metal-organic compounds
(2,2′-Bipyridine-κ2N,N′)bromido(1,4,7-trithiacyclononane-κ3S,S′,S′′)ruthenium(II) hexafluoridophosphate
aDepartment of Chemistry, University of Aveiro, CICECO, 3810-193 Aveiro, Portugal
*Correspondence e-mail: filipe.paz@ua.pt
The title compound, [RuBr(C10H8N2)(C6H12S3)]PF6 or [RuBr(bpy)([9]aneS3)]PF6 ([9]aneS3 is 1,4,7-trithiacyclononane and bpy is 2,2′-bipyridine), exhibits a very similar octahedral coordination geometry for the Ru2+ atom to that of its [RuCl(bpy)([9]aneS3)]+ analogue, with only the chloride ligand being substituted by a bromide ligand. The presence of a PF6− anion (alongside with the coordinated bromide ligand) promotes the existence of an extensive network of weak C—H⋯X (X = F, Br) interactions.
Related literature
For general background to the cytotoxic activity of compounds with the {Ru[9]aneS3} moiety, see: Bratsos et al. (2008); Serli et al. (2005). For isotypic compounds based on the [RuCl(bpy)([9]aneS3)]+ cation, see: Serli et al. (2005); Goodfellow et al. (1997); Fernandes et al. (2010). For previous work from our research group on the use of related compounds, see: Marques, Braga et al. (2009); Marques, Santos et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2006); cell SAINT-Plus (Bruker, 2005); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2009); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811002662/cv5041sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811002662/cv5041Isup2.hkl
Chemicals were purchased from commercial sources and were used as received without purification.
Solid KBr (0.0945 g, 79.4 µmol, Sigma-Aldrich) was added to an aqueous solution (2 ml) of γ-cyclodextrin (0.130 g, 101 µmol, Wacker). The resulting solution was poured into a sample holder containing [RuCl([9]aneS3)bpy]PF6 (0.0248 g, 40.1 µmol). The mixture was magnetically stirred for 1 h at 60 °C. The total volume was then increased by adding 2 ml of distilled water and the temperature was also raised to 70 °C. The mixture was allowed to stir for another hour, after which it was syringe-filtered (nylon, 0.2 µm). The clear solution was allowed to crystallize by slow cooling to ambient temperature inside a sealed container. Orange crystals of the title compound were formed and isolated after two days.
Hydrogen atoms bound to carbon were placed at their idealized positions and were included in the final structural model in riding-motion approximation with C—H = 0.95 Å (aromatic C—H) and 0.99 Å (—CH2—). The isotropic thermal displacement parameters for these atoms were fixed at 1.2×Ueq of the respective parent carbon atom.
