organic compounds
[1-(Carboxymethyl)cyclohexyl]methanaminium nitrate
aMolecular Science Institute, School of Chemistry, University of the Witwatersrand, PO WITS, 2050 Johannesburg, South Africa
*Correspondence e-mail: elise.devries@wits.ac.za
The title compound, C9H18NO2+·NO3−, is an anhydrous nitrate salt of gabapentin, which is formed serendipitously in the presence of selected non-coordinating metals. The involves extensive hydrogen bonding between the –NH3+ and –COOH groups and the nitrate anion.
Related literature
For related structures, see: Ibers (2001); Ananda et al. (2003); Reece & Levendis (2008); Braga et al. (2008); Fabbiani et al. (2010). For the role of γ-aminobutyric acid (GABA) as an inhibitory neurotransmitter, see: Bowery (1993). Gabapentin is used as a neuroleptic drug in the treatment of epilepsy (Taylor, 1993) but its applications have been extended to the treatment of neuropathic pain (Magnus, 1999).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT-NT (Bruker, 2005); data reduction: SAINT-NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001; Atwood & Barbour, 2003); software used to prepare material for publication: X-SEED.
Supporting information
10.1107/S1600536811001267/pb2049sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811001267/pb2049Isup2.hkl
Gabapentin was purchased from Sigma-Aldrich. The gabapentin nitrate salt is formed serendipitously by combining gabapentin with one of the following metal salts in 1:1 stoichiometric ratios; lithium-, chromium-, indium-, iron- and aluminium nitrate. The metal salt and gabapentin were dissolved in 0.1 molar nitric acid and allowed to undergo slow evaporation at ambient temperature. It was noted that this complex did not form if the metal salt was removed from the reaction.
All H atoms were positioned geometrically and allowed to ride on their respective parent atoms, with C—H bond lengths of 0.99 (aromatic CH) 1.00 (methine CH), 0.99 (methylene CH2) and 0.98 Å (methyl CH3), and with Uiso(H) = 1.2 or 1.5 times Ueq(C). In the absence of significant
Friedel equivalents were merged before the final refinement.Data collection: APEX2 (Bruker, 2005); cell
SAINT-NT (Bruker, 2005); data reduction: SAINT-NT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001; Atwood & Barbour, 2003); software used to prepare material for publication: X-SEED (Barbour, 2001; Atwood & Barbour, 2003).Fig. 1. The atomic numbering scheme of complex (I). Displacement ellipsoids are drawn at 50% probability level. | |
Fig. 2. Projection of the unit cell of complex (I) down the a axis. All hydrogen atoms removed, except those involved in hydrogen bonding. Hydrogen bonds are indicated as dashed lines. |
C9H18NO2+·NO3− | F(000) = 504 |
Mr = 234.25 | Dx = 1.364 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 1858 reflections |
