | C17—H17A | 0.9600 |
C5—C6 | 1.4009 (19) | C17—H17B | 0.9600 |
C6—C7 | 1.4009 (19) | C17—H17C | 0.9600 |
C7—C11 | 1.4189 (18) | C18—H18A | 0.9600 |
C7—C8 | 1.4564 (18) | C18—H18B | 0.9600 |
C8—C9 | 1.4975 (19) | C18—H18C | 0.9600 |
C9—C10 | 1.5253 (19) | C19—H19A | 0.9600 |
C9—H9A | 0.9700 | C19—H19B | 0.9600 |
C9—H9B | 0.9700 | C19—H19C | 0.9600 |
C1—O1—C2 | 124.55 (11) | C12—C11—C7 | 123.30 (12) |
C11—O2—C10 | 117.90 (10) | C11—C12—C1 | 114.24 (12) |
C6—O5—H1O5 | 103.0 (14) | C11—C12—C13 | 118.90 (11) |
O1—C1—C12 | 117.21 (12) | C1—C12—C13 | 126.86 (12) |
O1—C1—C5 | 117.81 (12) | C14—C13—C16 | 112.25 (11) |
C12—C1—C5 | 124.97 (13) | C14—C13—C17 | 104.91 (11) |
O3—C2—O1 | 116.21 (12) | C16—C13—C17 | 106.32 (11) |
O3—C2—C3 | 127.09 (13) | C14—C13—C12 | 108.70 (11) |
O1—C2—C3 | 116.70 (12) | C16—C13—C12 | 108.97 (11) |
C4—C3—C2 | 120.48 (12) | C17—C13—C12 | 115.72 (11) |
C4—C3—H3A | 119.8 | C15—C14—C13 | 126.59 (13) |
C2—C3—H3A | 119.8 | C15—C14—H14A | 116.7 |
C3—C4—C5 | 121.02 (13) | C13—C14—H14A | 116.7 |
C3—C4—H4A | 119.5 | C14—C15—H15A | 120.7 (12) |
C5—C4—H4A | 119.5 | C14—C15—H15B | 120.0 (12) |
C6—C5—C1 | 118.12 (12) | H15A—C15—H15B | 119.3 (17) |
C6—C5—C4 | 122.55 (12) | C13—C16—H16A | 109.5 |
C1—C5—C4 | 119.32 (12) | C13—C16—H16B | 109.5 |
O5—C6—C7 | 121.03 (12) | H16A—C16—H16B | 109.5 |
O5—C6—C5 | 119.01 (12) | C13—C16—H16C | 109.5 |
C7—C6—C5 | 119.95 (12) | H16A—C16—H16C | 109.5 |
C6—C7—C11 | 119.36 (12) | H16B—C16—H16C | 109.5 |
C6—C7—C8 | 119.95 (12) | C13—C17—H17A | 109.5 |
C11—C7—C8 | 120.64 (12) | C13—C17—H17B | 109.5 |
O4—C8—C7 | 121.72 (13) | H17A—C17—H17B | 109.5 |
O4—C8—C9 | 121.36 (12) | C13—C17—H17C | 109.5 |
C7—C8—C9 | 116.89 (12) | H17A—C17—H17C | 109.5 |
C8—C9—C10 | 111.89 (11) | H17B—C17—H17C | 109.5 |
C8—C9—H9A | 109.2 | C10—C18—H18A | 109.5 |
C10—C9—H9A | 109.2 | C10—C18—H18B | 109.5 |
C8—C9—H9B | 109.2 | H18A—C18—H18B | 109.5 |
C10—C9—H9B | 109.2 | C10—C18—H18C | 109.5 |
H9A—C9—H9B | 107.9 | H18A—C18—H18C | 109.5 |
O2—C10—C18 | 104.54 (11) | H18B—C18—H18C | 109.5 |
O2—C10—C19 | 108.64 (11) | C10—C19—H19A | 109.5 |
C18—C10—C19 | 111.23 (12) | C10—C19—H19B | 109.5 |
O2—C10—C9 | 108.37 (11) | H19A—C19—H19B | 109.5 |
C18—C10—C9 | 111.21 (12) | C10—C19—H19C | 109.5 |
C19—C10—C9 | 112.46 (11) | H19A—C19—H19C | 109.5 |
O2—C11—C12 | 117.10 (12) | H19B—C19—H19C | 109.5 |
O2—C11—C7 | 119.58 (12) | ||
C2—O1—C1—C12 | −176.20 (11) | C11—O2—C10—C19 | −68.22 (14) |
C2—O1—C1—C5 | 2.95 (18) | C11—O2—C10—C9 | 54.25 (14) |
C1—O1—C2—O3 | 175.33 (12) | C8—C9—C10—O2 | −52.54 (14) |
C1—O1—C2—C3 | −4.33 (18) | C8—C9—C10—C18 | −166.91 (11) |
O3—C2—C3—C4 | −176.61 (14) | C8—C9—C10—C19 | 67.58 (14) |
O1—C2—C3—C4 | 3.01 (19) | C10—O2—C11—C12 | 154.89 (11) |
C2—C3—C4—C5 | −0.5 (2) | C10—O2—C11—C7 | −26.57 (16) |