Data collection: APEX2 (Bruker, 2006); cell
SAINT-Plus (Bruker, 2005); data reduction: SAINT-Plus (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[RuBr(C10H8N2)(C6H12S3)]PF6 | F(000) = 1304 |
Mr = 662.47 | Dx = 2.057 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9897 reflections |
a = 12.0660 (7) Å | θ = 2.6–30.4° |
b = 13.4377 (8) Å | µ = 3.03 mm−1 |
c = 13.3359 (8) Å | T = 150 K |
β = 98.446 (3)° | Block, orange |
V = 2138.8 (2) Å3 | 0.16 × 0.12 × 0.10 mm |
Z = 4 |
Bruker APEXII X8 KappaCCD diffractometer | 5736 independent reflections |
Radiation source: fine-focus sealed tube | 4989 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
ω and ϕ scans | θmax = 29.1°, θmin = 3.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1998) | h = −16→13 |
Tmin = 0.643, Tmax = 0.752 | k = −14→18 |
38626 measured reflections | l = −18→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.022 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.046 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0166P)2 + 1.1306P] where P = (Fo2 + 2Fc2)/3 |
5736 reflections | (Δ/σ)max = 0.002 |
271 parameters | Δρmax = 0.52 e Å−3 |
0 restraints | Δρmin = −0.63 e Å−3 |
[RuBr(C10H8N2)(C6H12S3)]PF6 | V = 2138.8 (2) Å3 |
Mr = 662.47 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.0660 (7) Å | µ = 3.03 mm−1 |
b = 13.4377 (8) Å | T = 150 K |
c = 13.3359 (8) Å | 0.16 × 0.12 × 0.10 mm |
β = 98.446 (3)° |
Bruker APEXII X8 KappaCCD diffractometer | 5736 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1998) | 4989 reflections with I > 2σ(I) |
Tmin = 0.643, Tmax = 0.752 | Rint = 0.035 |
38626 measured reflections |
R[F2 > 2σ(F2)] = 0.022 | 0 restraints |
wR(F2) = 0.046 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.52 e Å−3 |
5736 reflections | Δρmin = −0.63 e Å−3 |
271 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ru1 | 0.833904 (11) | 0.100271 (10) | 0.308671 (10) | 0.01013 (4) | |
Br1 | 0.971376 (14) | 0.213830 (13) | 0.421622 (13) | 0.01640 (5) | |
S1 | 0.71000 (3) | 0.00388 (3) | 0.20501 (3) | 0.01421 (9) | |
S2 | 0.88870 (4) | 0.17069 (3) | 0.16651 (3) | 0.01378 (9) | |
S3 | 0.96835 (3) | −0.02031 (3) | 0.29973 (3) | 0.01433 (9) | |
N1 | 0.77196 (11) | 0.04462 (11) | 0.43571 (10) | 0.0125 (3) | |
N2 | 0.71002 (12) | 0.20371 (11) | 0.32732 (10) | 0.0126 (3) | |
C1 | 0.81031 (15) | −0.03531 (14) | 0.49059 (13) | 0.0173 (4) | |
H1 | 0.8766 | −0.0668 | 0.4760 | 0.021* | |