a = 8.1743 (8) Å | θ = 3.0–25.8° |
b = 11.5945 (11) Å | µ = 0.11 mm−1 |
c = 12.0396 (9) Å | T = 173 K |
V = 1141.08 (18) Å3 | Plate, colourless |
Z = 4 | 0.65 × 0.15 × 0.14 mm |
Bruker APEXII CCD diffractometer | 1278 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.044 |
Graphite monochromator | θmax = 27.0°, θmin = 2.4° |
ϕ and ω scans | h = −10→8 |
5654 measured reflections | k = −12→14 |
1448 independent reflections | l = −13→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.084 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0451P)2 + 0.0272P] where P = (Fo2 + 2Fc2)/3 |
1448 reflections | (Δ/σ)max < 0.001 |
146 parameters | Δρmax = 0.22 e Å−3 |
0 restraints | Δρmin = −0.14 e Å−3 |
C9H18NO2+·NO3− | V = 1141.08 (18) Å3 |
Mr = 234.25 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 8.1743 (8) Å | µ = 0.11 mm−1 |
b = 11.5945 (11) Å | T = 173 K |
c = 12.0396 (9) Å | 0.65 × 0.15 × 0.14 mm |
Bruker APEXII CCD diffractometer | 1278 reflections with I > 2σ(I) |
5654 measured reflections | Rint = 0.044 |
1448 independent reflections |
R[F2 > 2σ(F2)] = 0.033 | 0 restraints |
wR(F2) = 0.084 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.22 e Å−3 |
1448 reflections | Δρmin = −0.14 e Å−3 |
146 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.5335 (2) | 0.08869 (17) | 0.35572 (15) | 0.0209 (4) | |
C2 | 0.3870 (2) | 0.03596 (17) | 0.41650 (16) | 0.0221 (4) | |
H2A | 0.4250 | 0.0031 | 0.4879 | 0.026* | |
H2B | 0.3076 | 0.0979 | 0.4337 | 0.026* | |
C3 | 0.3003 (3) | −0.0580 (2) | 0.35067 (17) | 0.0301 (5) | |
H3B | 0.2046 | −0.0860 | 0.3932 | 0.036* | |
H3A | 0.3756 | −0.1238 | 0.3393 | 0.036* | |
C4 | 0.2437 (3) | −0.0124 (2) | 0.23826 (18) | 0.0369 (6) | |
H4B | 0.1597 | 0.0480 | 0.2497 | 0.044* | |
H4A | 0.1931 | −0.0759 | 0.1953 | 0.044* | |
C5 | 0.3869 (3) | 0.0380 (2) | 0.17244 (17) | 0.0354 (6) | |
H5A | 0.4643 | −0.0246 | 0.1530 | 0.042* | |
H5B | 0.3456 | 0.0721 | 0.1025 | 0.042* | |
C6 | 0.4764 (3) | 0.13032 (18) | 0.23945 (16) | 0.0272 (5) | |
H6B | 0.4031 | 0.1975 | 0.2490 | 0.033* | |
H6A | 0.5732 | 0.1564 | 0.1968 | 0.033* | |
C7 | 0.5943 (3) | 0.19806 (17) | 0.41759 (16) | 0.0255 (5) | |
H7A | 0.6985 | 0.2230 | 0.3833 | 0.031* | |
H7B | 0.5136 | 0.2605 | 0.4055 | 0.031* | |
C8 | 0.6213 (3) | 0.18538 (18) | 0.54059 (17) | 0.0243 (5) | |
C9 | 0.6729 (3) | 0.0019 (2) | 0.33743 (16) | 0.0273 (5) | |
H9A | 0.6386 | −0.0538 | 0.2797 | 0.033* | |
H9B | 0.7694 | 0.0440 | 0.3086 | 0.033* | |
N1 | 0.7225 (2) | −0.06315 (16) | 0.43807 (14) | 0.0290 (4) | |
H1A | 0.8126 | −0.1063 | 0.4226 | 0.043* | |
H1B | 0.6393 | −0.1103 | 0.4596 | 0.043* | |
H1C | 0.7460 | −0.0128 | 0.4938 | 0.043* | |
O1 | 0.7213 (2) | 0.12161 (14) | 0.58267 (12) | 0.0343 (4) | |
O2 | 0.5264 (2) | 0.25326 (14) | 0.59950 (11) | 0.0325 (4) | |
