organic compounds
3-[(E)-(4-Chlorobenzylidene)amino]-1-phenylthiourea
aSchool of Chemical Sciences and Food Technology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 Bangi, Malaysia, and bDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
In the title compound, C14H12ClN3S, the dihedral angle between the terminal benzene rings is 56.6 (2)°; the benzene rings lie to the same side of the molecule. The major twist in the molecule occurs around the Car—N bond (ar is aromatic) [C—N—C—C = 49.9 (5)°]. The configuration about the N=C bond [1.271 (4) Å] is E. The amine H atoms lie on opposite sides of the molecule with one forming an intramolecular N—H⋯N(imine) hydrogen bond and an S(5) ring. In the crystal, centrosymmetric dimers are formed via {⋯HNC=S}2 synthons.
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811008920/hb5814sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811008920/hb5814Isup2.hkl
The title compound was prepared by heating an ethanolic (50 ml) solution of 4-chlorobenzaldehyde (1.406 g, 10 mmol) and 4-phenylthiosemicarbazide (1.672 g, 10 mmol) under reflux for 1 h. The resulting product was isolated and recrystallized from DMSO to afford light pink plates in 72% yield (M.pt. 470–472 K). IR (KBr): Strong absorption bands for thiocarbonyl ν(C═S), azomethine ν(C═N) and hydrazinic nitrogen ν(N—N) appeared at 1199, 1600 and 1083 cm-1, respectively. Absorption bands for ν(C—Cl) and aromatic carbon ν(C═C) appeared at 833 and 1510 cm-1, respectively.
Carbon-bound H-atoms were placed in calculated positions (C—H 0.93 Å) and were included in the
in the riding model approximation, with Uiso(H) set to 1.2 to 1.5Uequiv(C). The N-bound H atoms were refined with the distance restraint 0.86±0.01 Å with Uiso(H) = 1.2Ueq(parent atom).Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell
CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis PRO (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C14H12ClN3S | F(000) = 600 |
Mr = 289.78 | Dx = 1.364 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 752 reflections |
a = 15.082 (5) Å | θ = 2.4–19.2° |
b = 6.560 (2) Å | µ = 0.41 mm−1 |
c = 15.205 (5) Å | T = 293 K |
β = 110.272 (8)° | Plate, light-pink |
V = 1411.2 (8) Å3 | 0.39 × 0.21 × 0.02 mm |
Z = 4 |
Oxford Diffraction Xcaliber Eos Gemini diffractometer | 2905 independent reflections |
Radiation source: fine-focus sealed tube | 1572 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.080 |
Detector resolution: 16.1952 pixels mm-1 | θmax = 26.5°, θmin = 1.6° |
ω scans | h = −17→18 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | k = −8→8 |
Tmin = 0.857, Tmax = 0.992 | l = −17→19 |
8647 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.068 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.137 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0511P)2] where P = (Fo2 + 2Fc2)/3 |
2905 reflections | (Δ/σ)max < 0.001 |
178 parameters | Δρmax = 0.32 e Å−3 |
2 restraints | Δρmin = −0.21 e Å−3 |
C14H12ClN3S | V = 1411.2 (8) Å3 |
