organic compounds
Diethyl [(3-cyano-1-phenylsulfonyl-1H-indol-2-yl)methyl]phosphonate
aDepartment of Physics, RKM Vivekananda College (Autonomous), Chennai 600 004, India, bDepartment of Organic Chemistry, University of Madras, Maraimalai Campus, Chennai 600 025, India, and cCentre of Advanced Study in Crystallography and Biophysics, University of Madras, Maraimalai Campus, Chennai 600 025, India
*Correspondence e-mail: ksethusankar@yahoo.co.in
In the title compound, C20H21N2O5PS, the indole ring is essentially planar, with a maximum deviation of −0.0083 (18) Å. The methyl C atom of the methylphosphonate group and the S atom lie 0.104 (2) and −0.2158 (6) Å, respectively, from the indole mean plane. The sulfonyl-bound phenyl ring is almost perpendicular to the indole ring system, with a dihedral angle of 82.30 (8)°. The ethyl side chains are disordered over two sets of sites, with occupancy factors of 0.737 (5)/0.263 (5) and 0.529 (11)/0.471 (11). In the crystal, molecules are linked into centrosymmetric dimers via C—H⋯O hydrogen bonds, resulting in an R22(18) graph-set motif. The is further stabilized by C—H⋯π interactions.
Related literature
For applications of indole derivatives, see: Stevenson et al. (2000); Ho et al. (1986); Rajeswaran et al. (1999). For comparison of molecular dimensions, see: Bassindale (1984); Sethu Sankar et al. (2002); Allen (1981). For graph-set motif notations, see: Bernstein et al. (1995).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811008038/pv2393sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811008038/pv2393Isup2.hkl
To a solution of 2-(bromomethyl)-1-phenylsulfonyl-indole-3-carbonitrile (1 mmol) and triethylphosphite (1.2 mmol) in dry dichloromethane (10 ml) at room temperature, ZnBr2 (0.2 mmol) was added and allowed to stir for 2 h under N2. After consumption of the bromo compound (monitored by TLC) volatile components were removed under vacuo. The residual mass was poured over crushed ice (200 g) containing conc. HCl (5 ml). The precipitated solid was filtered, washed with water and dried to give crude phosphonate ester. The crude product was purified by flash
to provide the title compound which was recrystalized from a mixture of 50% ethylacetate in pure hexane.All the hydrogen atoms weree fixed geometrically and allowed to ride on their parent atoms with C—H distance in the range 0.93Å to 0.97Å and with Uiso(H) = 1.5Ueq(C) for CH3 groups and Uiso(H) = 1.2Ueq(C) for all the other H-atoms.
Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound showing 30% probability displacement ellipsoids. Ethyl groups attached on O4 are disordered. | |
Fig. 2. A unit cell packing of the crystal structure of the title compound, showing H-bonds. |