H2C | 0.5456 | 0.2434 | 0.6674 | 0.039* | |
N2 | 0.4911 (2) | 0.27445 (15) | 0.87814 (13) | 0.0245 (4) | |
O3 | 0.3960 (2) | 0.34667 (14) | 0.84059 (13) | 0.0397 (4) | |
O4 | 0.5086 (2) | 0.26085 (14) | 0.97989 (11) | 0.0351 (4) | |
O5 | 0.5740 (2) | 0.21168 (14) | 0.81312 (11) | 0.0333 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0231 (11) | 0.0206 (10) | 0.0191 (9) | −0.0003 (8) | 0.0014 (8) | 0.0006 (7) |
C2 | 0.0206 (10) | 0.0232 (10) | 0.0224 (9) | 0.0005 (9) | 0.0021 (8) | 0.0002 (8) |
C3 | 0.0306 (12) | 0.0289 (12) | 0.0307 (11) | −0.0083 (10) | −0.0026 (10) | 0.0029 (9) |
C4 | 0.0397 (14) | 0.0353 (13) | 0.0358 (13) | −0.0083 (12) | −0.0138 (10) | −0.0028 (10) |
C5 | 0.0492 (15) | 0.0355 (13) | 0.0215 (10) | −0.0054 (12) | −0.0070 (10) | 0.0010 (9) |
C6 | 0.0330 (13) | 0.0274 (11) | 0.0212 (10) | −0.0035 (10) | −0.0009 (9) | 0.0051 (8) |
C7 | 0.0265 (11) | 0.0211 (10) | 0.0288 (11) | −0.0043 (9) | −0.0007 (9) | 0.0025 (8) |
C8 | 0.0220 (11) | 0.0213 (10) | 0.0297 (11) | −0.0052 (9) | −0.0004 (9) | −0.0016 (8) |
C9 | 0.0294 (11) | 0.0283 (12) | 0.0241 (10) | 0.0030 (10) | 0.0062 (9) | 0.0031 (9) |
N1 | 0.0279 (10) | 0.0273 (10) | 0.0318 (10) | 0.0078 (8) | 0.0056 (8) | 0.0008 (8) |
O1 | 0.0364 (10) | 0.0356 (9) | 0.0307 (8) | 0.0084 (8) | −0.0063 (7) | −0.0017 (7) |
O2 | 0.0340 (9) | 0.0381 (9) | 0.0254 (7) | 0.0089 (8) | −0.0028 (6) | −0.0040 (6) |
N2 | 0.0241 (10) | 0.0224 (9) | 0.0268 (9) | −0.0001 (8) | −0.0017 (7) | 0.0001 (7) |
O3 | 0.0399 (10) | 0.0424 (10) | 0.0369 (9) | 0.0201 (9) | −0.0004 (8) | 0.0076 (7) |
O4 | 0.0458 (10) | 0.0381 (9) | 0.0214 (7) | 0.0065 (8) | −0.0056 (7) | −0.0010 (7) |
O5 | 0.0353 (9) | 0.0357 (9) | 0.0288 (8) | 0.0143 (8) | −0.0002 (7) | −0.0053 (7) |
C1—C2 | 1.531 (3) | C6—H6A | 0.9900 |
C1—C9 | 1.536 (3) | C7—C8 | 1.504 (3) |
C1—C7 | 1.552 (3) | C7—H7A | 0.9900 |
C1—C6 | 1.552 (3) | C7—H7B | 0.9900 |
C2—C3 | 1.522 (3) | C8—O1 | 1.214 (3) |
C2—H2A | 0.9900 | C8—O2 | 1.313 (3) |
C2—H2B | 0.9900 | C9—N1 | 1.484 (3) |
C3—C4 | 1.525 (3) | C9—H9A | 0.9900 |
C3—H3B | 0.9900 | C9—H9B | 0.9900 |
C3—H3A | 0.9900 | N1—H1A | 0.9100 |
C4—C5 | 1.530 (3) | N1—H1B | 0.9100 |
C4—H4B | 0.9900 | N1—H1C | 0.9100 |
C4—H4A | 0.9900 | O2—H2C | 0.8400 |
C5—C6 | 1.528 (3) | N2—O3 | 1.229 (2) |
C5—H5A | 0.9900 | N2—O4 | 1.243 (2) |
C5—H5B | 0.9900 | N2—O5 | 1.266 (2) |
C6—H6B | 0.9900 | ||
C2—C1—C9 | 112.79 (16) | C5—C6—H6B | 108.8 |
C2—C1—C7 | 110.32 (16) | C1—C6—H6B | 108.8 |
C9—C1—C7 | 111.50 (17) | C5—C6—H6A | 108.8 |
C2—C1—C6 | 108.67 (17) | C1—C6—H6A | 108.8 |
C9—C1—C6 | 107.29 (16) | H6B—C6—H6A | 107.7 |
C7—C1—C6 | 105.95 (16) | C8—C7—C1 | 116.07 (16) |
C3—C2—C1 | 113.65 (16) | C8—C7—H7A | 108.3 |
C3—C2—H2A | 108.8 | C1—C7—H7A | 108.3 |
C1—C2—H2A | 108.8 | C8—C7—H7B | 108.3 |
C3—C2—H2B | 108.8 | C1—C7—H7B | 108.3 |
