organic compounds
(2E)-3-{4-[(1H-1,3-Benzimidazol-2-yl)methoxy]-3-ethoxyphenyl}-1-(4-bromophenyl)prop-2-en-1-one monohydrate
aDepartment of Chemistry, Keene State College, 229 Main Street, Keene, NH 03435-2001, USA, bDepartment of Studies in Chemistry, Mangalore University, Mangalagangotri 574 199, India, and cDepartment of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570 006, India
*Correspondence e-mail: jjasinski@keene.edu
In the title compound, C25H21BrN2O3·H2O, the benzimidazole fragment and the water molecule of crystallization are each disordered over two sets of sites of equal occupancy. The dihedral angles between the least-squares planes of the benzimidazole and the 3-ethoxy- and 4-bromobenzene rings are 86.9 (6) and 85.1 (1)°, respectively in one disorder component. The crystal packing is stabilized by intermolecular O—H⋯O, O—H⋯N and N—H⋯N hydrogen bonds, which link the molecules into chains along the a axis.
Related literature
For the biological activity of benzimidazoles, see: Pujar et al. (1988); Bouwman et al. (1990). For the use of benzimidazoles in pest control, see: Madkour et al. (2006). For the properties and uses of see: Dhar (1981); Dimmock et al. (1999); Satyanarayana et al. (2004); Sarojini et al. (2006). For related structures, see: Jian et al. (2003); Odabaşoğlu et al. (2007). For standard bond lengths, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2007); cell CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811008154/ez2232sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811008154/ez2232Isup2.hkl
A mixture of a 4-(1H-benzimidazol-2-ylmethoxy)-3-ethoxybenzaldehyde (0.005 mole) and p-bromo acetophenone (0.005 mole) in 50 ml ethanolic sodium hydroxide was stirred at 5–10°C for 3 h (Fig. 1), then maintained at room temperature for 24 h and poured into ice cold water. The precipitate that appeared after neutralization with dil. HCl was filtered off and recrystallized from 1,4-dioxane. The single crystals were grown from DMF by the slow evaporation method, with a yield of 85%. (m.p. 414 K). Analytical data: Found (Cald): C%: 62.89(62.90); H%: 4.39 (4.43); N%: 5.81 (5.87).
The C and N atoms in the benzimidazole fragment and O and H atoms in the water molecule are disordered and all placed at 0.50 (0) occupancy. The OW1A—H1W1, O1WA—H1W2, OW1B—H1W3, O1WB—H1W4 bond lengths were fixed at 0.82Å and the H1W1—H1W2, H1W3—H1W4 angular distances were fixed at 1.297 Å. The HN2B and H2BA atoms bonded to the disordered N2 (0.50 (0)) and N2B (0.50 (0)) atoms, respectively, were placed at their disordered sites and refined by the riding model. All of the remaining H atoms were placed in their calculated positions and then refined using the riding model with atom—H lengths of 0.93Å (CH), 0.97Å (CH2), 0.96Å (CH3) or 0.86Å (NH). Isotropic displacement parameters for these atoms were set to 1.19–1.20 (CH, CH2), 1.49 (CH3) or 1.19 (NH) times Ueq of the parent atom.
Data collection: CrysAlis PRO (Oxford Diffraction, 2007); cell
CrysAlis PRO (Oxford Diffraction, 2007); data reduction: CrysAlis RED (Oxford Diffraction, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Reaction scheme for (I). | |
