metal-organic compounds
Aquaglutarato(2,4,6-tri-2-pyridyl-1,3,5-triazine)nickel(II) trihydrate
aKey Laboratory of Applied Marine Biotechnology, Ministry of Education, Ningbo University, Ningbo 315211, People's Republic of China
*Correspondence e-mail: jinchunhua@nbu.edu.cn
In the title compound, [Ni(C5H6O4)(C18H12N6)(H2O)2]·3H2O, the NiII atom shows a distorted octahedral coordination by three N atoms of the tridentate chelating ligand and three O atoms of two aqua ligands and an O atom of one carboxylate group of the glutarate anion. Molecules are self-assembled via intermolecular O—H⋯O and O—H⋯N hydrogen-bonding interactions and π–π stacking interactions [centroid–centroid distance = 3.836 (3) Å] into a supramolecular network.
Related literature
For general background to 2,4,6-tris(2-pyridyl)-1,3,5-triazine (tptz), see: Glaser et al. (2004); Zibaseresht & Hartshorn (2005); Zheng et al. (2006); Zhou et al. (2007). For potential applications of tptz-containing complexes, see: Gupta et al. (1993); Witter & Luther (2002).
Experimental
Crystal data
|
Refinement
|
Data collection: RAPID-AUTO (Rigaku, 1998); cell RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536811006842/pk2302sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811006842/pk2302Isup2.hkl
Dropwise addition of 2.0 ml NaOH (1.0 M) to a stirred solution of NiCl2.6H2O (0.238 g, 1.00 mmol) in 5.0 ml H2O produced a green precipitate, which was then centrifuged and washed with double-distilled water until no Cl- anions were detectable. The collected precipitate and 2,4,6-tri(2-pyridyl)-1,3,5-triazine (tptz) (0.312 g, 1.00 mmol) were added to a stirred solution of glutaric acid (0.132 g, 1.00 mmol) in CH3OH/H2O (30.0 ml; 1:1 v/v). The resulting mixture was stirred for a further 30 min. After filtration, the dark green filtrate (pH = 5.12) was evaporated slowly at room temperature and afforded dark green crystals over two weeks (yield 45.4%, based on initial NiCl2 input).
All H atoms bound to C were position geometrically and refined as riding, with C-H = 0.93 Å and Uiso(H) = 1.2Ueq(C). H atoms attached to O atoms were found in a difference Fourier map and refined freely with Uiso(H) = 1.5Ueq(O).
Data collection: RAPID-AUTO (Rigaku, 1998); cell
RAPID-AUTO (Rigaku, 1998); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The asymmetric unit of the title compound, with the atom-labelling scheme. Displacement ellisoids are drawn at the 45% probability level. |
[Ni(C5H6O4)(C18H12N6)(H2O)2]·3H2O | Z = 2 |
Mr = 591.22 | F(000) = 616 |
Triclinic, P1 | Dx = 1.510 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.3437 (19) Å | Cell parameters from 10176 reflections |