C20H21N2O5PS | Z = 2 |
Mr = 432.42 | F(000) = 452 |
Triclinic, P1 | Dx = 1.363 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.198 (5) Å | Cell parameters from 5172 reflections |
b = 11.229 (5) Å | θ = 1.0–28.2° |
c = 11.992 (5) Å | µ = 0.26 mm−1 |
α = 65.569 (5)° | T = 293 K |
β = 72.950 (5)° | Block, colourless |
γ = 72.204 (5)° | 0.23 × 0.20 × 0.20 mm |
V = 1053.7 (9) Å3 |
Bruker SMART APEXII area-detector diffractometer | 4201 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.025 |
Graphite monochromator | θmax = 28.2°, θmin = 1.9° |
ω scans | h = −12→12 |
19331 measured reflections | k = −14→14 |
5172 independent reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.126 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0647P)2 + 0.2952P] where P = (Fo2 + 2Fc2)/3 |
5172 reflections | (Δ/σ)max < 0.001 |
284 parameters | Δρmax = 0.28 e Å−3 |
10 restraints | Δρmin = −0.33 e Å−3 |
C20H21N2O5PS | γ = 72.204 (5)° |
Mr = 432.42 | V = 1053.7 (9) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.198 (5) Å | Mo Kα radiation |
b = 11.229 (5) Å | µ = 0.26 mm−1 |
c = 11.992 (5) Å | T = 293 K |
α = 65.569 (5)° | 0.23 × 0.20 × 0.20 mm |
β = 72.950 (5)° |
Bruker SMART APEXII area-detector diffractometer | 4201 reflections with I > 2σ(I) |
19331 measured reflections | Rint = 0.025 |
5172 independent reflections |
R[F2 > 2σ(F2)] = 0.042 | 10 restraints |
wR(F2) = 0.126 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.28 e Å−3 |
5172 reflections | Δρmin = −0.33 e Å−3 |
284 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.29990 (18) | 0.07457 (15) | 0.89632 (14) | 0.0423 (3) | |
C2 | 0.1831 (2) | 0.03001 (18) | 0.99695 (17) | 0.0517 (4) | |
H2 | 0.0877 | 0.0869 | 1.0109 | 0.062* | |
C3 | 0.2138 (2) | −0.10164 (19) | 1.07533 (18) | 0.0581 (4) | |
H3 | 0.1379 | −0.1337 | 1.1438 | 0.070* | |
C4 | 0.3557 (2) | −0.18786 (19) | 1.05461 (19) | 0.0600 (5) | |
H4 | 0.3727 | −0.2763 | 1.1089 | 0.072* | |
C5 | 0.4706 (2) | −0.14371 (18) | 0.95485 (18) | 0.0556 (4) | |
H5 | 0.5651 | −0.2015 | 0.9406 | 0.067* | |
C6 | 0.44273 (18) | −0.01035 (16) | 0.87526 (15) | 0.0446 (3) | |
C7 | 0.53430 (19) | 0.06663 (18) | 0.76474 (16) | 0.0483 (4) | |
C8 | 0.45078 (19) | 0.19408 (17) | 0.72042 (15) | 0.0460 (3) | |
C9 | 0.19475 (17) | 0.38218 (15) | 0.91760 (14) | 0.0411 (3) | |
C10 | 0.29566 (19) | 0.46655 (16) | 0.88290 (16) | 0.0475 (4) | |
H10 | 0.3488 | 0.4974 | 0.8010 | 0.057* | |
C11 | 0.3155 (2) | 0.50389 (19) | 0.97293 (19) | 0.0570 (4) | |
H11 | 0.3817 | 0.5614 | 0.9512 | 0.068* | |
C12 | 0.2382 (2) | 0.4566 (2) | 1.09435 (19) | 0.0602 (5) | |
H12 | 0.2535 | 0.4816 | 1.1543 | 0.072* | |
C13 | 0.1383 (2) | 0.3728 (2) | 1.12775 (17) | 0.0588 (4) | |
H13 | 0.0868 | 0.3410 | 1.2101 | 0.071* | |