O1—C1—C5—C6 | 179.76 (11) | C6—C7—C11—O2 | 179.76 (11) |
C12—C1—C5—C6 | −1.2 (2) | C8—C7—C11—O2 | −3.05 (18) |
O1—C1—C5—C4 | −0.19 (18) | C6—C7—C11—C12 | −1.79 (19) |
C12—C1—C5—C4 | 178.89 (12) | C8—C7—C11—C12 | 175.40 (11) |
C3—C4—C5—C6 | 179.13 (12) | O2—C11—C12—C1 | −179.17 (10) |
C3—C4—C5—C1 | −0.9 (2) | C7—C11—C12—C1 | 2.35 (19) |
C1—C5—C6—O5 | −178.07 (11) | O2—C11—C12—C13 | 0.61 (17) |
C4—C5—C6—O5 | 1.87 (19) | C7—C11—C12—C13 | −177.87 (11) |
C1—C5—C6—C7 | 1.80 (19) | O1—C1—C12—C11 | 178.22 (10) |
C4—C5—C6—C7 | −178.26 (11) | C5—C1—C12—C11 | −0.87 (19) |
O5—C6—C7—C11 | 179.45 (11) | O1—C1—C12—C13 | −1.54 (19) |
C5—C6—C7—C11 | −0.42 (19) | C5—C1—C12—C13 | 179.37 (12) |
O5—C6—C7—C8 | 2.24 (19) | C11—C12—C13—C14 | −57.89 (15) |
C5—C6—C7—C8 | −177.63 (11) | C1—C12—C13—C14 | 121.86 (14) |
C6—C7—C8—O4 | 0.37 (19) | C11—C12—C13—C16 | 64.73 (15) |
C11—C7—C8—O4 | −176.81 (12) | C1—C12—C13—C16 | −115.52 (14) |
C6—C7—C8—C9 | 178.52 (11) | C11—C12—C13—C17 | −175.57 (12) |
C11—C7—C8—C9 | 1.35 (18) | C1—C12—C13—C17 | 4.2 (2) |
O4—C8—C9—C10 | −154.56 (12) | C16—C13—C14—C15 | 18.3 (2) |
C7—C8—C9—C10 | 27.28 (16) | C17—C13—C14—C15 | −96.71 (17) |
C11—O2—C10—C18 | 172.93 (11) | C12—C13—C14—C15 | 138.93 (16) |
Cg1 is the centroid of the C1–C5/O1ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H1O5···O4 | 0.93 (2) | 1.66 (2) | 2.5361 (14) | 155 (2) |
C9—H9B···O3i | 0.97 | 2.36 | 3.2621 (17) | 155 |
C16—H16B···O5ii | 0.96 | 2.59 | 3.4982 (17) | 159 |
C16—H16C···O2 | 0.96 | 2.34 | 2.9441 (16) | 121 |
C15—H15B···Cg1iii | 0.97 (2) | 2.83 (2) | 3.5908 (16) | 136.7 (15) |
Symmetry codes: (i) x, y−1, z; (ii) −x, −y+2, −z+2; (iii) −x+1, −y+2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C19H20O5 |
Mr | 328.35 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 10.2239 (2), 11.3090 (3), 13.8764 (3) |
β (°) | 93.108 (1) |
V (Å3) | 1602.06 (6) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.81 |
Crystal size (mm) | 0.43 × 0.43 × 0.33 |
Data collection | |
Diffractometer | Bruker APEX DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.721, 0.774 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 48432, 3114, 3088 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.147, 1.29 |
No. of reflections | 3114 |
No. of parameters | 234 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.71, −0.84 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 is the centroid of the C1–C5/O1ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H1O5···O4 | 0.93 (2) | 1.66 (2) | 2.5361 (14) | 155 (2) |
C9—H9B···O3i | 0.97 | 2.36 | 3.2621 (17) | 155 |
C16—H16B···O5ii | 0.96 | 2.59 | 3.4982 (17) | 159 |
C16—H16C···O2 | 0.96 | 2.34 | 2.9441 (16) | 121 |
C15—H15B···Cg1iii | 0.97 (2) | 2.83 (2) | 3.5908 (16) | 136.7 (15) |