Mr = 289.78 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 15.082 (5) Å | µ = 0.41 mm−1 |
b = 6.560 (2) Å | T = 293 K |
c = 15.205 (5) Å | 0.39 × 0.21 × 0.02 mm |
β = 110.272 (8)° |
Oxford Diffraction Xcaliber Eos Gemini diffractometer | 2905 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | 1572 reflections with I > 2σ(I) |
Tmin = 0.857, Tmax = 0.992 | Rint = 0.080 |
8647 measured reflections |
R[F2 > 2σ(F2)] = 0.068 | 2 restraints |
wR(F2) = 0.137 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.32 e Å−3 |
2905 reflections | Δρmin = −0.21 e Å−3 |
178 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.89088 (7) | 1.20521 (16) | 0.14891 (8) | 0.0759 (4) | |
S1 | 0.43050 (7) | −0.03791 (15) | 0.10962 (7) | 0.0525 (3) | |
N1 | 0.4748 (2) | 0.3287 (5) | 0.1918 (2) | 0.0506 (8) | |
H1n | 0.503 (2) | 0.441 (3) | 0.192 (3) | 0.061* | |
N2 | 0.5408 (2) | 0.2474 (4) | 0.0834 (2) | 0.0440 (8) | |
H2n | 0.548 (2) | 0.170 (4) | 0.0405 (18) | 0.053* | |
N3 | 0.58808 (19) | 0.4293 (4) | 0.1032 (2) | 0.0420 (7) | |
C1 | 0.4240 (2) | 0.3118 (6) | 0.2544 (3) | 0.0466 (9) | |
C2 | 0.4352 (3) | 0.1467 (6) | 0.3130 (3) | 0.0602 (11) | |
H2 | 0.4743 | 0.0395 | 0.3097 | 0.072* | |
C3 | 0.3891 (3) | 0.1397 (7) | 0.3761 (3) | 0.0720 (13) | |
H3 | 0.3972 | 0.0284 | 0.4159 | 0.086* | |
C4 | 0.3307 (3) | 0.2969 (8) | 0.3807 (3) | 0.0710 (13) | |
H4 | 0.2992 | 0.2918 | 0.4235 | 0.085* | |
C5 | 0.3189 (3) | 0.4607 (8) | 0.3223 (4) | 0.0758 (13) | |
H5 | 0.2785 | 0.5661 | 0.3244 | 0.091* | |
C6 | 0.3670 (3) | 0.4695 (6) | 0.2603 (3) | 0.0632 (11) | |
H6 | 0.3607 | 0.5833 | 0.2222 | 0.076* | |
C7 | 0.4841 (2) | 0.1899 (5) | 0.1310 (2) | 0.0409 (8) | |
C8 | 0.6458 (2) | 0.4670 (5) | 0.0611 (3) | 0.0433 (9) | |
H8 | 0.6524 | 0.3738 | 0.0177 | 0.052* | |
C9 | 0.7018 (2) | 0.6534 (5) | 0.0794 (2) | 0.0396 (8) | |
C10 | 0.6886 (2) | 0.8062 (5) | 0.1361 (2) | 0.0440 (9) | |
H10 | 0.6402 | 0.7943 | 0.1605 | 0.053* | |
C11 | 0.7458 (2) | 0.9755 (6) | 0.1570 (2) | 0.0497 (10) | |
H11 | 0.7366 | 1.0773 | 0.1955 | 0.060* | |
C12 | 0.8168 (2) | 0.9922 (5) | 0.1201 (3) | 0.0476 (9) | |
C13 | 0.8311 (3) | 0.8459 (6) | 0.0628 (3) | 0.0549 (11) | |
H13 | 0.8791 | 0.8599 | 0.0380 | 0.066* | |
C14 | 0.7732 (2) | 0.6764 (6) | 0.0421 (3) | 0.0529 (10) | |
H14 | 0.7821 | 0.5762 | 0.0027 | 0.063* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0720 (7) | 0.0538 (7) | 0.0900 (9) | −0.0255 (5) | 0.0129 (6) | 0.0056 (6) |
S1 | 0.0613 (6) | 0.0469 (6) | 0.0554 (6) | −0.0150 (5) | 0.0281 (5) | −0.0079 (5) |
N1 | 0.056 (2) | 0.045 (2) | 0.062 (2) | −0.0107 (15) | 0.0344 (17) | −0.0113 (18) |
N2 | 0.0534 (18) | 0.0379 (19) | 0.048 (2) | −0.0114 (14) | 0.0273 (16) | −0.0095 (14) |
N3 | 0.0434 (16) | 0.0386 (18) | 0.0456 (18) | −0.0051 (14) | 0.0173 (15) | −0.0023 (14) |
C1 | 0.042 (2) | 0.050 (2) | 0.050 (2) | −0.0068 (18) | 0.0194 (18) | −0.011 (2) |
C2 | 0.068 (3) | 0.061 (3) | 0.060 (3) | 0.009 (2) | 0.032 (2) | 0.004 (2) |
C3 | 0.095 (3) | 0.072 (3) | 0.061 (3) | 0.001 (3) | 0.043 (3) | 0.009 (2) |
