organic compounds
2,2′-(p-Phenylene)bis(4,5-dihydro-1H-imidazol-3-ium) bis(3-nitrobenzoate)
aSchool of Chemical and Material Engineering, Jiangnan University, 1800 Lihu Road, Wuxi, Jiangsu Province 214122, People's Republic of China, and bCollege of Pharmacy, GuangDong Pharmaceutical University, Guangzhou, Guangdong Province 510006, People's Republic of China
*Correspondence e-mail: chunxiaren@yahoo.com.cn, smshang@126.com
In the title compound, C12H16N4+·2C7H4NO4−, the complete 2,2′-(p-phenylene)bis(4,5-dihydro-1H-imidazol-3-ium) (bib) dication is generated by crystallographic inversion symmetry. The bib cations reside on crystallographic inversion centers, which coincide with the centroids of the respective benzene rings. In the cation, the imidazole ring adopts an envelop conformation with the flap atom displaced by 0.082 (3) Å from the plane through the other ring atoms. In the crystal, the cations and anions are linked through intermolecular N—H⋯O hydrogen bonds, forming chains running along the a axis. C—H⋯O interactions also occur. Weak π–π contacts between the imidazole rings of bib and between the benzene rings of NB [centroid–centroid distances = 3.501 (1) and 3.281 (2) Å, respectively] may further stabilize the structure.
Related literature
For general background to supramolecular interactions, see: Jeffrey (1997). For the structures of metal complexes with imidazole ligands reported by our group, see: Ren, Ye, He et al. (2004); Ren, Ye, Zhu et al. (2004); Ren et al. (2007, 2009).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536810053341/ds2078sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810053341/ds2078Isup2.hkl
All the reagents and solvents employed were commercially available and used as received without further purification.
Syntheses of 1,4-bis(4,5-dihydro-1H-imidazol-2-yl)benzene: a mixture of 1,4-Benzenedicarboxylic acid (2.31 g, 13.9 mmol), ethylenediamine (3.70 ml, 50 mmol), ethylenediamine dihydrochloride(6.64 g, 50 mmol) and toluene-p-sulfonic acid (0.208 g, 1.09 mmol) in ethyleneglycol (20 ml) was refluxed at 198/%C for 3 h. Then about half of the ethylene glycol solvent was then slowly removed by distillation at 120 /%C. The residue was dissolved in a mixture of water (40 ml) and concentrated hydrochloric acid (11 M, 3 ml). The addition of 50% aqueous sodium hydroxide gave a yellow precipitate that was recrystallized by methonal (yield 83% based on 1,4-benzenedicarboxylic acid (ca 2.50 g). Calc. for C12H14N4: C 67.27; H 6.59; N 26.15%. Found: C 66.98; H 6.92; N 26.08%. IR (KBr, cm-1): 3188(m), 2936(m), 2866(m), 1606(s), 1532(s), 1466(s), 1345(m), 1270(s), 1191(w), 1080(w), 981(m), 855(m).
Syntheses of the title compound: to a solution of 1,4-bis(4,5-dihydro-1H-imidazol-2-yl)benzene (0.0109 g, 0.05 mmol) in methonal (1 ml), an acetonitrile solution (1 ml) of 3-nitrobenzoic acid (0.0069 g, 0.06 mmol) was added and stirred 10 min at room temperature. The solution was allowed at room temperature in 10 ml diethyl diether for 25 h by slow evaporation. Colorless prismatic crystals of the title compound were obtained, which were collected by filtration, washed with water and dried in vacuum desiccator over silica gel (0.0095 g, 41%). IR (KBr,cm-1): 3436(s), 3080(w), 2924(m), 1618(s), 1560(m), 1524(s), 1383(s), 1370(s), 1351(s), 1282(m), 720(m), 696(w).
Anisotropic thermal parameters were applied to all nonhydrogen atoms. The organic hydrogen atoms attached to C atoms and N atom were fixed geometrically and treated as riding with C—H = 0.93 Å (aromatic) or 0.97 Å (methylene) and N—H = 0.86 Å with Uiso(H) = 1.2 Ueq(C or N). Rigid bond restraint instruction DELU was applied to improve the anisotropic displacement parameters involving N3 and C12.