Symmetry codes: (i) x, y−1, z; (ii) −x, −y+2, −z+2; (iii) −x+1, −y+2, −z+2. |
Acknowledgements
SL and TS are grateful to the Thailand Research Fund through the Royal Golden Jubilee PhD Program and Mae Fah Luang University for financial support. SC thanks the Prince of Songkla University for generous support through the Crystal Materials Research Unit. The authors also thank Universiti Sains Malaysia for the Research University Grant No. 1001/PFIZIK/811160.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Rutaceae plants are the rich sources of coumarins and carbazole alkaloids. Many of them have been isolated from several genera of Rutaceae especially from Clausena genus (Laphookhieo et al., 2009; Maneerat et al., 2010; Tangyuenyongwatthana et al., 1992) and some of these compounds show interesting pharmacological activities (Yenjai et al., 2000). During our on-going research on bioactive natural products from Thai medicinal plants, the title pyranocoumarin which known as clausenidin (Huang et al., 1997) was isolated from the roots of C. excavata which were collected from Suratthani province in the southern part of Thailand. Previous reports have found that clausenidin displayed anti-HIV-1 activity in a syncytial assay (Kongkathip et al., 2005) and cytotoxicity against four human cancer cell lines (A549, MCF7, KB and KB-VIN) (Su et al., 2009). We report herein the crystal structure of the title pyranocoumarin (I).
Fig. 1 shows that in the structure of (I), the pyran ring (C7–C11/O2) adopts an envelope conformation with the puckering atom C10 having deviation of 0.3279 (15) Å, and puckering parameters Q = 0.4648 (14) Å, θ = 123.32 (17)° and ϕ = 204.32° (Cremer & Pople, 1975). The benzene and dihydro-pyran ring system (C1–C7/C11-C12/O1) is planar with the r.m.s. 0.0190 (1) Å. The hydroxy group are planarly attached to the benzene ring. The orientation of the 2-methyl-but-3-enyl [C13–C17] side chain with respect to the benzene ring is indicated by the torsion angle of C12–C13–C14–C15 = 138.93 (16)°, indicating a (+)-anticlinal conformation (Fig. 1). Intramolecular O5—H1O5···O4 hydrogen bond (Table 1) generates an S(6) ring motif (Fig. 1 and Table 1) (Bernstein et al., 1995). The bond distances in (I) are within normal ranges (Allen et al., 1987).
The crystal packing of (I) is stabilized by intermolecular C—H···O and C—H···π weak interactions (Table 1). The molecules are linked into chains along the b axis and these chains are stacked along the a axis (Fig. 2 and Table 1). π–π interactions with the Cg1···Cg2 distance = 3.7698 (7) Å (symmetry code: -x, 2-y, 2-z) are observed; Cg1 and Cg2 are the centroids of C1–C5/O1 and C1/C5–C7/C11-C12 rings, respectively.