C2 | 0.75773 (16) | −0.07386 (15) | 0.56726 (14) | 0.0197 (4) | |
H2 | 0.7866 | −0.1313 | 0.6035 | 0.024* | |
C3 | 0.66248 (16) | −0.02759 (14) | 0.59036 (14) | 0.0195 (4) | |
H3 | 0.6240 | −0.0534 | 0.6419 | 0.023* | |
C4 | 0.62398 (15) | 0.05704 (14) | 0.53721 (13) | 0.0182 (4) | |
H4 | 0.5599 | 0.0911 | 0.5534 | 0.022* | |
C5 | 0.67964 (14) | 0.09190 (13) | 0.46003 (13) | 0.0135 (3) | |
C6 | 0.64656 (14) | 0.18211 (13) | 0.40071 (13) | 0.0128 (3) | |
C7 | 0.55971 (14) | 0.24479 (14) | 0.41964 (13) | 0.0165 (4) | |
H7 | 0.5145 | 0.2275 | 0.4696 | 0.020* | |
C8 | 0.53990 (15) | 0.33168 (14) | 0.36549 (14) | 0.0191 (4) | |
H8 | 0.4811 | 0.3750 | 0.3777 | 0.023* | |
C9 | 0.60684 (15) | 0.35527 (14) | 0.29292 (14) | 0.0186 (4) | |
H9 | 0.5958 | 0.4156 | 0.2556 | 0.022* | |
C10 | 0.68995 (15) | 0.28951 (14) | 0.27577 (13) | 0.0169 (4) | |
H10 | 0.7350 | 0.3055 | 0.2253 | 0.020* | |
C11 | 0.69306 (15) | 0.07354 (14) | 0.08615 (13) | 0.0177 (4) | |
H11A | 0.6553 | 0.0307 | 0.0311 | 0.021* | |
H11B | 0.6441 | 0.1317 | 0.0922 | 0.021* | |
C12 | 0.80353 (15) | 0.10941 (14) | 0.05783 (13) | 0.0176 (4) | |
H12A | 0.7890 | 0.1569 | 0.0006 | 0.021* | |
H12B | 0.8454 | 0.0521 | 0.0355 | 0.021* | |
C13 | 1.02665 (15) | 0.11727 (14) | 0.16039 (15) | 0.0185 (4) | |
H13A | 1.0454 | 0.1271 | 0.0913 | 0.022* | |
H13B | 1.0831 | 0.1534 | 0.2083 | 0.022* | |
C14 | 1.03368 (15) | 0.00714 (14) | 0.18570 (14) | 0.0188 (4) | |
H14A | 1.1132 | −0.0137 | 0.1976 | 0.023* | |
H14B | 0.9952 | −0.0315 | 0.1275 | 0.023* | |
C15 | 0.88524 (15) | −0.12899 (13) | 0.25441 (14) | 0.0168 (4) | |
H15A | 0.9348 | −0.1787 | 0.2289 | 0.020* | |
H15B | 0.8544 | −0.1593 | 0.3120 | 0.020* | |
C16 | 0.78971 (15) | −0.10518 (13) | 0.17114 (14) | 0.0180 (4) | |
H16A | 0.7391 | −0.1633 | 0.1596 | 0.022* | |
H16B | 0.8199 | −0.0915 | 0.1074 | 0.022* | |
P1 | 0.34992 (4) | 0.16856 (4) | 0.13197 (4) | 0.01782 (10) | |
F1 | 0.39585 (10) | 0.13350 (10) | 0.03098 (9) | 0.0359 (3) | |
F2 | 0.41610 (11) | 0.27096 (10) | 0.12942 (10) | 0.0384 (3) | |
F3 | 0.45640 (10) | 0.11898 (10) | 0.19885 (10) | 0.0372 (3) | |
F4 | 0.28321 (10) | 0.06540 (9) | 0.13318 (10) | 0.0327 (3) | |
F5 | 0.24266 (10) | 0.21698 (10) | 0.06555 (10) | 0.0367 (3) | |
F6 | 0.30399 (11) | 0.20190 (9) | 0.23321 (9) | 0.0343 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ru1 | 0.01007 (7) | 0.00943 (7) | 0.01135 (7) | 0.00047 (5) | 0.00314 (5) | −0.00005 (5) |
Br1 | 0.01564 (9) | 0.01541 (10) | 0.01780 (9) | −0.00099 (7) | 0.00133 (7) | −0.00329 (7) |