Data collection: SMART (Bruker, 1998); cell
SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C12H16N42+·2C7H4NO4− | V = 600.96 (17) Å3 |
Mr = 548.51 | Z = 1 |
Triclinic, P1 | F(000) = 286 |
Hall symbol: -P 1 | Dx = 1.516 Mg m−3 |
a = 6.9882 (12) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 7.4165 (12) Å | µ = 0.12 mm−1 |
c = 13.233 (2) Å | T = 273 K |
α = 81.343 (3)° | Block, colorless |
β = 82.443 (3)° | 0.67 × 0.55 × 0.42 mm |
γ = 62.699 (2)° |
Bruker SMART APEX CCD area-detector diffractometer | 2575 independent reflections |
Radiation source: fine-focus sealed tube | 1676 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.016 |
ϕ and ω scans | θmax = 27.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −8→8 |
Tmin = 0.927, Tmax = 0.953 | k = −9→9 |
3714 measured reflections | l = −16→8 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.053 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.151 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0613P)2 + 0.1694P] where P = (Fo2 + 2Fc2)/3 |
2575 reflections | (Δ/σ)max < 0.001 |
181 parameters | Δρmax = 0.20 e Å−3 |
1 restraint | Δρmin = −0.28 e Å−3 |
C12H16N42+·2C7H4NO4− | γ = 62.699 (2)° |
Mr = 548.51 | V = 600.96 (17) Å3 |
Triclinic, P1 | Z = 1 |
a = 6.9882 (12) Å | Mo Kα radiation |
b = 7.4165 (12) Å | µ = 0.12 mm−1 |
c = 13.233 (2) Å | T = 273 K |
α = 81.343 (3)° | 0.67 × 0.55 × 0.42 mm |
β = 82.443 (3)° |
Bruker SMART APEX CCD area-detector diffractometer | 2575 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 1676 reflections with I > 2σ(I) |
Tmin = 0.927, Tmax = 0.953 | Rint = 0.016 |
3714 measured reflections |
R[F2 > 2σ(F2)] = 0.053 | 1 restraint |
wR(F2) = 0.151 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.20 e Å−3 |
2575 reflections | Δρmin = −0.28 e Å−3 |
181 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.7607 (4) | 0.1903 (4) | 0.18562 (17) | 0.0483 (6) | |
H1A | 0.7398 | 0.2592 | 0.2458 | 0.058* | |
H1B | 0.6839 | 0.1075 | 0.1981 | 0.058* | |
C2 | 0.6871 (4) | 0.3430 (3) | 0.09029 (18) | 0.0492 (6) | |
H2A | 0.5961 | 0.3147 | 0.0521 | 0.059* | |
H2B | 0.6093 | 0.4820 | 0.1083 | 0.059* | |
C3 | 1.0544 (3) | 0.1481 (3) | 0.07401 (15) | 0.0383 (5) | |
C4 | 1.2831 (3) | 0.0707 (3) | 0.03509 (15) | 0.0373 (5) | |
C5 | 1.3404 (3) | 0.1420 (3) | −0.06192 (15) | 0.0414 (5) | |
H5 | 1.2337 | 0.2373 | −0.1034 | 0.050* | |
C6 | 1.5554 (4) | 0.0716 (3) | −0.09660 (15) | 0.0416 (5) | |
H6 | 1.5925 | 0.1195 | −0.1615 | 0.050* | |
C7 | 0.1900 (4) | 0.5421 (5) | 0.2448 (2) | 0.0620 (8) | |
C8 | 0.2163 (3) | 0.3932 (3) | 0.33993 (16) | 0.0437 (5) | |
C9 | 0.1925 (4) | 0.2191 (4) | 0.33805 (19) | 0.0529 (6) | |