C14 | 0.11430 (19) | 0.33556 (17) | 1.03911 (16) | 0.0497 (4) | |
H14 | 0.0454 | 0.2803 | 1.0607 | 0.060* | |
C15 | 0.4982 (2) | 0.30307 (19) | 0.60283 (17) | 0.0569 (4) | |
H15A | 0.6102 | 0.2928 | 0.5868 | 0.068* | |
H15B | 0.4507 | 0.3885 | 0.6136 | 0.068* | |
C16 | 0.6889 (2) | 0.0160 (2) | 0.7105 (2) | 0.0619 (5) | |
N1 | 0.30429 (16) | 0.20145 (13) | 0.79986 (12) | 0.0447 (3) | |
N2 | 0.8120 (2) | −0.0289 (2) | 0.6719 (2) | 0.0908 (6) | |
O1 | 0.02186 (14) | 0.29595 (14) | 0.84344 (14) | 0.0623 (3) | |
O2 | 0.19567 (18) | 0.44146 (13) | 0.68448 (12) | 0.0643 (4) | |
O3 | 0.5622 (2) | 0.17770 (18) | 0.44876 (15) | 0.0926 (6) | |
O4 | 0.2857 (2) | 0.26002 (16) | 0.52126 (14) | 0.0762 (4) | |
O5 | 0.4461 (2) | 0.42928 (16) | 0.36258 (14) | 0.0822 (5) | |
P1 | 0.44364 (7) | 0.30451 (5) | 0.46950 (4) | 0.06049 (16) | |
S1 | 0.16477 (5) | 0.33911 (4) | 0.80224 (4) | 0.04691 (13) | |
C17 | 0.5975 (4) | 0.1469 (4) | 0.3410 (3) | 0.0885 (12) | 0.737 (5) |
H17A | 0.5380 | 0.2176 | 0.2809 | 0.106* | 0.737 (5) |
H17B | 0.5646 | 0.0648 | 0.3618 | 0.106* | 0.737 (5) |
C18 | 0.7638 (6) | 0.1305 (6) | 0.2820 (5) | 0.1064 (15) | 0.737 (5) |
H18A | 0.7789 | 0.1097 | 0.2089 | 0.160* | 0.737 (5) |
H18B | 0.8237 | 0.0591 | 0.3398 | 0.160* | 0.737 (5) |
H18C | 0.7971 | 0.2122 | 0.2588 | 0.160* | 0.737 (5) |
C17' | 0.7241 (10) | 0.1678 (10) | 0.3780 (9) | 0.086 (3) | 0.263 (5) |
H17C | 0.7981 | 0.1300 | 0.4334 | 0.103* | 0.263 (5) |
H17D | 0.7422 | 0.2546 | 0.3186 | 0.103* | 0.263 (5) |
C18' | 0.734 (2) | 0.0762 (17) | 0.3133 (16) | 0.1064 (15) | 0.263 (5) |
H18D | 0.8365 | 0.0629 | 0.2635 | 0.160* | 0.263 (5) |
H18E | 0.6585 | 0.1152 | 0.2605 | 0.160* | 0.263 (5) |
H18F | 0.7145 | −0.0083 | 0.3741 | 0.160* | 0.263 (5) |
C20 | 0.010 (2) | 0.284 (3) | 0.543 (3) | 0.097 (3) | 0.471 (11) |
H20A | −0.0705 | 0.3064 | 0.4969 | 0.146* | 0.471 (11) |
H20B | −0.0126 | 0.3450 | 0.5855 | 0.146* | 0.471 (11) |
H20C | 0.0135 | 0.1942 | 0.6030 | 0.146* | 0.471 (11) |
C19 | 0.1657 (12) | 0.2917 (14) | 0.4538 (10) | 0.0901 (19) | 0.471 (11) |
H19A | 0.1887 | 0.2294 | 0.4109 | 0.108* | 0.471 (11) |
H19B | 0.1612 | 0.3812 | 0.3916 | 0.108* | 0.471 (11) |
C19' | 0.1460 (10) | 0.3402 (10) | 0.4735 (9) | 0.0901 (19) | 0.529 (11) |
H19C | 0.1681 | 0.3736 | 0.3830 | 0.108* | 0.529 (11) |
H19D | 0.1046 | 0.4160 | 0.5013 | 0.108* | 0.529 (11) |
C20' | 0.031 (2) | 0.250 (2) | 0.524 (3) | 0.097 (3) | 0.529 (11) |
H20D | −0.0640 | 0.2992 | 0.4932 | 0.146* | 0.529 (11) |
H20E | 0.0086 | 0.2188 | 0.6134 | 0.146* | 0.529 (11) |
H20F | 0.0737 | 0.1748 | 0.4968 | 0.146* | 0.529 (11) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0458 (8) | 0.0407 (7) | 0.0454 (8) | −0.0100 (6) | −0.0116 (6) | −0.0177 (6) |