S1 | 0.0131 (2) | 0.0135 (2) | 0.0161 (2) | −0.00181 (17) | 0.00253 (16) | 0.00033 (17) |
S2 | 0.0153 (2) | 0.0123 (2) | 0.0147 (2) | −0.00110 (17) | 0.00545 (16) | 0.00033 (17) |
S3 | 0.0128 (2) | 0.0124 (2) | 0.0185 (2) | 0.00123 (17) | 0.00418 (16) | 0.00010 (18) |
N1 | 0.0130 (7) | 0.0127 (8) | 0.0120 (7) | 0.0009 (6) | 0.0023 (5) | −0.0006 (6) |
N2 | 0.0132 (7) | 0.0121 (8) | 0.0123 (7) | 0.0007 (6) | 0.0017 (5) | −0.0012 (6) |
C1 | 0.0190 (9) | 0.0166 (10) | 0.0163 (9) | 0.0032 (8) | 0.0022 (7) | 0.0006 (7) |
C2 | 0.0264 (10) | 0.0165 (10) | 0.0160 (9) | 0.0005 (8) | 0.0027 (7) | 0.0036 (8) |
C3 | 0.0252 (10) | 0.0192 (10) | 0.0155 (9) | −0.0027 (8) | 0.0073 (7) | 0.0021 (8) |
C4 | 0.0184 (9) | 0.0188 (10) | 0.0183 (9) | 0.0003 (8) | 0.0061 (7) | −0.0009 (8) |
C5 | 0.0141 (8) | 0.0131 (9) | 0.0130 (8) | −0.0011 (7) | 0.0013 (6) | −0.0028 (7) |
C6 | 0.0118 (8) | 0.0142 (9) | 0.0122 (8) | −0.0008 (7) | 0.0008 (6) | −0.0019 (7) |
C7 | 0.0138 (8) | 0.0198 (10) | 0.0167 (9) | 0.0007 (7) | 0.0047 (7) | −0.0016 (8) |
C8 | 0.0175 (9) | 0.0193 (10) | 0.0202 (9) | 0.0074 (8) | 0.0021 (7) | −0.0022 (8) |
C9 | 0.0234 (9) | 0.0144 (9) | 0.0174 (9) | 0.0047 (8) | 0.0013 (7) | 0.0020 (7) |
C10 | 0.0186 (9) | 0.0169 (10) | 0.0160 (9) | 0.0014 (7) | 0.0051 (7) | 0.0012 (7) |
C11 | 0.0187 (9) | 0.0181 (10) | 0.0154 (9) | −0.0013 (8) | −0.0011 (7) | 0.0017 (8) |
C12 | 0.0206 (9) | 0.0185 (10) | 0.0137 (9) | −0.0014 (8) | 0.0026 (7) | −0.0004 (7) |
C13 | 0.0152 (8) | 0.0183 (10) | 0.0239 (10) | −0.0026 (8) | 0.0093 (7) | −0.0004 (8) |
C14 | 0.0174 (9) | 0.0177 (10) | 0.0237 (10) | 0.0007 (8) | 0.0108 (7) | −0.0011 (8) |
C15 | 0.0207 (9) | 0.0094 (9) | 0.0214 (9) | 0.0014 (7) | 0.0067 (7) | 0.0001 (7) |
C16 | 0.0217 (9) | 0.0110 (9) | 0.0215 (10) | −0.0013 (7) | 0.0036 (7) | −0.0031 (7) |
P1 | 0.0179 (2) | 0.0200 (3) | 0.0164 (2) | −0.0014 (2) | 0.00541 (18) | 0.0004 (2) |
F1 | 0.0393 (7) | 0.0464 (8) | 0.0265 (7) | −0.0168 (6) | 0.0197 (5) | −0.0138 (6) |
F2 | 0.0476 (8) | 0.0305 (7) | 0.0366 (7) | −0.0212 (6) | 0.0052 (6) | −0.0047 (6) |
F3 | 0.0240 (6) | 0.0488 (8) | 0.0377 (7) | 0.0119 (6) | 0.0007 (5) | 0.0029 (6) |
F4 | 0.0318 (7) | 0.0226 (6) | 0.0474 (8) | −0.0071 (5) | 0.0185 (6) | 0.0020 (6) |
F5 | 0.0310 (7) | 0.0393 (8) | 0.0368 (7) | 0.0034 (6) | −0.0051 (6) | 0.0124 (6) |
F6 | 0.0441 (7) | 0.0375 (8) | 0.0246 (6) | 0.0123 (6) | 0.0157 (6) | −0.0023 (6) |
Ru1—N1 | 2.0881 (14) | C7—H7 | 0.9500 |
Ru1—N2 | 2.0826 (14) | C8—C9 | 1.385 (3) |
Ru1—S1 | 2.2840 (5) | C8—H8 | 0.9500 |
