organic compounds
Methyl 3-(3-benzoylthioureido)propanoate
aFuel Cell Institute, Universiti Kebangsaan Malaysia, UKM 43600 Bangi, Selangor, Malaysia, and bSchool of Chemical Sciences and Food Technology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, UKM 43600 Bangi, Selangor, Malaysia
*Correspondence e-mail: ibnhum@gmail.com
In the title compound, C12H14N2O3S, the propyl acetate group and the benzoyl group adopt a cis–trans conformation, respectively, with respect to the thiono S atom across the C—N bonds. The phenyl ring is twisted relative to the the thiourea mean plane, forming a dihedral angle of 24.16 (9)°. An intramolecular N—H⋯O hydrogen bond occurs. The crystal packing is stabilized by intermolecular N—H⋯O and C—H⋯O hydrogen bonds, forming a chain along the a axis.
Related literature
For bond-length data, see: Allen et al. (1987). For related strutures, see: Yamin & Hassan (2004); Hassan et al. (2008a,b,c, 2009), Hung et al. (2010). For a related synthesis, see: Hassan et al. (2008a).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008), PARST (Nardelli, 1995) and PLATON.
Supporting information
10.1107/S160053681100568X/dn2657sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681100568X/dn2657Isup2.hkl
The title compound was synthesized according to a previously reported compound (Hassan et al., 2008a). A yellowish crystal, suitable for X-ray crystallography, was obtained by a slow evaporation from CH2Cl2 solution at room temperature (yield 79%).
H atoms of both C and N atoms were positioned geometrically and allowed to ride on their parent atoms, with Uiso= 1.2Ueq (C) for aromatic 0.93 Å, Uiso = 1.2Ueq (C) for CH2 0.97 Å, Uiso = 1.5Ueq (C) for CH3 0.96 Å, Uiso = 1.2Ueq (N) for N—H 0.86 Å.
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008), PARST (Nardelli, 1995) and PLATON (Spek, 2009).C12H14N2O3S | Z = 2 |
Mr = 266.31 | F(000) = 280 |
Triclinic, P1 | Dx = 1.355 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.5901 (18) Å | Cell parameters from 2861 reflections |
b = 8.2688 (19) Å | θ = 1.9–28.3° |
c = 10.547 (3) Å | µ = 0.25 mm−1 |
α = 86.168 (5)° | T = 298 K |
β = 86.892 (4)° | Block, colourless |
γ = 81.545 (4)° | 0.35 × 0.31 × 0.23 mm |
V = 652.6 (3) Å3 |
Bruker SMART APEX CCD area-detector diffractometer | 3229 independent reflections |
Radiation source: fine-focus sealed tube | 2654 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ω scans | θmax = 28.3°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | h = −10→10 |
Tmin = 0.918, Tmax = 0.945 | k = −11→11 |
8953 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.057 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.141 | H-atom parameters constrained |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0624P)2 + 0.1657P] where P = (Fo2 + 2Fc2)/3 |
3229 reflections | (Δ/σ)max < 0.001 |
163 parameters | Δρmax = 0.27 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
C12H14N2O3S | γ = 81.545 (4)° |