Fig. 2. Molecular structure of the title compound showing the atom labeling scheme and 30% probability displacement ellipsoids. The disordered benzimidazol fragment has 0.50 (0) and 0.50 (0) occupancy components. Dashed lines indicate strong O—H···N intermolecular hydrogen bonds between O1WA and disordered N1 or N1B (0.50 (0) occupancy) atoms. | |
Fig. 3. Packing diagram of the title compound viewed down the a axis. Dashed lines indicate N—H···N, O—H···O and O—H···N intermolecular hydrogen bonds linking the molecules into one-dimensional chains. |
C25H21BrN2O3·H2O | F(000) = 2032 |
Mr = 495.36 | Dx = 1.478 Mg m−3 |
Orthorhombic, Pbcn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2n 2ab | Cell parameters from 4366 reflections |
a = 13.8406 (12) Å | θ = 5.0–32.7° |
b = 16.5192 (8) Å | µ = 1.88 mm−1 |
c = 19.4719 (13) Å | T = 295 K |
V = 4452.0 (5) Å3 | Prism, pale yellow |
Z = 8 | 0.52 × 0.38 × 0.31 mm |
Oxford Diffraction Xcalibur Ruby Gemini diffractometer | 4033 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 2083 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.073 |
Detector resolution: 10.5081 pixels mm-1 | θmax = 25.4°, θmin = 5.0° |
ω scans | h = −16→12 |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007) | k = −19→19 |
Tmin = 0.518, Tmax = 1.000 | l = −23→19 |
18755 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.058 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.160 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.068P)2 + 2.7272P] where P = (Fo2 + 2Fc2)/3 |
4033 reflections | (Δ/σ)max < 0.001 |
305 parameters | Δρmax = 0.46 e Å−3 |
114 restraints | Δρmin = −0.36 e Å−3 |
C25H21BrN2O3·H2O | V = 4452.0 (5) Å3 |
Mr = 495.36 | Z = 8 |
Orthorhombic, Pbcn | Mo Kα radiation |
a = 13.8406 (12) Å | µ = 1.88 mm−1 |
b = 16.5192 (8) Å | T = 295 K |
c = 19.4719 (13) Å | 0.52 × 0.38 × 0.31 mm |
Oxford Diffraction Xcalibur Ruby Gemini diffractometer | 4033 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007) | 2083 reflections with I > 2σ(I) |
Tmin = 0.518, Tmax = 1.000 | Rint = 0.073 |
18755 measured reflections |
R[F2 > 2σ(F2)] = 0.058 | 114 restraints |
wR(F2) = 0.160 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.46 e Å−3 |
4033 reflections | Δρmin = −0.36 e Å−3 |
305 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Br1 | 0.36419 (4) | −0.33624 (3) | 0.39000 (3) | 0.0699 (2) | |
O1 | 0.3916 (3) | 0.02167 (18) | 0.55959 (18) | 0.0678 (11) | |
O2 | 0.3780 (2) | 0.45425 (15) | 0.47027 (14) | 0.0491 (8) | |
O3 | 0.3733 (3) | 0.45641 (16) | 0.33737 (14) | 0.0564 (9) | |
C1 | 0.3652 (3) | −0.2277 (3) | 0.4205 (2) | 0.0483 (12) | |
C2 | 0.3675 (4) | −0.1650 (3) | 0.3743 (3) | 0.0595 (14) | |
H2A | 0.3669 | −0.1754 | 0.3274 | 0.071* | |
C3 | 0.3708 (4) | −0.0862 (3) | 0.3983 (2) | 0.0564 (14) | |
H3A | 0.3717 | −0.0436 | 0.3671 | 0.068* | |
C4 | 0.3727 (3) | −0.0700 (2) | 0.4679 (2) | 0.0440 (12) | |
C5 | 0.3679 (4) | −0.1340 (3) | 0.5130 (2) | 0.0579 (14) | |
H5A | 0.3680 | −0.1240 | 0.5600 | 0.069* | |
C6 | 0.3630 (4) | −0.2123 (3) | 0.4897 (3) | 0.0569 (14) | |