Ru1—S2 | 2.3011 (4) | C9—C10 | 1.381 (3) |
Ru1—S3 | 2.3083 (5) | C9—H9 | 0.9500 |
Ru1—Br1 | 2.5720 (2) | C10—H10 | 0.9500 |
S1—C11 | 1.8264 (18) | C11—C12 | 1.516 (2) |
S1—C16 | 1.8451 (18) | C11—H11A | 0.9900 |
S2—C13 | 1.8255 (18) | C11—H11B | 0.9900 |
S2—C12 | 1.8432 (18) | C12—H12A | 0.9900 |
S3—C15 | 1.8236 (19) | C12—H12B | 0.9900 |
S3—C14 | 1.8499 (17) | C13—C14 | 1.517 (3) |
N1—C1 | 1.343 (2) | C13—H13A | 0.9900 |
N1—C5 | 1.362 (2) | C13—H13B | 0.9900 |
N2—C10 | 1.346 (2) | C14—H14A | 0.9900 |
N2—C6 | 1.360 (2) | C14—H14B | 0.9900 |
C1—C2 | 1.381 (2) | C15—C16 | 1.513 (3) |
C1—H1 | 0.9500 | C15—H15A | 0.9900 |
C2—C3 | 1.381 (3) | C15—H15B | 0.9900 |
C2—H2 | 0.9500 | C16—H16A | 0.9900 |
C3—C4 | 1.384 (3) | C16—H16B | 0.9900 |
C3—H3 | 0.9500 | P1—F2 | 1.5938 (13) |
C4—C5 | 1.390 (2) | P1—F5 | 1.5956 (13) |
C4—H4 | 0.9500 | P1—F6 | 1.5970 (12) |
C5—C6 | 1.470 (2) | P1—F3 | 1.5980 (13) |
C6—C7 | 1.396 (2) | P1—F1 | 1.6007 (12) |
C7—C8 | 1.375 (3) | P1—F4 | 1.6043 (12) |
N2—Ru1—N1 | 78.08 (5) | C8—C9—H9 | 120.6 |
N2—Ru1—S1 | 91.91 (4) | N2—C10—C9 | 122.97 (16) |
N1—Ru1—S1 | 90.43 (4) | N2—C10—H10 | 118.5 |
N2—Ru1—S2 | 97.01 (4) | C9—C10—H10 | 118.5 |
S1—Ru1—S2 | 88.644 (16) | C12—C11—S1 | 112.87 (13) |
N1—Ru1—S3 | 97.38 (4) | C12—C11—H11A | 109.0 |
S1—Ru1—S3 | 88.460 (17) | S1—C11—H11A | 109.0 |
S2—Ru1—S3 | 87.533 (16) | C12—C11—H11B | 109.0 |
N2—Ru1—Br1 | 86.93 (4) | S1—C11—H11B | 109.0 |
N1—Ru1—Br1 | 90.81 (4) | H11A—C11—H11B | 107.8 |
S2—Ru1—Br1 | 89.993 (13) | C11—C12—S2 | 110.80 (12) |
S3—Ru1—Br1 | 92.811 (13) | C11—C12—H12A | 109.5 |
N1—Ru1—S2 | 174.97 (4) | S2—C12—H12A | 109.5 |
N2—Ru1—S3 | 175.45 (4) | C11—C12—H12B | 109.5 |
S1—Ru1—Br1 | 178.095 (13) | S2—C12—H12B | 109.5 |
C11—S1—C16 | 100.98 (9) | H12A—C12—H12B | 108.1 |
C11—S1—Ru1 | 102.38 (6) | C14—C13—S2 | 113.27 (12) |
C16—S1—Ru1 | 106.28 (6) | C14—C13—H13A | 108.9 |
C13—S2—C12 | 101.30 (9) | S2—C13—H13A | 108.9 |
C13—S2—Ru1 | 104.44 (6) | C14—C13—H13B | 108.9 |
C12—S2—Ru1 | 105.64 (6) | S2—C13—H13B | 108.9 |
C15—S3—C14 | 99.63 (8) | H13A—C13—H13B | 107.7 |
C15—S3—Ru1 | 102.88 (6) | C13—C14—S3 | 111.14 (12) |
C14—S3—Ru1 | 106.86 (6) | C13—C14—H14A | 109.4 |
C1—N1—C5 | 118.13 (14) | S3—C14—H14A | 109.4 |
C1—N1—Ru1 | 126.36 (11) | C13—C14—H14B | 109.4 |
C5—N1—Ru1 | 115.39 (11) | S3—C14—H14B | 109.4 |
C10—N2—C6 | 118.19 (15) | H14A—C14—H14B | 108.0 |
C10—N2—Ru1 | 126.09 (11) | C16—C15—S3 | 113.37 (13) |
C6—N2—Ru1 | 115.69 (11) | C16—C15—H15A | 108.9 |
N1—C1—C2 | 122.99 (17) | S3—C15—H15A | 108.9 |