Mr = 266.31 | V = 652.6 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.5901 (18) Å | Mo Kα radiation |
b = 8.2688 (19) Å | µ = 0.25 mm−1 |
c = 10.547 (3) Å | T = 298 K |
α = 86.168 (5)° | 0.35 × 0.31 × 0.23 mm |
β = 86.892 (4)° |
Bruker SMART APEX CCD area-detector diffractometer | 3229 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | 2654 reflections with I > 2σ(I) |
Tmin = 0.918, Tmax = 0.945 | Rint = 0.024 |
8953 measured reflections |
R[F2 > 2σ(F2)] = 0.057 | 0 restraints |
wR(F2) = 0.141 | H-atom parameters constrained |
S = 1.12 | Δρmax = 0.27 e Å−3 |
3229 reflections | Δρmin = −0.22 e Å−3 |
163 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.38506 (7) | 0.35748 (7) | 0.87738 (5) | 0.05290 (19) | |
O1 | 0.2339 (2) | 0.3507 (2) | 0.46757 (14) | 0.0658 (5) | |
O2 | −0.1984 (2) | 0.2418 (2) | 0.71396 (14) | 0.0594 (4) | |
O3 | −0.1813 (2) | 0.1042 (2) | 0.90333 (16) | 0.0656 (5) | |
N1 | 0.4213 (2) | 0.3096 (2) | 0.63147 (15) | 0.0442 (4) | |
H1A | 0.5305 | 0.2778 | 0.6496 | 0.053* | |
N2 | 0.1375 (2) | 0.4127 (2) | 0.70422 (15) | 0.0472 (4) | |
H2A | 0.1086 | 0.4052 | 0.6273 | 0.057* | |
C1 | 0.6740 (3) | 0.1203 (3) | 0.4582 (2) | 0.0572 (6) | |
H1B | 0.6873 | 0.0919 | 0.5444 | 0.069* | |
C2 | 0.7984 (3) | 0.0513 (3) | 0.3688 (3) | 0.0685 (7) | |
H2B | 0.8948 | −0.0242 | 0.3949 | 0.082* | |
C3 | 0.7794 (3) | 0.0944 (3) | 0.2416 (2) | 0.0644 (6) | |
H3A | 0.8635 | 0.0484 | 0.1820 | 0.077* | |
C4 | 0.6379 (3) | 0.2044 (3) | 0.2022 (2) | 0.0630 (6) | |
H4A | 0.6256 | 0.2331 | 0.1160 | 0.076* | |
C5 | 0.5136 (3) | 0.2726 (3) | 0.2903 (2) | 0.0544 (5) | |
H5A | 0.4173 | 0.3473 | 0.2630 | 0.065* | |
C6 | 0.5295 (3) | 0.2318 (2) | 0.41872 (18) | 0.0429 (4) | |
C7 | 0.3820 (3) | 0.3027 (3) | 0.50660 (18) | 0.0457 (5) | |
C8 | 0.3050 (3) | 0.3619 (2) | 0.73260 (17) | 0.0412 (4) | |
C9 | −0.0010 (3) | 0.4804 (3) | 0.7945 (2) | 0.0524 (5) | |
H9A | −0.0993 | 0.5396 | 0.7477 | 0.063* | |
H9B | 0.0463 | 0.5584 | 0.8432 | 0.063* | |
C10 | −0.0714 (3) | 0.3532 (3) | 0.88575 (19) | 0.0548 (6) | |
H10A | 0.0264 | 0.2960 | 0.9341 | 0.066* | |
H10B | −0.1579 | 0.4087 | 0.9453 | 0.066* | |
C11 | −0.1567 (2) | 0.2306 (3) | 0.82278 (19) | 0.0498 (5) | |
C12 | −0.2732 (4) | −0.0183 (4) | 0.8564 (3) | 0.0828 (8) | |
H12A | −0.2834 | −0.1032 | 0.9219 | 0.124* | |
H12B | −0.2074 | −0.0642 | 0.7838 | 0.124* | |
H12C | −0.3900 | 0.0309 | 0.8323 | 0.124* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0462 (3) | 0.0734 (4) | 0.0374 (3) | 0.0019 (2) | −0.0064 (2) | −0.0099 (2) |
O1 | 0.0455 (8) | 0.1087 (14) | 0.0376 (8) | 0.0111 (8) | −0.0050 (6) | −0.0092 (8) |
O2 | 0.0487 (9) | 0.0918 (12) | 0.0405 (8) | −0.0169 (8) | −0.0049 (6) | −0.0074 (8) |
O3 | 0.0587 (10) | 0.0788 (12) | 0.0545 (9) | 0.0018 (8) | −0.0010 (8) | 0.0032 (8) |
N1 | 0.0347 (8) | 0.0593 (10) | 0.0377 (8) | −0.0015 (7) | −0.0020 (6) | −0.0076 (7) |
N2 | 0.0380 (8) | 0.0664 (11) | 0.0360 (8) | −0.0001 (8) | −0.0033 (6) | −0.0086 (7) |