C4 | 0.073 (3) | 0.092 (4) | 0.061 (3) | −0.012 (3) | 0.040 (2) | −0.012 (3) |
C5 | 0.077 (3) | 0.082 (4) | 0.082 (3) | 0.017 (3) | 0.045 (3) | −0.011 (3) |
C6 | 0.073 (3) | 0.058 (3) | 0.065 (3) | 0.006 (2) | 0.032 (2) | −0.005 (2) |
C7 | 0.040 (2) | 0.043 (2) | 0.041 (2) | 0.0024 (16) | 0.0163 (17) | 0.0000 (18) |
C8 | 0.050 (2) | 0.040 (2) | 0.047 (2) | −0.0006 (18) | 0.0249 (18) | −0.0053 (18) |
C9 | 0.044 (2) | 0.035 (2) | 0.041 (2) | −0.0015 (16) | 0.0162 (17) | 0.0026 (17) |
C10 | 0.044 (2) | 0.044 (2) | 0.046 (2) | −0.0034 (17) | 0.0181 (18) | 0.0005 (19) |
C11 | 0.058 (2) | 0.047 (2) | 0.042 (2) | 0.0007 (19) | 0.0145 (19) | −0.0001 (19) |
C12 | 0.047 (2) | 0.037 (2) | 0.052 (2) | −0.0047 (17) | 0.0082 (19) | 0.0098 (18) |
C13 | 0.053 (2) | 0.049 (3) | 0.073 (3) | −0.0016 (19) | 0.035 (2) | 0.014 (2) |
C14 | 0.062 (3) | 0.041 (2) | 0.065 (3) | −0.0015 (18) | 0.034 (2) | −0.002 (2) |
Cl1—C12 | 1.748 (4) | C4—H4 | 0.9300 |
S1—C7 | 1.676 (4) | C5—C6 | 1.374 (5) |
N1—C7 | 1.339 (4) | C5—H5 | 0.9300 |
N1—C1 | 1.419 (4) | C6—H6 | 0.9300 |
N1—H1n | 0.853 (10) | C8—C9 | 1.457 (4) |
N2—C7 | 1.352 (4) | C8—H8 | 0.9300 |
N2—N3 | 1.369 (4) | C9—C10 | 1.381 (4) |
N2—H2n | 0.863 (10) | C9—C14 | 1.387 (4) |
N3—C8 | 1.271 (4) | C10—C11 | 1.374 (4) |
C1—C6 | 1.368 (5) | C10—H10 | 0.9300 |
C1—C2 | 1.375 (5) | C11—C12 | 1.375 (5) |
C2—C3 | 1.366 (5) | C11—H11 | 0.9300 |
C2—H2 | 0.9300 | C12—C13 | 1.363 (5) |
C3—C4 | 1.374 (6) | C13—C14 | 1.381 (5) |
C3—H3 | 0.9300 | C13—H13 | 0.9300 |
C4—C5 | 1.366 (6) | C14—H14 | 0.9300 |
C7—N1—C1 | 128.3 (3) | N1—C7—N2 | 114.6 (3) |
C7—N1—H1n | 114 (3) | N1—C7—S1 | 125.6 (3) |
C1—N1—H1n | 117 (3) | N2—C7—S1 | 119.8 (3) |
C7—N2—N3 | 120.2 (3) | N3—C8—C9 | 121.4 (3) |
C7—N2—H2n | 121 (2) | N3—C8—H8 | 119.3 |
N3—N2—H2n | 119 (2) | C9—C8—H8 | 119.3 |
C8—N3—N2 | 117.1 (3) | C10—C9—C14 | 118.4 (3) |
C6—C1—C2 | 119.5 (4) | C10—C9—C8 | 121.9 (3) |
C6—C1—N1 | 118.9 (4) | C14—C9—C8 | 119.6 (3) |
C2—C1—N1 | 121.5 (3) | C11—C10—C9 | 121.1 (3) |
C3—C2—C1 | 120.2 (4) | C11—C10—H10 | 119.5 |
C3—C2—H2 | 119.9 | C9—C10—H10 | 119.5 |
C1—C2—H2 | 119.9 | C10—C11—C12 | 119.0 (4) |
C2—C3—C4 | 120.1 (4) | C10—C11—H11 | 120.5 |
C2—C3—H3 | 119.9 | C12—C11—H11 | 120.5 |
C4—C3—H3 | 119.9 | C13—C12—C11 | 121.5 (3) |
C5—C4—C3 | 119.9 (4) | C13—C12—Cl1 | 119.6 (3) |
C5—C4—H4 | 120.0 | C11—C12—Cl1 | 118.8 (3) |
C3—C4—H4 | 120.0 | C12—C13—C14 | 119.0 (3) |
C4—C5—C6 | 119.9 (4) | C12—C13—H13 | 120.5 |
C4—C5—H5 | 120.1 | C14—C13—H13 | 120.5 |
C6—C5—H5 | 120.1 | C13—C14—C9 | 120.9 (4) |
C1—C6—C5 | 120.4 (4) | C13—C14—H14 | 119.5 |
C1—C6—H6 | 119.8 | C9—C14—H14 | 119.5 |
C5—C6—H6 | 119.8 | ||
C7—N2—N3—C8 | 174.7 (3) | N3—N2—C7—S1 | −177.2 (2) |
C7—N1—C1—C6 | −134.1 (4) | N2—N3—C8—C9 | −178.1 (3) |
C7—N1—C1—C2 | 49.9 (5) | N3—C8—C9—C10 | −6.3 (5) |
C6—C1—C2—C3 | 0.5 (6) | N3—C8—C9—C14 | 171.1 (3) |
N1—C1—C2—C3 | 176.5 (4) | C14—C9—C10—C11 | −1.3 (5) |
C1—C2—C3—C4 | 0.5 (6) | C8—C9—C10—C11 | 176.1 (3) |
C2—C3—C4—C5 | −0.2 (7) | C9—C10—C11—C12 | 0.4 (5) |