H9 | 0.1691 | 0.1887 | 0.2765 | 0.064* | |
C10 | 0.2027 (4) | 0.0885 (4) | 0.4264 (2) | 0.0639 (7) | |
H10 | 0.1849 | −0.0275 | 0.4239 | 0.077* | |
C11 | 0.2391 (4) | 0.1307 (4) | 0.5170 (2) | 0.0620 (7) | |
H11 | 0.2445 | 0.0452 | 0.5769 | 0.074* | |
C12 | 0.2671 (3) | 0.3009 (4) | 0.51797 (16) | 0.0507 (6) | |
C13 | 0.2561 (3) | 0.4345 (3) | 0.43168 (17) | 0.0462 (5) | |
H13 | 0.2750 | 0.5497 | 0.4350 | 0.055* | |
N1 | 0.8925 (3) | 0.3081 (3) | 0.03187 (14) | 0.0482 (5) | |
H1 | 0.9055 | 0.3822 | −0.0226 | 0.058* | |
N2 | 0.9901 (3) | 0.0671 (3) | 0.15833 (13) | 0.0438 (5) | |
H2 | 1.0721 | −0.0439 | 0.1930 | 0.053* | |
N3 | 0.3060 (4) | 0.3471 (5) | 0.61616 (18) | 0.0776 (8) | |
O1 | 0.1555 (3) | 0.4959 (3) | 0.16467 (14) | 0.0884 (7) | |
O2 | 0.2025 (3) | 0.7013 (3) | 0.25649 (18) | 0.0916 (8) | |
O3 | 0.3241 (4) | 0.5037 (6) | 0.6153 (2) | 0.1100 (10) | |
O4 | 0.3135 (4) | 0.2288 (5) | 0.69216 (16) | 0.1205 (11) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0495 (13) | 0.0543 (13) | 0.0410 (12) | −0.0242 (11) | −0.0023 (10) | −0.0025 (10) |
C2 | 0.0456 (13) | 0.0468 (12) | 0.0473 (13) | −0.0152 (10) | −0.0034 (10) | −0.0009 (10) |
C3 | 0.0477 (12) | 0.0387 (10) | 0.0286 (10) | −0.0187 (9) | −0.0089 (9) | −0.0010 (8) |
C4 | 0.0446 (12) | 0.0356 (10) | 0.0298 (10) | −0.0160 (9) | −0.0068 (8) | −0.0011 (8) |
C5 | 0.0472 (12) | 0.0380 (11) | 0.0323 (11) | −0.0142 (9) | −0.0099 (9) | 0.0053 (8) |
C6 | 0.0516 (13) | 0.0424 (11) | 0.0273 (10) | −0.0197 (10) | −0.0045 (9) | 0.0040 (8) |
C7 | 0.0410 (13) | 0.0717 (18) | 0.0494 (16) | −0.0137 (12) | −0.0021 (11) | 0.0233 (13) |
C8 | 0.0359 (11) | 0.0477 (12) | 0.0367 (12) | −0.0129 (9) | −0.0031 (9) | 0.0074 (9) |
C9 | 0.0513 (14) | 0.0599 (15) | 0.0463 (14) | −0.0226 (11) | −0.0085 (11) | −0.0052 (11) |
C10 | 0.0610 (16) | 0.0510 (14) | 0.080 (2) | −0.0292 (13) | −0.0097 (14) | 0.0104 (13) |
C11 | 0.0513 (15) | 0.0686 (17) | 0.0530 (16) | −0.0235 (13) | −0.0059 (12) | 0.0225 (13) |
C12 | 0.0350 (12) | 0.0701 (16) | 0.0336 (12) | −0.0131 (11) | −0.0033 (9) | −0.0013 (11) |
C13 | 0.0362 (11) | 0.0487 (12) | 0.0484 (13) | −0.0153 (10) | −0.0014 (9) | −0.0037 (10) |
N1 | 0.0481 (11) | 0.0478 (10) | 0.0372 (10) | −0.0146 (9) | −0.0047 (8) | 0.0072 (8) |
N2 | 0.0464 (10) | 0.0434 (10) | 0.0365 (10) | −0.0181 (8) | −0.0060 (8) | 0.0062 (8) |
N3 | 0.0438 (13) | 0.124 (2) | 0.0481 (14) | −0.0212 (14) | −0.0029 (10) | −0.0174 (15) |
O1 | 0.0837 (14) | 0.1023 (16) | 0.0365 (10) | −0.0115 (12) | −0.0080 (9) | 0.0177 (10) |
O2 | 0.0766 (14) | 0.0759 (14) | 0.1167 (19) | −0.0418 (12) | −0.0346 (12) | 0.0561 (13) |
O3 | 0.0816 (17) | 0.173 (3) | 0.0934 (19) | −0.0593 (18) | 0.0042 (13) | −0.0671 (19) |