b = 10.486 (2) Å | θ = 3.0–27.5° |
c = 14.320 (3) Å | µ = 0.81 mm−1 |
α = 83.09 (3)° | T = 295 K |
β = 87.16 (3)° | Block, dark green |
γ = 69.02 (3)° | 0.30 × 0.23 × 0.17 mm |
V = 1300.5 (5) Å3 |
Rigaku R-AXIS RAPID diffractometer | 5901 independent reflections |
Radiation source: fine-focus sealed tube | 4575 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
ω scans | θmax = 27.5°, θmin = 3.0° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −12→11 |
Tmin = 0.796, Tmax = 0.868 | k = −13→13 |
12866 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.087 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.14 | w = 1/[σ2(Fo2) + (0.0352P)2 + 0.3875P] where P = (Fo2 + 2Fc2)/3 |
5901 reflections | (Δ/σ)max < 0.001 |
382 parameters | Δρmax = 0.40 e Å−3 |
0 restraints | Δρmin = −0.38 e Å−3 |
[Ni(C5H6O4)(C18H12N6)(H2O)2]·3H2O | γ = 69.02 (3)° |
Mr = 591.22 | V = 1300.5 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.3437 (19) Å | Mo Kα radiation |
b = 10.486 (2) Å | µ = 0.81 mm−1 |
c = 14.320 (3) Å | T = 295 K |
α = 83.09 (3)° | 0.30 × 0.23 × 0.17 mm |
β = 87.16 (3)° |
Rigaku R-AXIS RAPID diffractometer | 5901 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 4575 reflections with I > 2σ(I) |
Tmin = 0.796, Tmax = 0.868 | Rint = 0.023 |
12866 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.087 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.14 | Δρmax = 0.40 e Å−3 |
5901 reflections | Δρmin = −0.38 e Å−3 |
382 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0.23523 (3) | 0.10184 (3) | 0.306650 (17) | 0.02922 (8) | |
N1 | 0.07072 (19) | 0.00148 (16) | 0.31671 (11) | 0.0314 (4) | |
N2 | 0.14608 (18) | 0.14756 (16) | 0.17850 (11) | 0.0279 (3) | |
N3 | 0.36324 (19) | 0.21923 (17) | 0.23120 (12) | 0.0338 (4) | |
N4 | −0.05102 (19) | 0.15524 (17) | 0.08066 (11) | 0.0317 (4) | |
N5 | 0.11453 (18) | 0.28123 (17) | 0.03247 (11) | 0.0318 (4) | |
N6 | −0.1961 (2) | 0.2413 (2) | −0.08469 (13) | 0.0474 (5) | |
C1 | 0.0402 (3) | −0.0764 (2) | 0.39029 (15) | 0.0399 (5) | |
H1A | 0.0992 | −0.0955 | 0.4441 | 0.048* | |
C2 | −0.0753 (3) | −0.1299 (2) | 0.38989 (16) | 0.0465 (6) | |
H2A | −0.0936 | −0.1833 | 0.4425 | 0.056* | |
C3 | −0.1624 (3) | −0.1029 (3) | 0.31043 (17) | 0.0495 (6) | |
H3A | −0.2409 | −0.1374 | 0.3087 | 0.059* | |
C4 | −0.1320 (2) | −0.0233 (2) | 0.23247 (16) | 0.0400 (5) | |
H4A | −0.1888 | −0.0043 | 0.1777 | 0.048* | |
C5 | −0.0149 (2) | 0.0266 (2) | 0.23880 (13) | 0.0299 (4) | |
C6 | 0.4845 (2) | 0.2426 (2) | 0.26107 (17) | 0.0409 (5) | |
H6A | 0.5158 | 0.2128 | 0.3231 | 0.049* | |