C1—C2—H2B | 108.8 | H7A—C7—H7B | 107.4 |
H2A—C2—H2B | 107.7 | O1—C8—O2 | 122.55 (19) |
C2—C3—C4 | 110.82 (19) | O1—C8—C7 | 124.7 (2) |
C2—C3—H3B | 109.5 | O2—C8—C7 | 112.73 (19) |
C4—C3—H3B | 109.5 | N1—C9—C1 | 114.76 (16) |
C2—C3—H3A | 109.5 | N1—C9—H9A | 108.6 |
C4—C3—H3A | 109.5 | C1—C9—H9A | 108.6 |
H3B—C3—H3A | 108.1 | N1—C9—H9B | 108.6 |
C3—C4—C5 | 111.1 (2) | C1—C9—H9B | 108.6 |
C3—C4—H4B | 109.4 | H9A—C9—H9B | 107.6 |
C5—C4—H4B | 109.4 | C9—N1—H1A | 109.5 |
C3—C4—H4A | 109.4 | C9—N1—H1B | 109.5 |
C5—C4—H4A | 109.4 | H1A—N1—H1B | 109.5 |
H4B—C4—H4A | 108.0 | C9—N1—H1C | 109.5 |
C6—C5—C4 | 111.14 (18) | H1A—N1—H1C | 109.5 |
C6—C5—H5A | 109.4 | H1B—N1—H1C | 109.5 |
C4—C5—H5A | 109.4 | C8—O2—H2C | 109.5 |
C6—C5—H5B | 109.4 | O3—N2—O4 | 121.46 (18) |
C4—C5—H5B | 109.4 | O3—N2—O5 | 120.20 (16) |
H5A—C5—H5B | 108.0 | O4—N2—O5 | 118.34 (18) |
C5—C6—C1 | 113.72 (17) | ||
C9—C1—C2—C3 | −65.3 (2) | C7—C1—C6—C5 | −170.79 (19) |
C7—C1—C2—C3 | 169.32 (17) | C2—C1—C7—C8 | 49.5 (2) |
C6—C1—C2—C3 | 53.6 (2) | C9—C1—C7—C8 | −76.7 (2) |
C1—C2—C3—C4 | −56.9 (3) | C6—C1—C7—C8 | 166.91 (19) |
C2—C3—C4—C5 | 56.0 (3) | C1—C7—C8—O1 | 63.3 (3) |
C3—C4—C5—C6 | −54.9 (3) | C1—C7—C8—O2 | −118.1 (2) |
C4—C5—C6—C1 | 54.1 (3) | C2—C1—C9—N1 | −49.7 (2) |
C2—C1—C6—C5 | −52.2 (2) | C7—C1—C9—N1 | 75.1 (2) |
C9—C1—C6—C5 | 70.0 (2) | C6—C1—C9—N1 | −169.31 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O5i | 0.91 | 2.02 | 2.828 (2) | 147 |
N1—H1A···O4i | 0.91 | 2.41 | 3.215 (2) | 147 |
N1—H1A···N2i | 0.91 | 2.58 | 3.465 (3) | 164 |
N1—H1B···O4ii | 0.91 | 2.06 | 2.951 (3) | 168 |
N1—H1B···O3ii | 0.91 | 2.47 | 3.022 (2) | 119 |
N1—H1B···N2ii | 0.91 | 2.60 | 3.390 (3) | 146 |
N1—H1C···O1 | 0.91 | 1.90 | 2.760 (2) | 157 |
O2—H2C···O5 | 0.84 | 1.81 | 2.646 (2) | 175 |
O2—H2C···N2 | 0.84 | 2.60 | 3.376 (2) | 154 |
Symmetry codes: (i) −x+3/2, −y, z−1/2; (ii) −x+1, y−1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C9H18NO2+·NO3− |
Mr | 234.25 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 173 |
a, b, c (Å) | 8.1743 (8), 11.5945 (11), 12.0396 (9) |
V (Å3) | 1141.08 (18) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.65 × 0.15 × 0.14 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5654, 1448, 1278 |
Rint | 0.044 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.084, 1.06 |
No. of reflections | 1448 |
No. of parameters | 146 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.14 |
Computer programs: APEX2 (Bruker, 2005), SAINT-NT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001; Atwood & Barbour, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O5i | 0.91 | 2.02 | 2.828 (2) | 147 |
N1—H1A···O4i | 0.91 | 2.41 | 3.215 (2) | 147 |
N1—H1A···N2i | 0.91 | 2.58 | 3.465 (3) | 164 |
N1—H1B···O4ii | 0.91 | 2.06 | 2.951 (3) | 168 |
N1—H1B···O3ii | 0.91 | 2.47 | 3.022 (2) | 119 |
