organic compounds
4-(4,4-Difluoro-1,3,5,7-tetramethyl-3a-aza-4a-azonia-4-borata-s-indacen-8-yl)benzonitrile
aDepartment of Chemistry, Shandong University, Jinan 250100, People's Republic of China, and bDepartment of Chemistry, Dezhou University, Dezhou 253023, People's Republic of China
*Correspondence e-mail: jianzhuang@ustb.edu.cn
The title compound, C20H18BF2N3, contains one C9BN2 (Bodipy) framework and one cyanobenzyl group. The Bodipy framework is essentially planar with a maximum deviation of 0.041 (2) Å. The introduction of two methyl groups at positions 1 and 7 of s-indacene in the Bodipy unit results in almost orthogonal configuration between the mean plane of the Bodipy unit and the cyanobenzyl group [dihedral angle = 89.78 (4)°].
Related literature
For the structures and optical properties of Bodipy dyes, see: Loudet & Burgess (2007) and Feng et al. (2008), respectively. For the relation between the crystal structures and optical properties of Bodipy compounds, see: Cui et al. (2007); Broring et al.(2008).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1996); cell SAINT (Bruker, 1996); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811009457/aa2003sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811009457/aa2003Isup2.hkl
To the mixture of 4-cyanobenzaldehyde (131 mg, 1 mmol) and 2,4-dimethylpyrrole (190 mg, 2.00 mmol) dissolved in CH2Cl2 (100 ml), one drop of TFAwas added. The resulting mixture was then stirred at room temperature under N2 atmosphere. When
(TLC) monitoring indicated the complete consumption of the aldehyde, a solution of DDQ (227 mg, 1 mmol) in CH2Cl2 (40 ml) was added and the reaction mixture was further stirred for another 15 min. After the addition of N, N-diisopropylethylamine (DIEA) (2 ml) into the mixture for 15 min, the BF3—OEt2 (2.0 ml) was added into the reaction mixture and stirring was continued for another 30 min. The resulting mixture was evaporated, and the residue was chromatographed on a silica gel column using CH2Cl2/hexane (1:1) as Repeated followed by recrystallization from CH2Cl2 and hexane gave the target compound as black-red crystals. Yield: 104 mg, 15%. Anal. for C20H18BF2N3: Calc. C, 68.79; H, 5.20; N, 12.03; Found: C, 68.10; H, 5.17; N, 12.81%. The No. of CCDC: 814146.All H atoms were placed in geometrically idealized positions and treated as riding on their parent atoms with C–H distances of 0.96Å and Uiso(H)=1.5Ueq(C) for methyl H-atoms and C–H distances of 0.93Å and Uiso(H)=1.2Ueq(C) for other H-atoms.
Data collection: SMART (Bruker, 1996); cell
SAINT (Bruker, 1996); data reduction: SAINT (Bruker, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound. Displacement ellipsoids are drawn at 30% probability level. |
C20H18BF2N3 | F(000) = 728 |
Mr = 349.18 | Dx = 1.238 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3286 reflections |
a = 7.6498 (3) Å | θ = 2.3–25.0° |
b = 11.3715 (5) Å | µ = 0.09 mm−1 |
c = 21.555 (1) Å | T = 293 K |