C7 | 0.5645 (3) | 0.3090 (2) | 0.20348 (18) | 0.0481 (6) | |
H7A | 0.6487 | 0.3228 | 0.2263 | 0.058* | |
C8 | 0.5187 (3) | 0.3547 (3) | 0.11206 (19) | 0.0494 (6) | |
H8A | 0.5718 | 0.3994 | 0.0723 | 0.059* | |
C9 | 0.3922 (3) | 0.3334 (2) | 0.07943 (16) | 0.0407 (5) | |
H9A | 0.3579 | 0.3643 | 0.0181 | 0.049* | |
C10 | 0.3190 (2) | 0.2646 (2) | 0.14127 (14) | 0.0309 (4) | |
C11 | 0.0268 (2) | 0.11409 (19) | 0.16027 (13) | 0.0282 (4) | |
C12 | 0.1862 (2) | 0.23092 (19) | 0.11369 (13) | 0.0287 (4) | |
C13 | −0.0020 (2) | 0.2389 (2) | 0.01894 (13) | 0.0297 (4) | |
C14 | −0.0849 (2) | 0.2889 (2) | −0.07149 (14) | 0.0305 (4) | |
C15 | −0.0487 (3) | 0.3795 (2) | −0.13838 (15) | 0.0416 (5) | |
H15A | 0.0281 | 0.4127 | −0.1275 | 0.050* | |
C16 | −0.1293 (3) | 0.4197 (3) | −0.22184 (16) | 0.0487 (6) | |
H16A | −0.1067 | 0.4802 | −0.2680 | 0.058* | |
C17 | −0.2416 (3) | 0.3701 (2) | −0.23610 (16) | 0.0464 (6) | |
H17A | −0.2965 | 0.3952 | −0.2919 | 0.056* | |
C18 | −0.2713 (3) | 0.2819 (3) | −0.16543 (18) | 0.0569 (7) | |
H18A | −0.3487 | 0.2486 | −0.1748 | 0.068* | |
O1 | 0.08747 (16) | 0.26850 (15) | 0.36329 (10) | 0.0393 (3) | |
O2 | −0.10065 (19) | 0.35714 (17) | 0.25867 (13) | 0.0557 (5) | |
O3 | −0.4597 (2) | 0.80336 (16) | 0.48537 (14) | 0.0665 (6) | |
O4 | −0.48137 (19) | 0.68559 (15) | 0.37304 (11) | 0.0473 (4) | |
C19 | −0.0383 (2) | 0.3554 (2) | 0.33396 (15) | 0.0348 (4) | |
C20 | −0.1175 (2) | 0.4682 (2) | 0.39654 (17) | 0.0432 (5) | |
H20A | −0.0432 | 0.4733 | 0.4395 | 0.052* | |
H20B | −0.1562 | 0.5556 | 0.3577 | 0.052* | |
C21 | −0.2492 (3) | 0.4441 (2) | 0.45288 (17) | 0.0451 (5) | |
H21A | −0.2093 | 0.3605 | 0.4956 | 0.054* | |
H21B | −0.3194 | 0.4314 | 0.4103 | 0.054* | |
C22 | −0.3360 (3) | 0.5631 (2) | 0.50912 (15) | 0.0426 (5) | |
H22A | −0.4034 | 0.5345 | 0.5536 | 0.051* | |
H22B | −0.2628 | 0.5831 | 0.5451 | 0.051* | |
C23 | −0.4307 (2) | 0.6938 (2) | 0.45040 (15) | 0.0353 (4) | |
O5 | 0.4055 (2) | −0.07320 (18) | 0.27026 (12) | 0.0506 (4) | |
H5B | 0.456 (4) | −0.079 (3) | 0.226 (2) | 0.076* | |
H5C | 0.443 (4) | −0.150 (3) | 0.306 (2) | 0.076* | |
O6 | 0.32425 (19) | 0.04577 (17) | 0.43739 (11) | 0.0427 (4) | |
H6B | 0.394 (3) | −0.034 (3) | 0.448 (2) | 0.064* | |
H6C | 0.352 (3) | 0.103 (3) | 0.458 (2) | 0.064* | |
O7 | 0.6705 (2) | −0.4023 (2) | 0.19485 (15) | 0.0600 (5) | |
H7B | 0.625 (4) | −0.384 (4) | 0.245 (2) | 0.090* | |
H7C | 0.747 (4) | −0.478 (4) | 0.205 (2) | 0.090* | |
O8 | 0.5802 (2) | −0.1346 (2) | 0.11286 (14) | 0.0567 (5) | |
H8B | 0.636 (4) | −0.095 (4) | 0.088 (2) | 0.085* | |
H8C | 0.633 (4) | −0.216 (4) | 0.133 (2) | 0.085* | |
O9 | 0.3067 (2) | −0.03481 (19) | −0.00273 (15) | 0.0595 (5) | |