N1—C1—H1 | 118.5 | C16—C15—H15B | 108.9 |
C2—C1—H1 | 118.5 | S3—C15—H15B | 108.9 |
C3—C2—C1 | 118.96 (18) | H15A—C15—H15B | 107.7 |
C3—C2—H2 | 120.5 | C15—C16—S1 | 110.89 (12) |
C1—C2—H2 | 120.5 | C15—C16—H16A | 109.5 |
C2—C3—C4 | 118.92 (16) | S1—C16—H16A | 109.5 |
C2—C3—H3 | 120.5 | C15—C16—H16B | 109.5 |
C4—C3—H3 | 120.5 | S1—C16—H16B | 109.5 |
C3—C4—C5 | 119.58 (17) | H16A—C16—H16B | 108.0 |
C3—C4—H4 | 120.2 | F2—P1—F5 | 90.24 (7) |
C5—C4—H4 | 120.2 | F2—P1—F6 | 90.75 (7) |
N1—C5—C4 | 121.33 (16) | F5—P1—F6 | 90.06 (7) |
N1—C5—C6 | 115.04 (14) | F2—P1—F3 | 90.43 (8) |
C4—C5—C6 | 123.61 (16) | F5—P1—F3 | 179.30 (8) |
N2—C6—C7 | 121.23 (16) | F6—P1—F3 | 89.74 (7) |
N2—C6—C5 | 115.22 (14) | F2—P1—F1 | 89.98 (7) |
C7—C6—C5 | 123.49 (15) | F5—P1—F1 | 90.33 (7) |
C8—C7—C6 | 119.64 (16) | F6—P1—F1 | 179.17 (8) |
C8—C7—H7 | 120.2 | F3—P1—F1 | 89.86 (7) |
C6—C7—H7 | 120.2 | F2—P1—F4 | 179.36 (7) |
C7—C8—C9 | 119.13 (17) | F5—P1—F4 | 89.46 (7) |
C7—C8—H8 | 120.4 | F6—P1—F4 | 89.83 (7) |
C9—C8—H8 | 120.4 | F3—P1—F4 | 89.86 (7) |
C10—C9—C8 | 118.78 (17) | F1—P1—F4 | 89.45 (7) |
C10—C9—H9 | 120.6 | ||
N2—Ru1—S1—C11 | 75.99 (7) | Ru1—N1—C1—C2 | −173.00 (14) |
N1—Ru1—S1—C11 | 154.07 (7) | N1—C1—C2—C3 | −1.2 (3) |
S2—Ru1—S1—C11 | −20.99 (6) | C1—C2—C3—C4 | −1.2 (3) |
S3—Ru1—S1—C11 | −108.55 (6) | C2—C3—C4—C5 | 1.9 (3) |
N2—Ru1—S1—C16 | −178.51 (7) | C1—N1—C5—C4 | −2.1 (2) |
N1—Ru1—S1—C16 | −100.42 (7) | Ru1—N1—C5—C4 | 174.23 (13) |
S2—Ru1—S1—C16 | 84.52 (6) | C1—N1—C5—C6 | 176.53 (15) |
S3—Ru1—S1—C16 | −3.05 (6) | Ru1—N1—C5—C6 | −7.18 (19) |
N2—Ru1—S2—C13 | 161.69 (8) | C3—C4—C5—N1 | −0.3 (3) |
S1—Ru1—S2—C13 | −106.56 (7) | C3—C4—C5—C6 | −178.74 (17) |
S3—Ru1—S2—C13 | −18.04 (7) | C10—N2—C6—C7 | 2.6 (2) |
Br1—Ru1—S2—C13 | 74.78 (6) | Ru1—N2—C6—C7 | −179.04 (13) |
N2—Ru1—S2—C12 | −91.93 (7) | C10—N2—C6—C5 | −174.73 (15) |
S1—Ru1—S2—C12 | −0.17 (6) | Ru1—N2—C6—C5 | 3.59 (19) |
S3—Ru1—S2—C12 | 88.35 (6) | N1—C5—C6—N2 | 2.4 (2) |
Br1—Ru1—S2—C12 | −178.84 (6) | C4—C5—C6—N2 | −179.06 (16) |
N1—Ru1—S3—C15 | 72.45 (7) | N1—C5—C6—C7 | −174.92 (16) |
S1—Ru1—S3—C15 | −17.78 (6) | C4—C5—C6—C7 | 3.6 (3) |
S2—Ru1—S3—C15 | −106.49 (6) | N2—C6—C7—C8 | −2.1 (3) |
Br1—Ru1—S3—C15 | 163.64 (6) | C5—C6—C7—C8 | 175.04 (17) |
N1—Ru1—S3—C14 | 176.84 (8) | C6—C7—C8—C9 | 0.0 (3) |
S1—Ru1—S3—C14 | 86.61 (7) | C7—C8—C9—C10 | 1.4 (3) |
S2—Ru1—S3—C14 | −2.10 (7) | C6—N2—C10—C9 | −1.2 (3) |
Br1—Ru1—S3—C14 | −91.97 (7) | Ru1—N2—C10—C9 | −179.30 (14) |
N2—Ru1—N1—C1 | −177.12 (15) | C8—C9—C10—N2 | −0.8 (3) |