H6A | 0.3582 | −0.2548 | 0.5208 | 0.068* | |
C7 | 0.3810 (3) | 0.0138 (3) | 0.4975 (3) | 0.0475 (12) | |
C8 | 0.3796 (3) | 0.0841 (3) | 0.4527 (3) | 0.0532 (13) | |
H8A | 0.3674 | 0.0767 | 0.4061 | 0.064* | |
C9 | 0.3949 (3) | 0.1581 (2) | 0.4756 (2) | 0.0481 (12) | |
H9A | 0.4073 | 0.1623 | 0.5225 | 0.058* | |
C10 | 0.3952 (3) | 0.2344 (2) | 0.4375 (2) | 0.0443 (12) | |
C11 | 0.3915 (3) | 0.3077 (2) | 0.4727 (2) | 0.0453 (12) | |
H11A | 0.3936 | 0.3071 | 0.5204 | 0.054* | |
C12 | 0.3848 (3) | 0.3807 (2) | 0.4397 (2) | 0.0422 (12) | |
C13 | 0.3839 (3) | 0.3816 (3) | 0.3674 (2) | 0.0454 (12) | |
C14 | 0.3914 (4) | 0.3099 (3) | 0.3323 (2) | 0.0606 (15) | |
H14A | 0.3936 | 0.3107 | 0.2846 | 0.073* | |
C15 | 0.3957 (4) | 0.2361 (3) | 0.3664 (2) | 0.0568 (14) | |
H15A | 0.3989 | 0.1881 | 0.3416 | 0.068* | |
C16 | 0.3816 (4) | 0.4565 (3) | 0.5438 (2) | 0.0559 (14) | |
H16A | 0.4430 | 0.4355 | 0.5599 | 0.067* | |
H16B | 0.3302 | 0.4235 | 0.5630 | 0.067* | |
C17 | 0.3696 (4) | 0.5425 (3) | 0.5656 (3) | 0.0616 (15) | |
H17A | 0.3617 | 0.5449 | 0.6146 | 0.092* | |
H17B | 0.3137 | 0.5651 | 0.5437 | 0.092* | |
H17C | 0.4259 | 0.5729 | 0.5526 | 0.092* | |
C18 | 0.3559 (4) | 0.4556 (3) | 0.2653 (2) | 0.0596 (15) | |
H18A | 0.3025 | 0.4195 | 0.2550 | 0.072* | |
H18B | 0.4127 | 0.4361 | 0.2413 | 0.072* | |
C19 | 0.3322 (4) | 0.5392 (3) | 0.2419 (2) | 0.0507 (13) | |
N1 | 0.2329 (9) | 0.5577 (7) | 0.2317 (6) | 0.0470 (17) | 0.50 |
N2 | 0.3896 (9) | 0.5909 (8) | 0.2252 (6) | 0.0442 (16) | 0.50 |
H2B | 0.4515 | 0.5865 | 0.2258 | 0.053* | 0.50 |
C20 | 0.3371 (4) | 0.6595 (4) | 0.2046 (4) | 0.0440 (15) | 0.50 |
C21 | 0.3602 (4) | 0.7363 (4) | 0.1805 (4) | 0.058 (2) | 0.50 |
H21A | 0.4244 | 0.7528 | 0.1787 | 0.070* | 0.50 |
C22 | 0.2874 (5) | 0.7883 (4) | 0.1589 (4) | 0.048 (2) | 0.50 |
H22A | 0.3029 | 0.8397 | 0.1427 | 0.058* | 0.50 |
C23 | 0.1915 (4) | 0.7637 (4) | 0.1615 (4) | 0.049 (2) | 0.50 |
H23A | 0.1428 | 0.7985 | 0.1471 | 0.059* | 0.50 |
C24 | 0.1684 (4) | 0.6869 (4) | 0.1857 (4) | 0.055 (2) | 0.50 |
H24A | 0.1042 | 0.6704 | 0.1874 | 0.066* | 0.50 |
C25 | 0.2412 (5) | 0.6348 (4) | 0.2072 (4) | 0.0440 (15) | 0.50 |
O1WA | 0.0810 (8) | 0.4606 (6) | 0.2117 (5) | 0.098 (2) | 0.50 |
H1W1 | 0.036 (3) | 0.468 (5) | 0.239 (3) | 0.148* | 0.50 |
H1W2 | 0.121 (3) | 0.495 (4) | 0.222 (5) | 0.148* | 0.50 |
N1B | 0.2526 (10) | 0.5698 (8) | 0.2266 (7) | 0.0470 (17) | 0.50 |
N2B | 0.4086 (10) | 0.5968 (8) | 0.2335 (7) | 0.0442 (16) | 0.50 |
H2BA | 0.4690 | 0.5911 | 0.2426 | 0.053* | 0.50 |
C20B | 0.3630 (5) | 0.6620 (4) | 0.2080 (4) | 0.0440 (15) | 0.50 |
C21B | 0.3995 (4) | 0.7368 (4) | 0.1880 (4) | 0.058 (2) | 0.50 |
H21B | 0.4656 | 0.7467 | 0.1903 | 0.070* | 0.50 |
C22B | 0.3372 (5) | 0.7968 (4) | 0.1647 (4) | 0.048 (2) | 0.50 |
H22B | 0.3616 | 0.8469 | 0.1514 | 0.058* | 0.50 |
C23B | 0.2384 (5) | 0.7820 (4) | 0.1614 (4) | 0.049 (2) | 0.50 |
H23B | 0.1967 | 0.8222 | 0.1458 | 0.059* | 0.50 |
C24B | 0.2020 (4) | 0.7072 (5) | 0.1813 (5) | 0.055 (2) | 0.50 |
H24B | 0.1359 | 0.6973 | 0.1791 | 0.066* | 0.50 |
C25B | 0.2643 (5) | 0.6472 (4) | 0.2046 (4) | 0.0440 (15) | 0.50 |