H9B | 0.387 (4) | −0.074 (4) | 0.031 (2) | 0.089* | |
H9C | 0.262 (4) | −0.082 (4) | 0.002 (3) | 0.089* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.02710 (14) | 0.02892 (13) | 0.02707 (14) | −0.00368 (10) | −0.00675 (10) | −0.00274 (9) |
N1 | 0.0344 (9) | 0.0315 (8) | 0.0248 (8) | −0.0081 (7) | −0.0018 (7) | −0.0008 (7) |
N2 | 0.0265 (8) | 0.0294 (8) | 0.0266 (8) | −0.0086 (7) | −0.0031 (6) | −0.0017 (6) |
N3 | 0.0284 (8) | 0.0334 (9) | 0.0377 (9) | −0.0076 (7) | −0.0082 (7) | −0.0046 (7) |
N4 | 0.0321 (9) | 0.0362 (9) | 0.0275 (8) | −0.0137 (8) | −0.0061 (7) | 0.0023 (7) |
N5 | 0.0311 (9) | 0.0347 (9) | 0.0304 (8) | −0.0133 (7) | −0.0056 (7) | 0.0011 (7) |
N6 | 0.0540 (12) | 0.0591 (12) | 0.0383 (10) | −0.0351 (11) | −0.0199 (9) | 0.0150 (9) |
C1 | 0.0467 (13) | 0.0385 (11) | 0.0286 (10) | −0.0094 (10) | −0.0017 (9) | 0.0016 (9) |
C2 | 0.0496 (14) | 0.0460 (13) | 0.0390 (12) | −0.0158 (11) | 0.0067 (10) | 0.0076 (10) |
C3 | 0.0443 (13) | 0.0556 (14) | 0.0518 (14) | −0.0263 (12) | −0.0007 (11) | 0.0090 (12) |
C4 | 0.0375 (11) | 0.0441 (12) | 0.0394 (12) | −0.0175 (10) | −0.0052 (9) | 0.0037 (10) |
C5 | 0.0289 (10) | 0.0306 (10) | 0.0276 (10) | −0.0077 (8) | −0.0027 (8) | −0.0005 (8) |
C6 | 0.0345 (11) | 0.0425 (12) | 0.0457 (13) | −0.0124 (10) | −0.0143 (10) | −0.0029 (10) |
C7 | 0.0360 (12) | 0.0514 (14) | 0.0621 (16) | −0.0201 (11) | −0.0143 (11) | −0.0064 (12) |
C8 | 0.0426 (13) | 0.0548 (14) | 0.0588 (15) | −0.0276 (12) | 0.0003 (11) | −0.0043 (12) |
C9 | 0.0396 (12) | 0.0449 (12) | 0.0411 (12) | −0.0193 (10) | −0.0036 (10) | −0.0028 (10) |
C10 | 0.0282 (10) | 0.0300 (10) | 0.0338 (10) | −0.0087 (8) | −0.0032 (8) | −0.0040 (8) |
C11 | 0.0277 (9) | 0.0276 (9) | 0.0270 (9) | −0.0070 (8) | −0.0026 (8) | −0.0022 (7) |
C12 | 0.0280 (10) | 0.0279 (9) | 0.0281 (9) | −0.0070 (8) | −0.0022 (8) | −0.0026 (8) |
C13 | 0.0290 (10) | 0.0308 (10) | 0.0282 (10) | −0.0094 (8) | −0.0028 (8) | −0.0013 (8) |
C14 | 0.0304 (10) | 0.0312 (10) | 0.0294 (10) | −0.0107 (8) | −0.0044 (8) | 0.0001 (8) |
C15 | 0.0427 (12) | 0.0504 (13) | 0.0353 (11) | −0.0240 (11) | −0.0077 (9) | 0.0077 (10) |
C16 | 0.0547 (14) | 0.0554 (14) | 0.0344 (12) | −0.0228 (12) | −0.0046 (10) | 0.0139 (11) |
C17 | 0.0525 (14) | 0.0514 (13) | 0.0328 (11) | −0.0175 (12) | −0.0172 (10) | 0.0080 (10) |
C18 | 0.0647 (16) | 0.0673 (17) | 0.0505 (14) | −0.0409 (15) | −0.0305 (13) | 0.0161 (13) |
O1 | 0.0332 (8) | 0.0368 (8) | 0.0388 (8) | 0.0007 (6) | −0.0063 (6) | −0.0089 (6) |
O2 | 0.0422 (9) | 0.0523 (10) | 0.0592 (11) | 0.0077 (8) | −0.0209 (8) | −0.0240 (8) |