β = 92.008 (4)° | Block, red |
V = 1873.91 (14) Å3 | 0.20 × 0.18 × 0.16 mm |
Z = 4 |
Bruker SMART 1000 CCD area-detector diffractometer | 3286 independent reflections |
Radiation source: fine-focus sealed tube | 2240 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
ϕ and ω scans | θmax = 25.0°, θmin = 3.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→8 |
Tmin = 0.983, Tmax = 0.986 | k = −13→13 |
7304 measured reflections | l = −25→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.065 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.195 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.1059P)2 + 0.276P] where P = (Fo2 + 2Fc2)/3 |
3286 reflections | (Δ/σ)max < 0.001 |
235 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C20H18BF2N3 | V = 1873.91 (14) Å3 |
Mr = 349.18 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.6498 (3) Å | µ = 0.09 mm−1 |
b = 11.3715 (5) Å | T = 293 K |
c = 21.555 (1) Å | 0.20 × 0.18 × 0.16 mm |
β = 92.008 (4)° |
Bruker SMART 1000 CCD area-detector diffractometer | 3286 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2240 reflections with I > 2σ(I) |
Tmin = 0.983, Tmax = 0.986 | Rint = 0.028 |
7304 measured reflections |
R[F2 > 2σ(F2)] = 0.065 | 0 restraints |
wR(F2) = 0.195 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.30 e Å−3 |
3286 reflections | Δρmin = −0.25 e Å−3 |
235 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F2 | 0.6736 (2) | 1.18071 (15) | 0.82647 (9) | 0.0706 (6) | |
N1 | 0.7514 (3) | 0.97876 (19) | 0.81048 (9) | 0.0409 (6) | |
F1 | 0.8040 (3) | 1.13260 (16) | 0.73783 (8) | 0.0750 (6) | |
N2 | 0.9776 (3) | 1.13074 (18) | 0.83306 (9) | 0.0384 (5) | |
C17 | 1.2845 (4) | 0.6972 (2) | 0.99641 (13) | 0.0491 (7) | |
C8 | 1.0075 (3) | 0.9342 (2) | 0.87582 (11) | 0.0376 (6) | |
C14 | 1.1043 (3) | 0.8502 (2) | 0.91690 (12) | 0.0391 (6) | |
C10 | 1.0737 (3) | 1.0468 (2) | 0.86812 (11) | 0.0388 (6) | |
C9 | 0.8499 (3) | 0.8989 (2) | 0.84668 (11) | 0.0405 (6) | |
C20 | 1.3795 (5) | 0.6205 (3) | 1.03874 (14) | 0.0619 (9) | |
C18 | 1.1552 (4) | 0.7687 (3) | 1.01831 (13) | 0.0623 (9) | |
H18 | 1.1293 | 0.7667 | 1.0601 | 0.075* | |
C16 | 1.3223 (4) | 0.7006 (3) | 0.93441 (14) | 0.0593 (8) | |
H16 | 1.4078 | 0.6513 | 0.9191 | 0.071* | |
C15 | 1.2329 (4) | 0.7774 (3) | 0.89494 (13) | 0.0555 (8) | |
H15 | 1.2595 | 0.7801 | 0.8532 | 0.067* | |
C2 | 1.2232 (4) | 1.2167 (3) | 0.86865 (14) | 0.0548 (8) | |
H2 | 1.3084 | 1.2739 | 0.8758 | 0.066* | |
C5 | 0.6123 (3) | 0.9205 (3) | 0.78539 (13) | 0.0495 (7) | |
C19 | 1.0646 (4) | 0.8426 (3) | 0.97863 (13) | 0.0579 (8) | |
H19 | 0.9748 | 0.8885 | 0.9936 | 0.069* | |
C4 | 0.9998 (4) | 1.3421 (3) | 0.80490 (16) | 0.0627 (9) | |
H4A | 0.8893 | 1.3266 | 0.7840 | 0.094* | |
H4B | 1.0814 | 1.3701 | 0.7754 | 0.094* | |
H4C | 0.9849 | 1.4008 | 0.8363 | 0.094* | |
C1 | 1.2306 (3) | 1.1032 (3) | 0.89043 (13) | 0.0484 (7) | |
C7 | 0.7648 (4) | 0.7874 (2) | 0.84295 (14) | 0.0510 (7) | |
C6 | 0.6190 (4) | 0.8041 (3) | 0.80502 (15) | 0.0588 (8) | |