O4 | 0.0984 (18) | 0.183 (3) | 0.0363 (12) | −0.0305 (18) | −0.0134 (11) | 0.0122 (15) |
C1—N2 | 1.462 (3) | C7—O2 | 1.257 (4) |
C1—C2 | 1.531 (3) | C7—C8 | 1.514 (3) |
C1—H1A | 0.9700 | C8—C9 | 1.380 (3) |
C1—H1B | 0.9700 | C8—C13 | 1.387 (3) |
C2—N1 | 1.468 (3) | C9—C10 | 1.388 (3) |
C2—H2A | 0.9700 | C9—H9 | 0.9300 |
C2—H2B | 0.9700 | C10—C11 | 1.367 (4) |
C3—N2 | 1.312 (3) | C10—H10 | 0.9300 |
C3—N1 | 1.317 (3) | C11—C12 | 1.366 (4) |
C3—C4 | 1.476 (3) | C11—H11 | 0.9300 |
C4—C6i | 1.393 (3) | C12—C13 | 1.380 (3) |
C4—C5 | 1.394 (3) | C12—N3 | 1.481 (3) |
C5—C6 | 1.383 (3) | C13—H13 | 0.9300 |
C5—H5 | 0.9300 | N1—H1 | 0.8600 |
C6—C4i | 1.393 (3) | N2—H2 | 0.8600 |
C6—H6 | 0.9300 | N3—O4 | 1.221 (3) |
C7—O1 | 1.246 (4) | N3—O3 | 1.222 (4) |
N2—C1—C2 | 102.53 (17) | C9—C8—C13 | 118.9 (2) |
N2—C1—H1A | 111.3 | C9—C8—C7 | 120.8 (2) |
C2—C1—H1A | 111.3 | C13—C8—C7 | 120.2 (2) |
N2—C1—H1B | 111.3 | C8—C9—C10 | 121.2 (2) |
C2—C1—H1B | 111.3 | C8—C9—H9 | 119.4 |
H1A—C1—H1B | 109.2 | C10—C9—H9 | 119.4 |
N1—C2—C1 | 102.37 (17) | C11—C10—C9 | 119.9 (2) |
N1—C2—H2A | 111.3 | C11—C10—H10 | 120.1 |
C1—C2—H2A | 111.3 | C9—C10—H10 | 120.1 |
N1—C2—H2B | 111.3 | C12—C11—C10 | 118.7 (2) |
C1—C2—H2B | 111.3 | C12—C11—H11 | 120.7 |
H2A—C2—H2B | 109.2 | C10—C11—H11 | 120.7 |
N2—C3—N1 | 111.85 (19) | C11—C12—C13 | 122.8 (2) |
N2—C3—C4 | 122.98 (18) | C11—C12—N3 | 118.7 (2) |
N1—C3—C4 | 125.13 (18) | C13—C12—N3 | 118.4 (3) |
C6i—C4—C5 | 119.30 (19) | C12—C13—C8 | 118.5 (2) |
C6i—C4—C3 | 119.93 (18) | C12—C13—H13 | 120.7 |
C5—C4—C3 | 120.75 (18) | C8—C13—H13 | 120.7 |
C6—C5—C4 | 120.20 (19) | C3—N1—C2 | 110.95 (18) |
C6—C5—H5 | 119.9 | C3—N1—H1 | 124.5 |
C4—C5—H5 | 119.9 | C2—N1—H1 | 124.5 |
C5—C6—C4i | 120.50 (19) | C3—N2—C1 | 111.14 (17) |
C5—C6—H6 | 119.7 | C3—N2—H2 | 124.4 |
C4i—C6—H6 | 119.7 | C1—N2—H2 | 124.4 |
O1—C7—O2 | 127.2 (2) | O4—N3—O3 | 124.9 (3) |
O1—C7—C8 | 117.2 (3) | O4—N3—C12 | 117.8 (3) |
O2—C7—C8 | 115.6 (3) | O3—N3—C12 | 117.3 (3) |
Symmetry code: (i) −x+3, −y, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···O2ii | 0.93 | 2.48 | 3.283 (3) | 144 |
N1—H1···O1iii | 0.86 | 1.97 | 2.763 (3) | 153 |
N2—H2···O2iv | 0.86 | 1.80 | 2.646 (3) | 166 |
Symmetry codes: (ii) −x+2, −y+1, −z; (iii) −x+1, −y+1, −z; (iv) x+1, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C12H16N42+·2C7H4NO4− |
Mr | 548.51 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 273 |
a, b, c (Å) | 6.9882 (12), 7.4165 (12), 13.233 (2) |
α, β, γ (°) | 81.343 (3), 82.443 (3), 62.699 (2) |
V (Å3) | 600.96 (17) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.67 × 0.55 × 0.42 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.927, 0.953 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3714, 2575, 1676 |