C3—C4—C5—C6 | −1.2 (7) | C10—C11—C12—C13 | 0.6 (5) |
C2—C1—C6—C5 | −2.0 (6) | C10—C11—C12—Cl1 | −178.6 (3) |
N1—C1—C6—C5 | −178.1 (4) | C11—C12—C13—C14 | −0.5 (6) |
C4—C5—C6—C1 | 2.3 (6) | Cl1—C12—C13—C14 | 178.7 (3) |
C1—N1—C7—N2 | −177.2 (3) | C12—C13—C14—C9 | −0.5 (6) |
C1—N1—C7—S1 | 4.1 (5) | C10—C9—C14—C13 | 1.3 (5) |
N3—N2—C7—N1 | 4.1 (4) | C8—C9—C14—C13 | −176.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1n···N3 | 0.85 (2) | 2.16 (4) | 2.601 (4) | 112 (3) |
N2—H2n···S1i | 0.86 (3) | 2.57 (3) | 3.401 (3) | 164 (2) |
Symmetry code: (i) −x+1, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | C14H12ClN3S |
Mr | 289.78 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 15.082 (5), 6.560 (2), 15.205 (5) |
β (°) | 110.272 (8) |
V (Å3) | 1411.2 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.41 |
Crystal size (mm) | 0.39 × 0.21 × 0.02 |
Data collection | |
Diffractometer | Oxford Diffraction Xcaliber Eos Gemini diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) |
Tmin, Tmax | 0.857, 0.992 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8647, 2905, 1572 |
Rint | 0.080 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.068, 0.137, 1.00 |
No. of reflections | 2905 |
No. of parameters | 178 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.32, −0.21 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1n···N3 | 0.85 (2) | 2.16 (4) | 2.601 (4) | 112 (3) |
N2—H2n···S1i | 0.86 (3) | 2.57 (3) | 3.401 (3) | 164 (2) |
Symmetry code: (i) −x+1, −y, −z. |
Footnotes
‡Additional correspondence author, e-mail: farina@ukm.my.
Acknowledgements
We thank Universiti Kebangsaan Malaysia and the Ministry of Higher Education, Malaysia, for supporting this research through grants UKM-ST-06-FRGS112–2009 and UKM-GUP-NBT-08–27–112.
References
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The title compound, (I), was investigated in continuation of structural studies of substituted thiosemicarbazone molecules (Kayed et al., 2008). The configuration about the N3═C8 bond [1.271 (4) Å] in (I), Fig. 1, is E. The C1-benzene ring is twisted out of the plane of the thiourea moiety as seen in the value of the C7—N1—C1—C2 torsion angle of 49.9 (5) °; the dihedral angle between the C7,N1,N2,S1 [r.m.s. = 0.0155 Å] and C1–C6 planes is 51.06 (13) °. By contrast, the C9-benzene ring is co-planar with the imine moiety, with N3—C8—C9—C10 being -6.3 (5) °. The dihedral angle formed between the benzene rings is 56.6 (2) °. The amine groups lie on opposite sides of the molecule allowing for the formation of an intramolecular N1—H1n···N3 hydrogen bond, Table 1. The result is that the benzene rings lie to the same side of the molecule. Overall the conformation of the molecule is a twisted U-shape. The geometric parameters in and the overall conformation of (I) match very closely those found in the unsubstituted parent compound (Cunha et al., 2007).
The major feature of the crystal packing is the formation of centrosymmetric dimers via N—H···S hydrogen bonds, Table 1 and Fig. 2.