O3 | 0.0843 (14) | 0.0318 (8) | 0.0698 (12) | 0.0038 (9) | −0.0443 (11) | −0.0131 (8) |
O4 | 0.0576 (10) | 0.0363 (8) | 0.0385 (9) | −0.0028 (7) | −0.0146 (7) | −0.0057 (7) |
C19 | 0.0283 (10) | 0.0339 (10) | 0.0403 (11) | −0.0075 (9) | −0.0023 (9) | −0.0071 (9) |
C20 | 0.0323 (11) | 0.0402 (12) | 0.0548 (14) | −0.0055 (10) | −0.0065 (10) | −0.0173 (11) |
C21 | 0.0513 (14) | 0.0279 (10) | 0.0444 (13) | −0.0021 (10) | 0.0034 (11) | 0.0016 (9) |
C22 | 0.0467 (13) | 0.0358 (11) | 0.0321 (11) | 0.0000 (10) | 0.0002 (9) | 0.0000 (9) |
C23 | 0.0342 (11) | 0.0290 (10) | 0.0366 (11) | −0.0035 (9) | −0.0044 (9) | −0.0035 (8) |
O5 | 0.0563 (11) | 0.0361 (8) | 0.0383 (9) | 0.0071 (8) | 0.0062 (8) | 0.0002 (7) |
O6 | 0.0427 (9) | 0.0372 (8) | 0.0377 (8) | 0.0011 (7) | −0.0176 (7) | −0.0052 (7) |
O7 | 0.0537 (12) | 0.0469 (10) | 0.0649 (12) | −0.0047 (9) | −0.0044 (9) | 0.0092 (10) |
O8 | 0.0539 (11) | 0.0508 (10) | 0.0560 (11) | −0.0131 (9) | 0.0140 (9) | 0.0071 (9) |
O9 | 0.0596 (12) | 0.0499 (11) | 0.0728 (13) | −0.0290 (10) | −0.0019 (10) | 0.0093 (9) |
Ni1—N2 | 1.9862 (17) | C10—C12 | 1.488 (3) |
Ni1—O6 | 2.0203 (16) | C13—C14 | 1.482 (3) |
Ni1—O1 | 2.0300 (16) | C14—C15 | 1.383 (3) |
Ni1—O5 | 2.0563 (19) | C15—C16 | 1.383 (3) |
Ni1—N1 | 2.1426 (17) | C15—H15A | 0.9300 |
Ni1—N3 | 2.1723 (18) | C16—C17 | 1.360 (3) |
N1—C1 | 1.338 (3) | C16—H16A | 0.9300 |
N1—C5 | 1.350 (2) | C17—C18 | 1.374 (3) |
N2—C11 | 1.328 (2) | C17—H17A | 0.9300 |
N2—C12 | 1.331 (2) | C18—H18A | 0.9300 |
N3—C6 | 1.341 (3) | O1—C19 | 1.256 (2) |
N3—C10 | 1.349 (3) | O2—C19 | 1.246 (3) |
N4—C11 | 1.324 (2) | O3—C23 | 1.243 (3) |
N4—C13 | 1.350 (2) | O4—C23 | 1.250 (3) |
N5—C12 | 1.325 (2) | C19—C20 | 1.521 (3) |
N5—C13 | 1.344 (2) | C20—C21 | 1.517 (3) |
N6—C18 | 1.327 (3) | C20—H20A | 0.9700 |
N6—C14 | 1.333 (3) | C20—H20B | 0.9700 |
C1—C2 | 1.383 (3) | C21—C22 | 1.522 (3) |
C1—H1A | 0.9300 | C21—H21A | 0.9700 |
C2—C3 | 1.373 (3) | C21—H21B | 0.9700 |
C2—H2A | 0.9300 | C22—C23 | 1.516 (3) |
C3—C4 | 1.392 (3) | C22—H22A | 0.9700 |
C3—H3A | 0.9300 | C22—H22B | 0.9700 |
C4—C5 | 1.382 (3) | O5—H5B | 0.76 (3) |
C4—H4A | 0.9300 | O5—H5C | 0.87 (3) |
C5—C11 | 1.491 (3) | O6—H6B | 0.86 (3) |
C6—C7 | 1.378 (3) | O6—H6C | 0.83 (3) |
C6—H6A | 0.9300 | O7—H7B | 0.82 (4) |
C7—C8 | 1.373 (3) | O7—H7C | 0.86 (4) |
C7—H7A | 0.9300 | O8—H8B | 0.82 (3) |
C8—C9 | 1.391 (3) | O8—H8C | 0.85 (4) |
C8—H8A | 0.9300 | O9—H9B | 0.86 (3) |
C9—C10 | 1.382 (3) | O9—H9C | 0.75 (3) |
C9—H9A | 0.9300 | ||
N2—Ni1—O6 | 176.98 (7) | N4—C11—C5 | 122.12 (17) |
N2—Ni1—O1 | 97.21 (7) | N2—C11—C5 | 113.91 (16) |
O6—Ni1—O1 | 84.47 (7) | N5—C12—N2 | 123.69 (17) |
N2—Ni1—O5 | 92.47 (8) | N5—C12—C10 | 122.62 (17) |