O1WB | 0.0642 (8) | 0.5103 (6) | 0.2033 (5) | 0.098 (2) | 0.50 |
H1W3 | 0.082 (6) | 0.464 (2) | 0.199 (4) | 0.148* | 0.50 |
H1W4 | 0.050 (8) | 0.525 (5) | 0.165 (2) | 0.148* | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0949 (4) | 0.0427 (3) | 0.0722 (4) | 0.0038 (3) | 0.0105 (3) | −0.0083 (3) |
O1 | 0.104 (3) | 0.0461 (19) | 0.053 (2) | −0.0001 (19) | −0.008 (2) | 0.0056 (16) |
O2 | 0.081 (2) | 0.0316 (15) | 0.0344 (17) | 0.0001 (15) | −0.0072 (17) | −0.0021 (13) |
O3 | 0.102 (3) | 0.0329 (15) | 0.0340 (17) | −0.0041 (17) | −0.0102 (18) | 0.0018 (13) |
C1 | 0.060 (3) | 0.036 (2) | 0.049 (3) | 0.000 (2) | 0.017 (3) | 0.001 (2) |
C2 | 0.075 (4) | 0.049 (3) | 0.054 (3) | 0.006 (3) | 0.001 (3) | −0.002 (2) |
C3 | 0.073 (4) | 0.043 (2) | 0.053 (3) | 0.006 (3) | 0.005 (3) | 0.010 (2) |
C4 | 0.046 (3) | 0.039 (2) | 0.048 (3) | 0.001 (2) | 0.000 (2) | 0.004 (2) |
C5 | 0.081 (4) | 0.045 (3) | 0.048 (3) | −0.001 (3) | 0.005 (3) | 0.006 (2) |
C6 | 0.075 (4) | 0.036 (2) | 0.060 (3) | 0.005 (3) | 0.007 (3) | 0.012 (2) |
C7 | 0.049 (3) | 0.044 (3) | 0.049 (3) | 0.003 (2) | 0.001 (2) | 0.005 (2) |
C8 | 0.067 (4) | 0.040 (2) | 0.053 (3) | 0.000 (2) | −0.001 (3) | 0.006 (2) |
C9 | 0.058 (3) | 0.040 (2) | 0.047 (3) | 0.005 (2) | 0.000 (2) | 0.003 (2) |
C10 | 0.049 (3) | 0.035 (2) | 0.048 (3) | 0.004 (2) | −0.003 (2) | 0.002 (2) |
C11 | 0.059 (3) | 0.039 (2) | 0.038 (2) | 0.003 (2) | −0.007 (2) | −0.001 (2) |
C12 | 0.052 (3) | 0.032 (2) | 0.042 (3) | −0.001 (2) | 0.000 (2) | −0.003 (2) |
C13 | 0.064 (3) | 0.036 (2) | 0.037 (2) | −0.004 (2) | −0.005 (2) | 0.006 (2) |
C14 | 0.101 (4) | 0.040 (2) | 0.041 (3) | 0.003 (3) | 0.002 (3) | 0.002 (2) |
C15 | 0.088 (4) | 0.030 (2) | 0.052 (3) | 0.004 (2) | 0.003 (3) | −0.003 (2) |
C16 | 0.075 (4) | 0.048 (3) | 0.044 (3) | −0.001 (3) | −0.001 (3) | −0.002 (2) |
C17 | 0.086 (4) | 0.050 (3) | 0.049 (3) | −0.004 (3) | −0.004 (3) | −0.008 (2) |
C18 | 0.092 (4) | 0.041 (2) | 0.046 (3) | −0.002 (3) | −0.012 (3) | 0.005 (2) |
C19 | 0.069 (4) | 0.042 (3) | 0.041 (3) | −0.002 (3) | −0.006 (3) | −0.005 (2) |
N1 | 0.051 (4) | 0.049 (3) | 0.042 (2) | −0.004 (3) | −0.003 (3) | 0.000 (2) |
N2 | 0.046 (4) | 0.038 (2) | 0.049 (3) | 0.001 (2) | −0.007 (3) | 0.000 (2) |
C20 | 0.060 (4) | 0.040 (2) | 0.031 (2) | 0.005 (3) | 0.001 (3) | 0.000 (2) |
C21 | 0.064 (5) | 0.055 (3) | 0.055 (3) | −0.002 (4) | 0.009 (4) | 0.000 (3) |
C22 | 0.061 (6) | 0.040 (3) | 0.045 (3) | 0.008 (4) | 0.005 (4) | 0.001 (3) |
C23 | 0.064 (5) | 0.048 (4) | 0.035 (3) | 0.003 (4) | 0.002 (4) | −0.001 (3) |
C24 | 0.059 (4) | 0.070 (4) | 0.036 (3) | 0.003 (4) | −0.005 (3) | −0.014 (3) |
C25 | 0.053 (4) | 0.053 (3) | 0.026 (2) | 0.013 (3) | −0.007 (3) | −0.008 (2) |
O1WA | 0.090 (4) | 0.111 (5) | 0.094 (4) | −0.011 (4) | 0.004 (3) | −0.003 (4) |
N1B | 0.051 (4) | 0.049 (3) | 0.042 (2) | −0.004 (3) | −0.003 (3) | 0.000 (2) |
N2B | 0.046 (4) | 0.038 (2) | 0.049 (3) | 0.001 (2) | −0.007 (3) | 0.000 (2) |
C20B | 0.060 (4) | 0.040 (2) | 0.031 (2) | 0.005 (3) | 0.001 (3) | 0.000 (2) |
C21B | 0.064 (5) | 0.055 (3) | 0.055 (3) | −0.002 (4) | 0.009 (4) | 0.000 (3) |
C22B | 0.061 (6) | 0.040 (3) | 0.045 (3) | 0.008 (4) | 0.005 (4) | 0.001 (3) |