H3 | 0.5373 | 0.7465 | 0.7942 | 0.071* | |
C3 | 1.0675 (4) | 1.2325 (2) | 0.83408 (12) | 0.0461 (7) | |
B1 | 0.7971 (4) | 1.1087 (3) | 0.80066 (14) | 0.0441 (8) | |
C11 | 0.8200 (5) | 0.6725 (3) | 0.87155 (19) | 0.0788 (11) | |
H5A | 0.9251 | 0.6836 | 0.8965 | 0.118* | |
H5B | 0.8411 | 0.6164 | 0.8393 | 0.118* | |
H5C | 0.7290 | 0.6438 | 0.8971 | 0.118* | |
C13 | 1.3786 (4) | 1.0532 (3) | 0.92990 (17) | 0.0722 (10) | |
H13A | 1.3544 | 0.9724 | 0.9392 | 0.108* | |
H13B | 1.3907 | 1.0971 | 0.9679 | 0.108* | |
H13C | 1.4852 | 1.0582 | 0.9078 | 0.108* | |
C12 | 0.4752 (4) | 0.9784 (3) | 0.74490 (17) | 0.0751 (10) | |
H1A | 0.5045 | 1.0598 | 0.7395 | 0.113* | |
H1B | 0.3640 | 0.9725 | 0.7640 | 0.113* | |
H1C | 0.4690 | 0.9402 | 0.7052 | 0.113* | |
N3 | 1.4528 (4) | 0.5619 (3) | 1.07363 (14) | 0.0836 (10) |
U11 | U22 | U33 | U12 | U13 | U23 | |
F2 | 0.0473 (9) | 0.0506 (10) | 0.1138 (16) | 0.0101 (8) | 0.0003 (10) | −0.0057 (10) |
N1 | 0.0394 (11) | 0.0438 (13) | 0.0393 (12) | −0.0006 (10) | −0.0026 (9) | 0.0010 (10) |
F1 | 0.0938 (14) | 0.0822 (13) | 0.0473 (11) | −0.0220 (11) | −0.0203 (9) | 0.0224 (9) |
N2 | 0.0407 (11) | 0.0357 (12) | 0.0388 (12) | 0.0002 (9) | 0.0007 (9) | 0.0048 (10) |
C17 | 0.0574 (17) | 0.0432 (16) | 0.0460 (17) | 0.0028 (13) | −0.0073 (13) | 0.0088 (13) |
C8 | 0.0411 (13) | 0.0378 (15) | 0.0342 (13) | 0.0026 (11) | 0.0065 (11) | −0.0002 (11) |
C14 | 0.0407 (13) | 0.0374 (14) | 0.0390 (15) | 0.0019 (11) | −0.0008 (11) | 0.0004 (12) |
C10 | 0.0366 (12) | 0.0439 (15) | 0.0358 (14) | 0.0035 (11) | 0.0004 (10) | 0.0011 (12) |
C9 | 0.0402 (13) | 0.0401 (15) | 0.0412 (14) | 0.0019 (11) | 0.0003 (11) | 0.0005 (12) |
C20 | 0.084 (2) | 0.0478 (18) | 0.0534 (19) | 0.0053 (17) | −0.0091 (17) | 0.0070 (16) |
C18 | 0.093 (2) | 0.0577 (19) | 0.0371 (16) | 0.0218 (18) | 0.0102 (16) | 0.0069 (15) |
C16 | 0.0633 (18) | 0.064 (2) | 0.0510 (18) | 0.0255 (16) | 0.0034 (14) | 0.0056 (15) |
C15 | 0.0631 (18) | 0.065 (2) | 0.0383 (15) | 0.0189 (16) | 0.0066 (13) | 0.0074 (14) |
C2 | 0.0499 (16) | 0.0527 (19) | 0.0617 (19) | −0.0188 (14) | −0.0007 (14) | 0.0050 (15) |
C5 | 0.0418 (14) | 0.0539 (18) | 0.0522 (16) | −0.0050 (13) | −0.0060 (13) | −0.0024 (14) |
C19 | 0.078 (2) | 0.0560 (19) | 0.0410 (16) | 0.0208 (16) | 0.0178 (15) | 0.0044 (14) |
C4 | 0.068 (2) | 0.0479 (18) | 0.072 (2) | −0.0081 (16) | 0.0016 (17) | 0.0148 (16) |
C1 | 0.0425 (14) | 0.0533 (18) | 0.0489 (16) | −0.0033 (13) | −0.0048 (12) | 0.0027 (14) |
C7 | 0.0492 (15) | 0.0412 (16) | 0.0626 (19) | −0.0040 (13) | −0.0011 (14) | −0.0014 (14) |
C6 | 0.0496 (16) | 0.0511 (19) | 0.075 (2) | −0.0158 (14) | −0.0031 (15) | −0.0054 (16) |
C3 | 0.0501 (15) | 0.0439 (16) | 0.0444 (16) | −0.0074 (13) | 0.0052 (12) | 0.0043 (13) |
B1 | 0.0478 (17) | 0.0419 (18) | 0.0421 (17) | 0.0003 (14) | −0.0056 (14) | 0.0069 (15) |
C11 | 0.079 (2) | 0.0441 (19) | 0.112 (3) | −0.0110 (17) | −0.013 (2) | 0.0184 (19) |