Rint | 0.016 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.053, 0.151, 1.07 |
No. of reflections | 2575 |
No. of parameters | 181 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.20, −0.28 |
Computer programs: SMART (Bruker, 1998), SAINT-Plus (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···O2i | 0.93 | 2.48 | 3.283 (3) | 144 |
N1—H1···O1ii | 0.86 | 1.97 | 2.763 (3) | 153 |
N2—H2···O2iii | 0.86 | 1.80 | 2.646 (3) | 166 |
Symmetry codes: (i) −x+2, −y+1, −z; (ii) −x+1, −y+1, −z; (iii) x+1, y−1, z. |
Acknowledgements
This work was generously supported by the National Natural Science Foundation of China (No. 20701016).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Attention has been recently focused on the use of supramolecular interactions, such as hydrogen bonding and π-π interactions, in the controlled assembly of supramolecular architectures (Jeffrey, 1997). Hydrogen bonds often play a dominant role in crystal engineering because of their combine strength with directionality. We have reported several complexes having an imidazole entity, and have concluded that hydrogen bonding involving this group influences the geometry around the metal atom and the crystallization mechanism (Ren, Ye, He et al., 2004; Ren, Ye, Zhu et al., 2004; Ren, et al., 2007; Ren, et al., 2009). As a further contribution to this field, we describe herein the synthesis and crystal structure of the title compound.
The asymmetric unit of the title compound (Fig. 1) contains one-half of 1,4-bis(4,5-dihydro-H,4H–imidazol-2-yl)benzene (bib) cation and one 3-nitrobenzoate (NB) anion. In the bib molecule, the imidazole ring A (N1/N2/C1—C3) adopts an envelop conformation with atom C4 displaced by 0.082 (3)/A from the plane of the other ring atoms. Rings B (C4/C5/C6/C4'/C5'/C6') [symmetry code ('): 3 - x,-y,-z] are, of course, planar and they are oriented at a dihedral angle of 96.6/%.
In the crystal structure, the bib and NB ligands are joined together through hydrogen bonds between the carboxy oxygen in NB and nitrogen atom in bib to give a macrocycle N1—H1···O1 and N2—H2···O2 with the hydrogen bond geometry given in Table 1, and a face-to-face intracyclic π-π interaction at 3.50 (1) /A. Each bib group also features another macrocycles, resulting in 1-D chains running along the a axis. As illustracted in Fig. 2, the adjacent NB ligands are furthermore linked in the antiparallel alignment with offset along the bc plane by π-π contacts (3.28 (1)/A) in a 3-D structure (Fig. 2). Weak intermolecular C—H···O contacts contribute to the stability of the layered structure (Table 1).