C23B | 0.064 (5) | 0.048 (4) | 0.035 (3) | 0.003 (4) | 0.002 (4) | −0.001 (3) |
C24B | 0.059 (4) | 0.070 (4) | 0.036 (3) | 0.003 (4) | −0.005 (3) | −0.014 (3) |
C25B | 0.053 (4) | 0.053 (3) | 0.026 (2) | 0.013 (3) | −0.007 (3) | −0.008 (2) |
O1WB | 0.090 (4) | 0.111 (5) | 0.094 (4) | −0.011 (4) | 0.004 (3) | −0.003 (4) |
Br1—C1 | 1.888 (4) | C18—H18B | 0.9700 |
O1—C7 | 1.225 (5) | C19—N2 | 1.212 (13) |
O2—C12 | 1.356 (5) | C19—N1B | 1.249 (14) |
O2—C16 | 1.433 (5) | C19—N1 | 1.422 (14) |
O3—C13 | 1.375 (5) | C19—N2B | 1.431 (14) |
O3—C18 | 1.424 (5) | N1—C25 | 1.365 (13) |
C1—C2 | 1.372 (6) | N2—C20 | 1.404 (14) |
C1—C6 | 1.372 (6) | N2—H2B | 0.8600 |
C2—C3 | 1.383 (6) | C20—C21 | 1.3900 |
C2—H2A | 0.9300 | C20—C25 | 1.3900 |
C3—C4 | 1.382 (6) | C21—C22 | 1.3900 |
C3—H3A | 0.9300 | C21—H21A | 0.9300 |
C4—C5 | 1.375 (6) | C22—C23 | 1.3900 |
C4—C7 | 1.504 (6) | C22—H22A | 0.9300 |
C5—C6 | 1.373 (6) | C23—C24 | 1.3900 |
C5—H5A | 0.9300 | C23—H23A | 0.9300 |
C6—H6A | 0.9300 | C24—C25 | 1.3900 |
C7—C8 | 1.452 (6) | C24—H24A | 0.9300 |
C8—C9 | 1.318 (6) | O1WA—H1W1 | 0.82 (2) |
C8—H8A | 0.9300 | O1WA—H1W2 | 0.82 (2) |
C9—C10 | 1.463 (6) | O1WA—H1W3 | 0.25 (9) |
C9—H9A | 0.9300 | O1WA—H1W4 | 1.47 (4) |
C10—C15 | 1.385 (7) | N1B—C25B | 1.359 (14) |
C10—C11 | 1.391 (6) | N2B—C20B | 1.343 (15) |
C11—C12 | 1.370 (6) | N2B—H2BA | 0.8600 |
C11—H11A | 0.9300 | C20B—C21B | 1.3900 |
C12—C13 | 1.407 (6) | C20B—C25B | 1.3900 |
C13—C14 | 1.371 (6) | C21B—C22B | 1.3900 |
C14—C15 | 1.390 (6) | C21B—H21B | 0.9300 |
C14—H14A | 0.9300 | C22B—C23B | 1.3900 |
C15—H15A | 0.9300 | C22B—H22B | 0.9300 |
C16—C17 | 1.493 (6) | C23B—C24B | 1.3900 |
C16—H16A | 0.9700 | C23B—H23B | 0.9300 |
C16—H16B | 0.9700 | C24B—C25B | 1.3900 |
C17—H17A | 0.9600 | C24B—H24B | 0.9300 |
C17—H17B | 0.9600 | O1WB—H1W1 | 1.05 (7) |
C17—H17C | 0.9600 | O1WB—H1W2 | 0.90 (8) |
C18—C19 | 1.490 (6) | O1WB—H1W3 | 0.82 (2) |
C18—H18A | 0.9700 | O1WB—H1W4 | 0.82 (2) |
C12—O2—C16 | 117.4 (3) | N2—C19—N1 | 116.4 (8) |
C13—O3—C18 | 115.4 (3) | N1B—C19—N1 | 13.2 (10) |
C2—C1—C6 | 120.3 (4) | N2—C19—N2B | 10.3 (11) |
C2—C1—Br1 | 120.7 (4) | N1B—C19—N2B | 110.8 (9) |
C6—C1—Br1 | 119.0 (3) | N1—C19—N2B | 123.7 (8) |
C1—C2—C3 | 119.4 (5) | N2—C19—C18 | 126.3 (8) |
C1—C2—H2A | 120.3 | N1B—C19—C18 | 129.9 (7) |
C3—C2—H2A | 120.3 | N1—C19—C18 | 117.0 (6) |
C4—C3—C2 | 120.9 (4) | N2B—C19—C18 | 119.3 (7) |
C4—C3—H3A | 119.5 | C25—N1—C19 | 99.7 (8) |
C2—C3—H3A | 119.5 | C19—N2—C20 | 107.9 (10) |
C5—C4—C3 | 118.4 (4) | C19—N2—H2B | 126.1 |
C5—C4—C7 | 117.8 (4) | C20—N2—H2B | 126.1 |
C3—C4—C7 | 123.8 (4) | C21—C20—C25 | 120.0 |
C6—C5—C4 | 121.0 (4) | C21—C20—N2 | 135.5 (7) |
C6—C5—H5A | 119.5 | C25—C20—N2 | 104.3 (6) |
C4—C5—H5A | 119.5 | C22—C21—C20 | 120.0 |
C1—C6—C5 | 119.9 (4) | C22—C21—H21A | 120.0 |
C1—C6—H6A | 120.0 | C20—C21—H21A | 120.0 |
C5—C6—H6A | 120.0 | C23—C22—C21 | 120.0 |
O1—C7—C8 | 120.7 (4) | C23—C22—H22A | 120.0 |
O1—C7—C4 | 119.0 (4) | C21—C22—H22A | 120.0 |
C8—C7—C4 | 120.3 (4) | C22—C23—C24 | 120.0 |
C9—C8—C7 | 122.3 (5) | C22—C23—H23A | 120.0 |
C9—C8—H8A | 118.8 | C24—C23—H23A | 120.0 |