C1 | 0.0571 (13) | 0.0664 (14) | 0.0464 (11) | 0.0019 (11) | −0.0066 (10) | −0.0101 (10) |
C2 | 0.0546 (14) | 0.0803 (17) | 0.0663 (15) | 0.0120 (12) | −0.0043 (11) | −0.0194 (13) |
C3 | 0.0532 (13) | 0.0839 (17) | 0.0544 (13) | −0.0035 (12) | 0.0137 (10) | −0.0200 (12) |
C4 | 0.0623 (14) | 0.0824 (17) | 0.0419 (11) | −0.0071 (12) | 0.0108 (10) | −0.0037 (11) |
C5 | 0.0491 (12) | 0.0660 (14) | 0.0450 (11) | −0.0022 (10) | 0.0038 (9) | 0.0005 (10) |
C6 | 0.0407 (10) | 0.0494 (11) | 0.0400 (10) | −0.0096 (8) | 0.0009 (8) | −0.0072 (8) |
C7 | 0.0434 (10) | 0.0571 (12) | 0.0362 (9) | −0.0061 (9) | −0.0008 (8) | −0.0039 (8) |
C8 | 0.0406 (10) | 0.0456 (10) | 0.0369 (9) | −0.0042 (8) | −0.0007 (7) | −0.0043 (8) |
C9 | 0.0415 (10) | 0.0669 (14) | 0.0467 (11) | 0.0063 (9) | −0.0034 (9) | −0.0172 (10) |
C10 | 0.0410 (10) | 0.0857 (16) | 0.0365 (10) | −0.0008 (10) | 0.0006 (8) | −0.0160 (10) |
C11 | 0.0300 (9) | 0.0757 (14) | 0.0398 (10) | 0.0046 (9) | 0.0044 (8) | −0.0075 (10) |
C12 | 0.0768 (19) | 0.0713 (18) | 0.098 (2) | −0.0117 (15) | 0.0022 (16) | 0.0070 (16) |
S1—C8 | 1.6699 (19) | C3—C4 | 1.365 (4) |
O1—C7 | 1.220 (2) | C3—H3A | 0.9300 |
O2—C11 | 1.201 (2) | C4—C5 | 1.375 (3) |
O3—C11 | 1.331 (3) | C4—H4A | 0.9300 |
O3—C12 | 1.438 (3) | C5—C6 | 1.381 (3) |
N1—C7 | 1.373 (2) | C5—H5A | 0.9300 |
N1—C8 | 1.397 (2) | C6—C7 | 1.491 (3) |
N1—H1A | 0.8600 | C9—C10 | 1.514 (3) |
N2—C8 | 1.323 (2) | C9—H9A | 0.9700 |
N2—C9 | 1.454 (2) | C9—H9B | 0.9700 |
N2—H2A | 0.8600 | C10—C11 | 1.489 (3) |
C1—C2 | 1.387 (3) | C10—H10A | 0.9700 |
C1—C6 | 1.388 (3) | C10—H10B | 0.9700 |
C1—H1B | 0.9300 | C12—H12A | 0.9600 |
C2—C3 | 1.375 (4) | C12—H12B | 0.9600 |
C2—H2B | 0.9300 | C12—H12C | 0.9600 |
C11—O3—C12 | 116.5 (2) | O1—C7—C6 | 120.56 (18) |
C7—N1—C8 | 127.78 (16) | N1—C7—C6 | 116.94 (17) |
C7—N1—H1A | 116.1 | N2—C8—N1 | 116.04 (16) |
C8—N1—H1A | 116.1 | N2—C8—S1 | 125.16 (15) |
C8—N2—C9 | 124.28 (16) | N1—C8—S1 | 118.80 (14) |
C8—N2—H2A | 117.9 | N2—C9—C10 | 113.98 (18) |
C9—N2—H2A | 117.9 | N2—C9—H9A | 108.8 |
C2—C1—C6 | 119.8 (2) | C10—C9—H9A | 108.8 |
C2—C1—H1B | 120.1 | N2—C9—H9B | 108.8 |
C6—C1—H1B | 120.1 | C10—C9—H9B | 108.8 |
C3—C2—C1 | 120.0 (2) | H9A—C9—H9B | 107.7 |
C3—C2—H2B | 120.0 | C11—C10—C9 | 114.09 (17) |
C1—C2—H2B | 120.0 | C11—C10—H10A | 108.7 |
C4—C3—C2 | 120.5 (2) | C9—C10—H10A | 108.7 |
C4—C3—H3A | 119.8 | C11—C10—H10B | 108.7 |
C2—C3—H3A | 119.8 | C9—C10—H10B | 108.7 |
C3—C4—C5 | 119.8 (2) | H10A—C10—H10B | 107.6 |
C3—C4—H4A | 120.1 | O2—C11—O3 | 123.6 (2) |
C5—C4—H4A | 120.1 | O2—C11—C10 | 125.4 (2) |
C4—C5—C6 | 121.0 (2) | O3—C11—C10 | 110.98 (18) |
C4—C5—H5A | 119.5 | O3—C12—H12A | 109.5 |
C6—C5—H5A | 119.5 | O3—C12—H12B | 109.5 |
C5—C6—C1 | 118.93 (19) | H12A—C12—H12B | 109.5 |
C5—C6—C7 | 117.30 (18) | O3—C12—H12C | 109.5 |
C1—C6—C7 | 123.63 (18) | H12A—C12—H12C | 109.5 |
O1—C7—N1 | 122.51 (18) | H12B—C12—H12C | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O1 | 0.86 | 1.94 | 2.625 (2) | 136 |
N1—H1A···O2i | 0.86 | 2.17 | 3.022 (2) | 169 |