N1—H1B···N2ii | 0.91 | 2.60 | 3.390 (3) | 146 |
N1—H1C···O1 | 0.91 | 1.90 | 2.760 (2) | 157 |
O2—H2C···O5 | 0.84 | 1.81 | 2.646 (2) | 175 |
O2—H2C···N2 | 0.84 | 2.60 | 3.376 (2) | 154 |
Symmetry codes: (i) −x+3/2, −y, z−1/2; (ii) −x+1, y−1/2, −z+3/2. |
Acknowledgements
The authors would like to thank the National Research Foundation of South Africa and the University of the Witwatersrand for financial support. EJCV would like to acknowledge Dr M. Fernandes for informative discussions and advice.
References
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The role of γ-aminobutyric acid (GABA) as an inhibitory neurotransmitter (Bowery, 1993) has stimulated research on the synthesis of GABA analogues as potential central nervous system agents. One of these analogues is the amino acid gabapentin [1-(aminomethyl)cyclohexaneacetic acid] which is commercially available as Neurotin. Gabapentin is used as a neuroleptic drug in the treatment of epilepsy (Taylor, 1993) but its applications have been extended to the treatment of neuropathic pain (Magnus, 1999). Gabapentin is widely studied and already four polymorphic forms of the drug are known, three polymorphic forms under ambient conditions (Ibers, 2001; Reece and Levendis, 2008; Braga et al., 2008) and a fourth at high pressure (Fabbiani et al., 2010). The present paper reports on the formation of an anhydrous gabapentin nitrate salt, complex (I).
Complex (I) was obtained serendipitously when investigating the possibility of producing novel metal complexes with gabapentin. Lithium-, chromium-, indium-, iron- and aluminium nitrate were used in an attempt to make metal complexes. However analysis of the crystalline materials revealed a gabapentin nitrate salt was obtained in each case. The atomic numbering scheme of the gabapentin nitrate complex, C9H18NO2+.NO3-, is shown in Fig. 1. Complex (I) crystallizes in the orthorhombic space group P212121 with a protonated amine group. The cyclohexane ring is in the chair conformation with the ammonium group in the equatorial position. The conformation of the gabapentin molecule is defined by the formation of an intramolecular hydrogen bond between the carboxylate oxygen and one of the hydrogen atoms belonging to the ammonium group (N1—H1C···O1). The crystal packing shows how each nitrate anion links to three adjacent molecules by means of one O—H···O, four N—H···O, two N—H···N and one O—H···N hydrogen-bonding interactions. The donors are the H atoms of the carboxylic acid and amine group, while the acceptors include all three O atoms of the nitrate anion (Fig. 2). Additionally, one nitrate O atom is involved in a weak hydrogen bonding interaction with a symmetry related carbon atom, with a C9—H9B···O3 distance of 3.317 (3) Å and angle of 149°.