C7—C8—H8A | 118.8 | C25—C24—C23 | 120.0 |
C8—C9—C10 | 128.8 (4) | C25—C24—H24A | 120.0 |
C8—C9—H9A | 115.6 | C23—C24—H24A | 120.0 |
C10—C9—H9A | 115.6 | N1—C25—C24 | 128.5 (7) |
C15—C10—C11 | 118.3 (4) | N1—C25—C20 | 111.5 (7) |
C15—C10—C9 | 121.6 (4) | C24—C25—C20 | 120.0 |
C11—C10—C9 | 120.0 (4) | H1W1—O1WA—H1W2 | 105 (3) |
C12—C11—C10 | 122.6 (4) | H1W1—O1WA—H1W3 | 131 (10) |
C12—C11—H11A | 118.7 | H1W2—O1WA—H1W3 | 92 (10) |
C10—C11—H11A | 118.7 | H1W1—O1WA—H1W4 | 94 (7) |
O2—C12—C11 | 126.0 (4) | H1W2—O1WA—H1W4 | 81 (9) |
O2—C12—C13 | 115.4 (4) | H1W3—O1WA—H1W4 | 43 (8) |
C11—C12—C13 | 118.6 (4) | C19—N1B—C25B | 110.6 (10) |
C14—C13—O3 | 124.9 (4) | C20B—N2B—C19 | 103.3 (10) |
C14—C13—C12 | 119.3 (4) | C20B—N2B—H2BA | 128.4 |
O3—C13—C12 | 115.8 (4) | C19—N2B—H2BA | 128.4 |
C13—C14—C15 | 121.5 (4) | N2B—C20B—C21B | 130.2 (7) |
C13—C14—H14A | 119.2 | N2B—C20B—C25B | 109.7 (7) |
C15—C14—H14A | 119.2 | C21B—C20B—C25B | 120.0 |
C10—C15—C14 | 119.6 (4) | C22B—C21B—C20B | 120.0 |
C10—C15—H15A | 120.2 | C22B—C21B—H21B | 120.0 |
C14—C15—H15A | 120.2 | C20B—C21B—H21B | 120.0 |
O2—C16—C17 | 107.8 (4) | C21B—C22B—C23B | 120.0 |
O2—C16—H16A | 110.2 | C21B—C22B—H22B | 120.0 |
C17—C16—H16A | 110.2 | C23B—C22B—H22B | 120.0 |
O2—C16—H16B | 110.2 | C24B—C23B—C22B | 120.0 |
C17—C16—H16B | 110.2 | C24B—C23B—H23B | 120.0 |
H16A—C16—H16B | 108.5 | C22B—C23B—H23B | 120.0 |
C16—C17—H17A | 109.5 | C23B—C24B—C25B | 120.0 |
C16—C17—H17B | 109.5 | C23B—C24B—H24B | 120.0 |
H17A—C17—H17B | 109.5 | C25B—C24B—H24B | 120.0 |
C16—C17—H17C | 109.5 | N1B—C25B—C24B | 134.5 (8) |
H17A—C17—H17C | 109.5 | N1B—C25B—C20B | 105.5 (8) |
H17B—C17—H17C | 109.5 | C24B—C25B—C20B | 120.0 |
O3—C18—C19 | 109.2 (4) | H1W1—O1WB—H1W2 | 83 (6) |
O3—C18—H18A | 109.8 | H1W1—O1WB—H1W3 | 64 (7) |
C19—C18—H18A | 109.8 | H1W2—O1WB—H1W3 | 60 (7) |
O3—C18—H18B | 109.8 | H1W1—O1WB—H1W4 | 136 (9) |
C19—C18—H18B | 109.8 | H1W2—O1WB—H1W4 | 131 (10) |
H18A—C18—H18B | 108.3 | H1W3—O1WB—H1W4 | 106 (3) |
N2—C19—N1B | 103.2 (9) | ||
C6—C1—C2—C3 | 2.1 (7) | N2B—C19—N1—C25 | 6.0 (13) |
Br1—C1—C2—C3 | −178.3 (4) | C18—C19—N1—C25 | −176.4 (6) |
C1—C2—C3—C4 | 0.6 (8) | N1B—C19—N2—C20 | 6.0 (12) |
C2—C3—C4—C5 | −2.2 (7) | N1—C19—N2—C20 | 4.7 (13) |
C2—C3—C4—C7 | 177.0 (4) | N2B—C19—N2—C20 | −132 (7) |
C3—C4—C5—C6 | 1.1 (7) | C18—C19—N2—C20 | 178.0 (6) |
C7—C4—C5—C6 | −178.1 (4) | C19—N2—C20—C21 | −179.9 (6) |
C2—C1—C6—C5 | −3.2 (8) | C19—N2—C20—C25 | −4.9 (10) |
Br1—C1—C6—C5 | 177.2 (4) | C25—C20—C21—C22 | 0.0 |
C4—C5—C6—C1 | 1.6 (8) | N2—C20—C21—C22 | 174.4 (10) |
C5—C4—C7—O1 | 6.2 (7) | C20—C21—C22—C23 | 0.0 |
C3—C4—C7—O1 | −172.9 (5) | C21—C22—C23—C24 | 0.0 |
C5—C4—C7—C8 | −175.7 (4) | C22—C23—C24—C25 | 0.0 |
C3—C4—C7—C8 | 5.1 (7) | C19—N1—C25—C24 | 178.4 (5) |
O1—C7—C8—C9 | 3.9 (7) | C19—N1—C25—C20 | −1.0 (9) |
C4—C7—C8—C9 | −174.1 (4) | C23—C24—C25—N1 | −179.4 (10) |
C7—C8—C9—C10 | −179.5 (4) | C23—C24—C25—C20 | 0.0 |
C8—C9—C10—C15 | −12.1 (8) | C21—C20—C25—N1 | 179.5 (8) |
C8—C9—C10—C11 | 165.7 (5) | N2—C20—C25—N1 | 3.5 (9) |
C15—C10—C11—C12 | 2.4 (7) | C21—C20—C25—C24 | 0.0 |
C9—C10—C11—C12 | −175.4 (4) | N2—C20—C25—C24 | −176.0 (7) |