C13 | 0.0506 (17) | 0.078 (2) | 0.086 (2) | −0.0111 (16) | −0.0224 (17) | 0.0132 (19) |
C12 | 0.0591 (19) | 0.077 (2) | 0.086 (2) | −0.0084 (18) | −0.0288 (18) | 0.0025 (19) |
N3 | 0.111 (2) | 0.0673 (19) | 0.0713 (19) | 0.0198 (18) | −0.0186 (17) | 0.0168 (16) |
F2—B1 | 1.382 (4) | C2—C1 | 1.374 (4) |
N1—C5 | 1.350 (3) | C2—C3 | 1.394 (4) |
N1—C9 | 1.400 (3) | C2—H2 | 0.9300 |
N1—B1 | 1.535 (4) | C5—C6 | 1.390 (4) |
F1—B1 | 1.384 (3) | C5—C12 | 1.494 (4) |
N2—C3 | 1.346 (3) | C19—H19 | 0.9300 |
N2—C10 | 1.408 (3) | C4—C3 | 1.482 (4) |
N2—B1 | 1.545 (4) | C4—H4A | 0.9600 |
C17—C18 | 1.376 (4) | C4—H4B | 0.9600 |
C17—C16 | 1.378 (4) | C4—H4C | 0.9600 |
C17—C20 | 1.440 (4) | C1—C13 | 1.504 (4) |
C8—C10 | 1.390 (3) | C7—C6 | 1.373 (4) |
C8—C9 | 1.398 (3) | C7—C11 | 1.500 (4) |
C8—C14 | 1.483 (3) | C6—H3 | 0.9300 |
C14—C19 | 1.378 (4) | C11—H5A | 0.9600 |
C14—C15 | 1.382 (4) | C11—H5B | 0.9600 |
C10—C1 | 1.429 (4) | C11—H5C | 0.9600 |
C9—C7 | 1.426 (4) | C13—H13A | 0.9600 |
C20—N3 | 1.138 (4) | C13—H13B | 0.9600 |
C18—C19 | 1.371 (4) | C13—H13C | 0.9600 |
C18—H18 | 0.9300 | C12—H1A | 0.9600 |
C16—C15 | 1.384 (4) | C12—H1B | 0.9600 |
C16—H16 | 0.9300 | C12—H1C | 0.9600 |
C15—H15 | 0.9300 | ||
C5—N1—C9 | 107.8 (2) | C3—C4—H4B | 109.5 |
C5—N1—B1 | 126.7 (2) | H4A—C4—H4B | 109.5 |
C9—N1—B1 | 125.5 (2) | C3—C4—H4C | 109.5 |
C3—N2—C10 | 108.5 (2) | H4A—C4—H4C | 109.5 |
C3—N2—B1 | 126.5 (2) | H4B—C4—H4C | 109.5 |
C10—N2—B1 | 125.0 (2) | C2—C1—C10 | 106.4 (2) |
C18—C17—C16 | 119.6 (2) | C2—C1—C13 | 124.7 (3) |
C18—C17—C20 | 119.5 (3) | C10—C1—C13 | 128.8 (3) |
C16—C17—C20 | 120.9 (3) | C6—C7—C9 | 105.7 (2) |
C10—C8—C9 | 121.5 (2) | C6—C7—C11 | 125.2 (3) |
C10—C8—C14 | 119.2 (2) | C9—C7—C11 | 129.1 (3) |
C9—C8—C14 | 119.2 (2) | C7—C6—C5 | 109.5 (2) |
C19—C14—C15 | 118.5 (2) | C7—C6—H3 | 125.3 |
C19—C14—C8 | 119.6 (2) | C5—C6—H3 | 125.3 |
C15—C14—C8 | 121.9 (2) | N2—C3—C2 | 108.9 (2) |
C8—C10—N2 | 120.2 (2) | N2—C3—C4 | 123.1 (3) |
C8—C10—C1 | 132.8 (2) | C2—C3—C4 | 127.9 (3) |
N2—C10—C1 | 107.0 (2) | F2—B1—F1 | 109.1 (2) |
C8—C9—N1 | 120.2 (2) | F2—B1—N1 | 110.6 (2) |
C8—C9—C7 | 131.7 (2) | F1—B1—N1 | 109.9 (2) |
N1—C9—C7 | 108.0 (2) | F2—B1—N2 | 109.5 (2) |
N3—C20—C17 | 177.9 (4) | F1—B1—N2 | 110.3 (2) |
C19—C18—C17 | 120.1 (3) | N1—B1—N2 | 107.3 (2) |
C19—C18—H18 | 119.9 | C7—C11—H5A | 109.5 |
C17—C18—H18 | 119.9 | C7—C11—H5B | 109.5 |
C17—C16—C15 | 119.9 (3) | H5A—C11—H5B | 109.5 |
C17—C16—H16 | 120.1 | C7—C11—H5C | 109.5 |
C15—C16—H16 | 120.1 | H5A—C11—H5C | 109.5 |
C14—C15—C16 | 120.7 (3) | H5B—C11—H5C | 109.5 |
C14—C15—H15 | 119.7 | C1—C13—H13A | 109.5 |
C16—C15—H15 | 119.7 | C1—C13—H13B | 109.5 |
C1—C2—C3 | 109.1 (2) | H13A—C13—H13B | 109.5 |
C1—C2—H2 | 125.4 | C1—C13—H13C | 109.5 |
C3—C2—H2 | 125.4 | H13A—C13—H13C | 109.5 |
N1—C5—C6 | 109.0 (2) | H13B—C13—H13C | 109.5 |
N1—C5—C12 | 123.0 (3) | C5—C12—H1A | 109.5 |
C6—C5—C12 | 128.0 (3) | C5—C12—H1B | 109.5 |
C18—C19—C14 | 121.1 (3) | H1A—C12—H1B | 109.5 |
C18—C19—H19 | 119.4 | C5—C12—H1C | 109.5 |