S1—Ru1—N1—C1 | 91.02 (14) | C16—S1—C11—C12 | −64.36 (15) |
S3—Ru1—N1—C1 | 2.51 (15) | Ru1—S1—C11—C12 | 45.21 (14) |
Br1—Ru1—N1—C1 | −90.43 (14) | S1—C11—C12—S2 | −48.58 (17) |
N2—Ru1—N1—C5 | 6.94 (12) | C13—S2—C12—C11 | 135.80 (13) |
S1—Ru1—N1—C5 | −84.92 (12) | Ru1—S2—C12—C11 | 27.14 (14) |
S3—Ru1—N1—C5 | −173.42 (11) | C12—S2—C13—C14 | −68.39 (15) |
Br1—Ru1—N1—C5 | 93.64 (12) | Ru1—S2—C13—C14 | 41.20 (15) |
N1—Ru1—N2—C10 | 172.54 (15) | S2—C13—C14—S3 | −45.34 (17) |
S1—Ru1—N2—C10 | −97.42 (14) | C15—S3—C14—C13 | 133.84 (14) |
S2—Ru1—N2—C10 | −8.56 (15) | Ru1—S3—C14—C13 | 27.13 (15) |
Br1—Ru1—N2—C10 | 81.06 (14) | C14—S3—C15—C16 | −67.85 (14) |
N1—Ru1—N2—C6 | −5.62 (12) | Ru1—S3—C15—C16 | 42.06 (13) |
S1—Ru1—N2—C6 | 84.42 (12) | S3—C15—C16—S1 | −47.66 (15) |
S2—Ru1—N2—C6 | 173.28 (11) | C11—S1—C16—C15 | 135.46 (13) |
Br1—Ru1—N2—C6 | −97.10 (12) | Ru1—S1—C16—C15 | 28.95 (13) |
C5—N1—C1—C2 | 2.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···Br1i | 0.95 | 2.90 | 3.6274 (19) | 135 |
C8—H8···F1ii | 0.95 | 2.42 | 3.039 (2) | 122 |
C11—H11A···F1iii | 0.99 | 2.41 | 3.292 (2) | 149 |
C15—H15A···Br1iv | 0.99 | 2.84 | 3.7627 (18) | 156 |
C16—H16A···F6v | 0.99 | 2.41 | 3.170 (2) | 133 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) x, −y+1/2, z+1/2; (iii) −x+1, −y, −z; (iv) −x+2, y−1/2, −z+1/2; (v) −x+1, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [RuBr(C10H8N2)(C6H12S3)]PF6 |
Mr | 662.47 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 150 |
a, b, c (Å) | 12.0660 (7), 13.4377 (8), 13.3359 (8) |
β (°) | 98.446 (3) |
V (Å3) | 2138.8 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 3.03 |
Crystal size (mm) | 0.16 × 0.12 × 0.10 |
Data collection | |
Diffractometer | Bruker APEXII X8 KappaCCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1998) |
Tmin, Tmax | 0.643, 0.752 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 38626, 5736, 4989 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.685 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.022, 0.046, 1.06 |
No. of reflections | 5736 |
No. of parameters | 271 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.52, −0.63 |
Computer programs: APEX2 (Bruker, 2006), SAINT-Plus (Bruker, 2005), SHELXTL (Sheldrick, 2008), DIAMOND (Brandenburg, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···Br1i | 0.95 | 2.90 | 3.6274 (19) | 135 |
C8—H8···F1ii | 0.95 | 2.42 | 3.039 (2) | 122 |
C11—H11A···F1iii | 0.99 | 2.41 | 3.292 (2) | 149 |
C15—H15A···Br1iv | 0.99 | 2.84 | 3.7627 (18) | 156 |