C16—O2—C12—C11 | 2.4 (6) | N2—C19—N1B—C25B | −5.4 (13) |
C16—O2—C12—C13 | −178.1 (4) | N1—C19—N1B—C25B | 170 (6) |
C10—C11—C12—O2 | 177.9 (4) | N2B—C19—N1B—C25B | 2.0 (13) |
C10—C11—C12—C13 | −1.5 (7) | C18—C19—N1B—C25B | −177.0 (6) |
C18—O3—C13—C14 | 8.9 (7) | N2—C19—N2B—C20B | 41 (6) |
C18—O3—C13—C12 | −169.6 (4) | N1B—C19—N2B—C20B | −3.3 (12) |
O2—C12—C13—C14 | 179.4 (4) | N1—C19—N2B—C20B | −6.6 (13) |
C11—C12—C13—C14 | −1.1 (7) | C18—C19—N2B—C20B | 175.8 (6) |
O2—C12—C13—O3 | −1.9 (6) | C19—N2B—C20B—C21B | −178.7 (5) |
C11—C12—C13—O3 | 177.6 (4) | C19—N2B—C20B—C25B | 3.2 (10) |
O3—C13—C14—C15 | −175.8 (5) | N2B—C20B—C21B—C22B | −177.9 (10) |
C12—C13—C14—C15 | 2.7 (8) | C25B—C20B—C21B—C22B | 0.0 |
C11—C10—C15—C14 | −0.8 (7) | C20B—C21B—C22B—C23B | 0.0 |
C9—C10—C15—C14 | 177.0 (5) | C21B—C22B—C23B—C24B | 0.0 |
C13—C14—C15—C10 | −1.8 (8) | C22B—C23B—C24B—C25B | 0.0 |
C12—O2—C16—C17 | −178.2 (4) | C19—N1B—C25B—C24B | 179.4 (6) |
C13—O3—C18—C19 | 172.1 (4) | C19—N1B—C25B—C20B | 0.1 (12) |
O3—C18—C19—N2 | 86.4 (9) | C23B—C24B—C25B—N1B | −179.2 (11) |
O3—C18—C19—N1B | −103.7 (10) | C23B—C24B—C25B—C20B | 0.0 |
O3—C18—C19—N1 | −100.3 (7) | N2B—C20B—C25B—N1B | −2.3 (10) |
O3—C18—C19—N2B | 77.4 (8) | C21B—C20B—C25B—N1B | 179.4 (8) |
N2—C19—N1—C25 | −2.4 (12) | N2B—C20B—C25B—C24B | 178.3 (8) |
N1B—C19—N1—C25 | −8 (4) | C21B—C20B—C25B—C24B | 0.0 |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2B···N2Bi | 0.86 | 2.10 | 2.908 (9) | 157 |
N2B—H2BA···N2i | 0.86 | 2.06 | 2.908 (9) | 172 |
O1WA—H1W1···O1WAii | 0.82 (2) | 1.89 (3) | 2.69 (2) | 164 (7) |
O1WA—H1W2···N1 | 0.82 (2) | 1.87 (2) | 2.674 (16) | 166 (6) |
O1WA—H1W2···N1B | 0.82 (2) | 2.20 (3) | 2.997 (17) | 164 (6) |
O1WB—H1W4···O1iii | 0.82 (2) | 2.33 (7) | 2.912 (11) | 129 (8) |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x, y, −z+1/2; (iii) −x+1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C25H21BrN2O3·H2O |
Mr | 495.36 |
Crystal system, space group | Orthorhombic, Pbcn |
Temperature (K) | 295 |
a, b, c (Å) | 13.8406 (12), 16.5192 (8), 19.4719 (13) |
V (Å3) | 4452.0 (5) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 1.88 |
Crystal size (mm) | 0.52 × 0.38 × 0.31 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Ruby Gemini diffractometer |
Absorption correction | Multi-scan (CrysAlis RED; Oxford Diffraction, 2007) |
Tmin, Tmax | 0.518, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18755, 4033, 2083 |
Rint | 0.073 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.058, 0.160, 1.04 |
No. of reflections | 4033 |
No. of parameters | 305 |
No. of restraints | 114 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.46, −0.36 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2007), CrysAlis RED (Oxford Diffraction, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2B···N2Bi | 0.86 | 2.10 | 2.908 (9) | 157 |
N2B—H2BA···N2i | 0.86 | 2.06 | 2.908 (9) | 172 |
O1WA—H1W1···O1WAii | 0.82 (2) | 1.89 (3) | 2.69 (2) | 164 (7) |
O1WA—H1W2···N1 | 0.82 (2) | 1.87 (2) | 2.674 (16) | 166 (6) |
O1WA—H1W2···N1B | 0.82 (2) | 2.20 (3) | 2.997 (17) | 164 (6) |