O6—Ni1—O5 | 85.93 (8) | N2—C12—C10 | 113.68 (16) |
O1—Ni1—O5 | 170.19 (7) | N5—C13—N4 | 125.81 (17) |
N2—Ni1—N1 | 77.29 (7) | N5—C13—C14 | 117.32 (16) |
O6—Ni1—N1 | 100.17 (7) | N4—C13—C14 | 116.87 (16) |
O1—Ni1—N1 | 92.45 (6) | N6—C14—C15 | 121.97 (19) |
O5—Ni1—N1 | 91.20 (8) | N6—C14—C13 | 116.15 (17) |
N2—Ni1—N3 | 76.38 (7) | C15—C14—C13 | 121.88 (18) |
O6—Ni1—N3 | 106.09 (7) | C16—C15—C14 | 118.6 (2) |
O1—Ni1—N3 | 92.88 (7) | C16—C15—H15A | 120.7 |
O5—Ni1—N3 | 87.86 (7) | C14—C15—H15A | 120.7 |
N1—Ni1—N3 | 153.58 (6) | C17—C16—C15 | 119.7 (2) |
C1—N1—C5 | 117.66 (17) | C17—C16—H16A | 120.2 |
C1—N1—Ni1 | 128.33 (14) | C15—C16—H16A | 120.2 |
C5—N1—Ni1 | 113.96 (12) | C16—C17—C18 | 117.9 (2) |
C11—N2—C12 | 117.66 (16) | C16—C17—H17A | 121.1 |
C11—N2—Ni1 | 120.20 (13) | C18—C17—H17A | 121.1 |
C12—N2—Ni1 | 121.24 (13) | N6—C18—C17 | 123.9 (2) |
C6—N3—C10 | 117.70 (18) | N6—C18—H18A | 118.0 |
C6—N3—Ni1 | 128.03 (15) | C17—C18—H18A | 118.0 |
C10—N3—Ni1 | 114.10 (13) | C19—O1—Ni1 | 130.93 (14) |
C11—N4—C13 | 114.29 (16) | O2—C19—O1 | 125.7 (2) |
C12—N5—C13 | 114.55 (16) | O2—C19—C20 | 118.44 (19) |
C18—N6—C14 | 117.96 (18) | O1—C19—C20 | 115.89 (19) |
N1—C1—C2 | 122.9 (2) | C21—C20—C19 | 112.55 (18) |
N1—C1—H1A | 118.5 | C21—C20—H20A | 109.1 |
C2—C1—H1A | 118.5 | C19—C20—H20A | 109.1 |
C3—C2—C1 | 118.9 (2) | C21—C20—H20B | 109.1 |
C3—C2—H2A | 120.6 | C19—C20—H20B | 109.1 |
C1—C2—H2A | 120.6 | H20A—C20—H20B | 107.8 |
C2—C3—C4 | 119.4 (2) | C20—C21—C22 | 112.16 (19) |
C2—C3—H3A | 120.3 | C20—C21—H21A | 109.2 |
C4—C3—H3A | 120.3 | C22—C21—H21A | 109.2 |
C5—C4—C3 | 118.1 (2) | C20—C21—H21B | 109.2 |
C5—C4—H4A | 121.0 | C22—C21—H21B | 109.2 |
C3—C4—H4A | 121.0 | H21A—C21—H21B | 107.9 |
N1—C5—C4 | 123.05 (18) | C23—C22—C21 | 114.68 (18) |
N1—C5—C11 | 114.11 (16) | C23—C22—H22A | 108.6 |
C4—C5—C11 | 122.83 (18) | C21—C22—H22A | 108.6 |
N3—C6—C7 | 122.6 (2) | C23—C22—H22B | 108.6 |
N3—C6—H6A | 118.7 | C21—C22—H22B | 108.6 |
C7—C6—H6A | 118.7 | H22A—C22—H22B | 107.6 |
C8—C7—C6 | 119.3 (2) | O3—C23—O4 | 123.91 (19) |
C8—C7—H7A | 120.3 | O3—C23—C22 | 116.88 (19) |
C6—C7—H7A | 120.3 | O4—C23—C22 | 119.10 (19) |
C7—C8—C9 | 119.4 (2) | Ni1—O5—H5B | 126 (3) |
C7—C8—H8A | 120.3 | Ni1—O5—H5C | 126 (2) |
C9—C8—H8A | 120.3 | H5B—O5—H5C | 107 (3) |
C10—C9—C8 | 117.8 (2) | Ni1—O6—H6B | 117 (2) |
C10—C9—H9A | 121.1 | Ni1—O6—H6C | 115 (2) |
C8—C9—H9A | 121.1 | H6B—O6—H6C | 109 (3) |
N3—C10—C9 | 123.23 (18) | H7B—O7—H7C | 109 (3) |
N3—C10—C12 | 113.92 (17) | H8B—O8—H8C | 110 (3) |
C9—C10—C12 | 122.83 (18) | H9B—O9—H9C | 107 (3) |