C14—C19—H19 | 119.4 | H1A—C12—H1C | 109.5 |
C3—C4—H4A | 109.5 | H1B—C12—H1C | 109.5 |
Experimental details
Crystal data | |
Chemical formula | C20H18BF2N3 |
Mr | 349.18 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 7.6498 (3), 11.3715 (5), 21.555 (1) |
β (°) | 92.008 (4) |
V (Å3) | 1873.91 (14) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.20 × 0.18 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.983, 0.986 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7304, 3286, 2240 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.065, 0.195, 1.07 |
No. of reflections | 3286 |
No. of parameters | 235 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.25 |
Computer programs: SMART (Bruker, 1996), SAINT (Bruker, 1996), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
F2—B1 | 1.382 (4) | N2—C10 | 1.408 (3) |
N1—C5 | 1.350 (3) | N2—B1 | 1.545 (4) |
N1—C9 | 1.400 (3) | C8—C10 | 1.390 (3) |
N1—B1 | 1.535 (4) | C8—C9 | 1.398 (3) |
F1—B1 | 1.384 (3) | C10—C1 | 1.429 (4) |
N2—C3 | 1.346 (3) | C9—C7 | 1.426 (4) |
References
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Fluorescent dyes, especially 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (Bodipy), have been extensively studied due to their advantageous photospectral properties including high photostability, sharp absorption and emission bands, relatively high absorption coefficient, high fluorescence quantum yields, and the extraordinary feature of excitation/emission wavelengths in the visible region (Loudet et al., 2007; Feng et al. 2008). Single crystal structural studies of these compounds have become increasingly important in revealing precisely the relation between their optical properties and molecular structures (Cui et al., 2007). As an extension of our work on the structural characterization of this field, the title compound, (I), is synthesized and characterized by x-ray diffraction, as shown in Fig. 1.
The compound (I) crystallizes in the monoclinic system with only one molecule per unit cell, and contains mainly one C9BN2 (Bodipy) framework and one cyanobenzyl unit. The C9BN2 (Bodipy) framework consisting of one central six-membered and two adjacent five-membered rings is essentially flat, with the maximum deviation from the least-squares mean plane being 0.041 Å. As shown in Table 1, the C—C and C—N bond lengths within C9BN2 (Bodipy) framework, without any clear distinction between single and double bonds, indicate the strongly delocalized π-system nature of the Bodipy framework. However, this π-electron delocalization is interrupted between the two B—N bonds (Broring et al. 2008). More interestingly, the introduction of two methyl groups onto C-1 and C-7 atoms in Bodipy moiety results in almostly orthogonal configuration between the mean plane of Bodipy moiety and cyanobenzyl unit with the dihedral angle of 89.78 (4)°, indicating the almost non-electronic coupling nature between these moieties. (Loudet et al., 2007).