O1WB—H1W4···O1iii | 0.82 (2) | 2.33 (7) | 2.912 (11) | 129 (8) |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x, y, −z+1/2; (iii) −x+1/2, −y+1/2, z−1/2. |
Acknowledgements
SS thanks Mangalore University and the UGC SAP for financial assistance for the purchase of chemicals. JPJ thanks Dr Ray J. Butcher and the Howard University Department of Chemistry for their assistance with the data collection. The diffractometer was funded by NSF grant No. CHE-0619278.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The benzimidazole ring system and its related compounds play an important role in pharmaceutical and agricultural fields due to their broad spectrum of biological activities (Pujar et al., 1988, Bouwman et al., 1990). The synthesis of novel benzimidazole derivatives remains a main focus of medicinal research. Benzimidazoles are also useful as insecticides, acaricides, nematocides, herbicides and other plant-protective agents in the field of pest control (Madkour et al., 2006). In recent years, attention has increasingly been given to the synthesis of benzimidazole derivatives as a source of new antimicrobial agents. In addition, benzimidazole derivatives have played a crucial role in the theoretical development of heterocyclic chemistry and are also used extensively in organic synthesis.
Chalcones constitute an important family of substances belonging to the flavonoids, a large group of natural and synthetic products with interesting physicochemical properties, biological activities and structural characteristics. Chalcones are highly reactive substances of varied nature. They have been reported to possess many interesting pharmacological activities (Dhar, 1981) including anti-inflammatory, antimicrobial, antifungal, antioxidant, cytotoxic, antitumor and anticancer activities (Dimmock et al., 1999; Satyanarayana et al., 2004). Chalcones are also finding application as organic nonlinear optical materials (NLO) for their SHG conversion efficiency (Sarojini et al., 2006).
The crystal structures of some benzimidazole derivatives viz., 2-chloromethyl-1H-benzimidazole nitrate (Jian et al., 2003) and 5-methoxy-1H-benzo[d]imidazole-2(3H)-thione (Odabaşoğlu et al., 2007) have been reported. Encouraged by the diverse biological activities of benzimidazoles and chalcones, it was decided to prepare a new chalcone derivative of 2-aryloxy methylbenzimidazole, thus bringing both types of functional groups together in a single molecule. This paper reports the crystal structure of the title compound, C25H21N2O3Br. H2O, (I).
In the title compound, (I), the benzimidazole fragment and an associated water molecule are each disordered over two positions in a ratio of 0.50 (0) and 0.50 (0) (Fig. 2). The dihedral angles between the least squares planes of the benzimidazol (0.50 (0) component) and the 3-ethoxy and 4-bromo benzene rings are 86.9 (6)° and 85.1 (1)°, respectively (Fig. 3). Bond distances and angles are in normal ranges (Allen et al., 1987). Crystal packing is stabilized by O—H···O, N—H···O and N—H···N intermolecular hydrogen bonds (Table 1) linking the molecules into one-dimensional chains along the a axis (Fig. 4).