N4—C11—N2 | 123.96 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5B···O8 | 0.77 (3) | 1.97 (3) | 2.719 (3) | 167 (3) |
O5—H5C···O4i | 0.87 (3) | 1.79 (3) | 2.651 (2) | 176 (4) |
O6—H6B···O3i | 0.86 (2) | 1.80 (3) | 2.655 (2) | 173 (3) |
O6—H6C···O3ii | 0.82 (3) | 1.90 (3) | 2.706 (3) | 166 (3) |
O7—H7B···O4i | 0.82 (3) | 2.12 (3) | 2.940 (3) | 172 (3) |
O7—H7C···O2i | 0.86 (4) | 1.91 (4) | 2.747 (3) | 166 (3) |
O8—H8B···O9iii | 0.82 (4) | 1.92 (4) | 2.695 (3) | 157 (4) |
O8—H8C···O7 | 0.84 (4) | 1.96 (4) | 2.753 (3) | 156 (4) |
O9—H9B···O8 | 0.86 (4) | 2.06 (4) | 2.907 (3) | 170 (4) |
O9—H9C···N6iv | 0.75 (4) | 2.18 (4) | 2.854 (3) | 150 (4) |
Symmetry codes: (i) x+1, y−1, z; (ii) −x, −y+1, −z+1; (iii) −x+1, −y, −z; (iv) −x, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | [Ni(C5H6O4)(C18H12N6)(H2O)2]·3H2O |
Mr | 591.22 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 295 |
a, b, c (Å) | 9.3437 (19), 10.486 (2), 14.320 (3) |
α, β, γ (°) | 83.09 (3), 87.16 (3), 69.02 (3) |
V (Å3) | 1300.5 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.81 |
Crystal size (mm) | 0.30 × 0.23 × 0.17 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.796, 0.868 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12866, 5901, 4575 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.087, 1.14 |
No. of reflections | 5901 |
No. of parameters | 382 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.40, −0.38 |
Computer programs: RAPID-AUTO (Rigaku, 1998), CrystalStructure (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP in SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5B···O8 | 0.77 (3) | 1.97 (3) | 2.719 (3) | 167 (3) |
O5—H5C···O4i | 0.87 (3) | 1.79 (3) | 2.651 (2) | 176 (4) |
O6—H6B···O3i | 0.86 (2) | 1.80 (3) | 2.655 (2) | 173 (3) |
O6—H6C···O3ii | 0.82 (3) | 1.90 (3) | 2.706 (3) | 166 (3) |
O7—H7B···O4i | 0.82 (3) | 2.12 (3) | 2.940 (3) | 172 (3) |
O7—H7C···O2i | 0.86 (4) | 1.91 (4) | 2.747 (3) | 166 (3) |
O8—H8B···O9iii | 0.82 (4) | 1.92 (4) | 2.695 (3) | 157 (4) |
O8—H8C···O7 | 0.84 (4) | 1.96 (4) | 2.753 (3) | 156 (4) |
O9—H9B···O8 | 0.86 (4) | 2.06 (4) | 2.907 (3) | 170 (4) |
O9—H9C···N6iv | 0.75 (4) | 2.18 (4) | 2.854 (3) | 150 (4) |
Symmetry codes: (i) x+1, y−1, z; (ii) −x, −y+1, −z+1; (iii) −x+1, −y, −z; (iv) −x, −y, −z. |
Acknowledgements
This project was sponsored by the K. C. Wong Magna Fund in Ningbo University, the Science and Technology Department of Zhejiang Province (2009C03017-4), the 863 National High-Tech Research and Development Plan (2007AA10Z409), the Natural Science Foundation of Zhejiang Province (project No. Y307542) and the Science and Technology Department of Ningbo City (2006C100036).