C1—H1B···O2i | 0.93 | 2.50 | 3.187 (3) | 130 |
C9—H9A···O1ii | 0.97 | 2.59 | 3.464 (3) | 150 |
Symmetry codes: (i) x+1, y, z; (ii) −x, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C12H14N2O3S |
Mr | 266.31 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 7.5901 (18), 8.2688 (19), 10.547 (3) |
α, β, γ (°) | 86.168 (5), 86.892 (4), 81.545 (4) |
V (Å3) | 652.6 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.25 |
Crystal size (mm) | 0.35 × 0.31 × 0.23 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2000) |
Tmin, Tmax | 0.918, 0.945 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8953, 3229, 2654 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.141, 1.12 |
No. of reflections | 3229 |
No. of parameters | 163 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.27, −0.22 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009), SHELXTL (Sheldrick, 2008), PARST (Nardelli, 1995) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O1 | 0.86 | 1.94 | 2.625 (2) | 136 |
N1—H1A···O2i | 0.86 | 2.17 | 3.022 (2) | 169 |
C1—H1B···O2i | 0.93 | 2.50 | 3.187 (3) | 130 |
C9—H9A···O1ii | 0.97 | 2.59 | 3.464 (3) | 150 |
Symmetry codes: (i) x+1, y, z; (ii) −x, −y+1, −z+1. |
Acknowledgements
The authors thank Universiti Kebangsaan Malaysia for providing facilities and grants (postdoctoral for INH, UKM-GUP-BTT-07–30-190 and UKM-OUP-TK-16–73/2010) and the Kementerian Pengajian Tinggi, Malaysia for the research fund No. UKM-ST-06-FRGS0111–2009.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound, I, is a methyl ester derivative of beta-alanine thiourea analogous to our previous reported, methyl-2-(3-benzoylthioureido)acetate, II (Hassan et al. 2009).
The molecule maintains the same cis-trans conformation with respect to the positions of the methyl propanoate and benzoyl groups, relative to the S atom across the C—N bonds (Fig 1), respectively. The phenyl group, [C1/C2/C3/C4/C5/C6], and the methyl propanoate fragment, [O2/O3/C10/C11/C12], are essentially planar and the dihedral angle between them is 82.28 (11)°. The bond lengths (Allen et al., 1987) and angles in the molecules are in normal ranges and comparable to those of II. The C=S bond length [1.670 (2) Å] is identical within experimental error to that of II [1.662 (5) Å]. The thiourea fragment,[S1/O1/N1/N2/C6/C7/C8/C9], is essentially planar with a maximum deviation of 0.037 (2) Å, at the atom N2. The phenyl ring [C1—C6] is inclined to the thiourea mean plane making a dihedral angle of 24.16 (9)° which is slightly larger than that of II [20.12 (19)°]. Atom O3 of the methyl propanoate group, (O2/O3/C10/C11/C12), has the maximum deviation 0.033 (2)Å from the mean plane.
There is one intramolecular hydrogen bonds, N2—H2A···O1 (Table 1) forming a pseudo-six-membered ring (N2/H2A/O1/C7/N1/C8). The intermolecular N1—H1A···O2, C1—H1B···O2 and C9—H9A···O1 hydrogen bonds, (Table 1), link the molecules into a chain parallel to the a axis (Fig 2).