C16—H16A···F6v | 0.99 | 2.41 | 3.170 (2) | 133 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) x, −y+1/2, z+1/2; (iii) −x+1, −y, −z; (iv) −x+2, y−1/2, −z+1/2; (v) −x+1, y−1/2, −z+1/2. |
Acknowledgements
We are grateful to the Fundação para a Ciência e a Tecnologia (FCT, Portugal) for their general financial support (R&D project PTDC/QUI/69302/2006), for the post-doctoral research grant No. SFRH/BPD/63736/2009 (to JAF) and for specific funding toward the purchase of the single-crystal diffractometer.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The cytotoxic potential of ruthenium coordination complexes containing 1,4,7-trithiacyclononane ([9]aneS3) is under study since 2005 (Bratsos et al., 2008; Serli et al., 2005). We have investigated the cytotoxicity of the [RuCl(glycinate)([9]aneS3)] complex on human osteosarcoma and breast cancer cells (Marques, Santos et al., 2009), and the antimicrobial properties of the [RuCl(1,10-phenanthroline)([9]aneS3)]Cl complex and its β- and permethylated β-cyclodextrin inclusion compounds (Marques, Braga et al., 2009). We are currently focused on complexes with ([9]aneS3)Ru while bearing N,N-chelated 2,2'-bipyridine (bpy). Recently, we have successfully isolated the monohydrate form of the [RuCl(bpy)([9]aneS3)]NO3 compound (Fernandes et al., 2010). We wish to report here the structure of [RuBr(bpy)([9]aneS3)]PF6, isolated as a secondary product from a crystallization batch containing (among other entities) KBr.
The asymmetric unit of the title compound is composed of a whole [RuBr(bpy)([9]aneS3)]+ cation and a charge-balancing PF6- anion. The cation of the title compound shares striking similarities with its [RuCl(bpy)([9]aneS3)]+ analogue (Serli et al., 2005; Goodfellow et al., 1997; Fernandes et al., 2010), with comparable bond lengths and angles of the coordination environments of Ru2+. The difference resides in the substitution of the chlorido ligand by a bromido one, with the Ru1—Br1 distance being enlongated to 2.5720 (2) Å.
The crystal packing is governed by the need to fill the available space and an overall minimization of the interionic distances (Figure 2). Nevertheless, a handful of weak hydrogen bonding interactions is present, namely C—H groups (both aromatic and methylene) interacting with Br and F of neighbouring ions (not shown; see Table 1 for details). Indeed, the existence of several C—H···F interactions seems to be the structural reason for the absence of the disorder typically associated with the PF6- anion.