References
Glaser, T., Lügger, T. & Fröhlich, R. (2004). Eur. J. Inorg. Chem. pp. 394–400. CrossRef Google Scholar
Gupta, N., Grover, N., Neyhart, G. A., Singh, P. & Thorp, H. H. (1993). Inorg. Chem. 32, 310–316 CrossRef CAS Google Scholar
Higashi, T. (1995). ABSCOR. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku (1998). RAPID-AUTO. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku/MSC (2004). CrystalStructure. Rigaku/MSC Inc., The Woodlands, Texas, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Witter, A. E. & Luther, G. W. (2002). Mar. Chem. 77, 143–156. CrossRef CAS Google Scholar
Zheng, Y. Q., Xu, W., Lin, F. & Fang, G. S. (2006). J. Coord. Chem. 59, 1825–1834. Web of Science CSD CrossRef CAS Google Scholar
Zhou, X. P., Zhang, X. J., Lin, S. H. & Li, D. (2007). Cryst. Growth Des. 7, 485–487. CSD CrossRef CAS Google Scholar
Zibaseresht, R. & Hartshorn, R. M. (2005). Aust. J. Chem. 58, 345–353. CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
As an interesting polydentate nitrogen donor ligand, 2,4,6-tris(2-pyridyl)-1,3,5-triazine (tptz) has attracted increasing attention in the synthesis of novel transition metal complexes (Glaser, et al., 2004; Zibaseresht & Hartshorn, 2005; Zheng, et al., 2006; Zhou, et al., 2007). It was applied in the extraction and separation of metal ions, and in the preparation of DNA cleaving agents. It has also been widely empolyed to determine the concentration of mono- and polysaccharides in seawater (Gupta, et al., 1993; Witter & Luther, et al., 2002). Our interest in tptz transition metal complexes prompts us to report a new tptz containing structure, [Ni(C18H12N6)(C5H6O4)(H2O)2].3H2O, obtained by self-assembly from NiII, tptz and glutaric acid in aqueous methanolic solution.
The title compound, consists of [Ni(C18H12N6)(C5H6O4)(H2O)2] complex molecules and three lattice waters, as shown in Fig. 1, in which the Ni atoms are in a distorted octahedral coordination environment defined by three N atoms of one tridentate tptz ligand and three O atoms of two aqua ligands and the glutarate group. Three nitrogen atoms (N1, N2 and N3) from the tptz ligand and one O atom (O6) of water molecule form the equatorial base, while the carboxylate O atom (O1) and the other water ligand O atom (O5) occupy the axial positions. Ni-N distances vary from 1.986 (2) to 2.173 (2) Å, and the Ni-O bond distances fall in the region 2.021 (2) to 2.056 (2) Å. The deviation from the ideal octahedral geometry is indicated by the difference in cisoid [76.38 (7)°-106.06 (7)°] and transoid angles [153.59 (6)°-177.01 (7)°]. In the tptz ligand, the C(sp2)-C(sp2) distances within the ring are normal [1.373 (4)-1.392 (2) Å], and the exterior bond distances, 1.482 (3)-1.491 (3) Å, are also normal. The tptz ligands deviate little from planarity, the three pyridyl rings are twisted with respect to the central triazine ring by angles of 3.4 (2)°, 4.1 (1)° and 8.6 (1)° with the N3 ring displaying the highest degree of twisting. The [Ni(C18H12N6)(C5H6O4)(H2O)2] complex molecules are assembled into a 3D network by hydrogen bonds between the coordinated water and lattice water molecules and the carboxylate group and pyridyl nitrogen atoms with the distances from 2.651 (4) Å to 2.938 (5) Å (Table 1). The crystal structure is also stabilized by intermolecular π-π stacking interactions between tptz ligands [centroid-centroid distance = 3.836 (3) Å].