C2 | 0.0478 (9) | 0.0529 (9) | 0.0565 (10) | −0.0140 (7) | −0.0071 (7) | −0.0213 (8) |
C3 | 0.0648 (11) | 0.0585 (10) | 0.0547 (10) | −0.0280 (9) | −0.0091 (8) | −0.0148 (8) |
C4 | 0.0738 (12) | 0.0454 (9) | 0.0643 (11) | −0.0148 (8) | −0.0257 (9) | −0.0130 (8) |
C5 | 0.0589 (10) | 0.0480 (9) | 0.0654 (11) | −0.0010 (8) | −0.0247 (8) | −0.0242 (8) |
C6 | 0.0459 (8) | 0.0472 (8) | 0.0501 (8) | −0.0088 (6) | −0.0133 (6) | −0.0241 (7) |
C7 | 0.0452 (8) | 0.0564 (9) | 0.0525 (9) | −0.0110 (7) | −0.0076 (7) | −0.0293 (8) |
C8 | 0.0500 (8) | 0.0523 (9) | 0.0453 (8) | −0.0169 (7) | −0.0039 (6) | −0.0258 (7) |
C9 | 0.0399 (7) | 0.0385 (7) | 0.0432 (8) | −0.0019 (6) | −0.0098 (6) | −0.0163 (6) |
C10 | 0.0467 (8) | 0.0443 (8) | 0.0478 (8) | −0.0078 (6) | −0.0086 (7) | −0.0144 (7) |
C11 | 0.0567 (10) | 0.0517 (9) | 0.0700 (12) | −0.0097 (8) | −0.0208 (9) | −0.0244 (9) |
C12 | 0.0672 (11) | 0.0608 (11) | 0.0595 (11) | 0.0017 (9) | −0.0225 (9) | −0.0319 (9) |
C13 | 0.0642 (11) | 0.0598 (10) | 0.0447 (9) | −0.0009 (8) | −0.0066 (8) | −0.0223 (8) |
C14 | 0.0470 (8) | 0.0458 (8) | 0.0501 (9) | −0.0070 (7) | −0.0026 (7) | −0.0177 (7) |
C15 | 0.0676 (11) | 0.0574 (10) | 0.0538 (10) | −0.0297 (9) | 0.0026 (8) | −0.0256 (8) |
C16 | 0.0532 (10) | 0.0684 (12) | 0.0672 (12) | −0.0110 (9) | −0.0046 (8) | −0.0332 (10) |
N1 | 0.0486 (7) | 0.0414 (7) | 0.0446 (7) | −0.0091 (5) | −0.0059 (5) | −0.0181 (6) |
N2 | 0.0581 (11) | 0.1031 (16) | 0.1028 (16) | −0.0033 (10) | 0.0044 (10) | −0.0518 (13) |
O1 | 0.0479 (7) | 0.0622 (8) | 0.0876 (10) | −0.0041 (6) | −0.0241 (6) | −0.0349 (7) |
O2 | 0.0906 (10) | 0.0512 (7) | 0.0476 (7) | −0.0059 (7) | −0.0263 (6) | −0.0120 (6) |
O3 | 0.1255 (15) | 0.0875 (12) | 0.0632 (9) | −0.0091 (10) | −0.0062 (9) | −0.0427 (9) |
O4 | 0.0941 (11) | 0.0808 (10) | 0.0583 (8) | −0.0476 (9) | −0.0170 (7) | −0.0070 (7) |
O5 | 0.1092 (13) | 0.0757 (10) | 0.0518 (8) | −0.0455 (9) | 0.0009 (8) | −0.0060 (7) |
P1 | 0.0823 (4) | 0.0591 (3) | 0.0423 (2) | −0.0321 (3) | 0.0031 (2) | −0.0183 (2) |
S1 | 0.0508 (2) | 0.0430 (2) | 0.0495 (2) | −0.00350 (16) | −0.01729 (17) | −0.01830 (17) |
C17 | 0.103 (3) | 0.107 (3) | 0.077 (2) | −0.028 (2) | 0.0013 (18) | −0.062 (2) |
C18 | 0.099 (3) | 0.115 (5) | 0.101 (3) | −0.021 (3) | 0.007 (2) | −0.053 (4) |
C17' | 0.110 (8) | 0.073 (6) | 0.079 (6) | −0.026 (5) | −0.010 (5) | −0.034 (5) |
C18' | 0.099 (3) | 0.115 (5) | 0.101 (3) | −0.021 (3) | 0.007 (2) | −0.053 (4) |
C20 | 0.088 (5) | 0.105 (10) | 0.103 (8) | −0.031 (7) | −0.025 (3) | −0.029 (5) |
C19 | 0.113 (3) | 0.114 (6) | 0.056 (3) | −0.046 (4) | −0.028 (3) | −0.018 (3) |
C19' | 0.113 (3) | 0.114 (6) | 0.056 (3) | −0.046 (4) | −0.028 (3) | −0.018 (3) |
C20' | 0.088 (5) | 0.105 (10) | 0.103 (8) | −0.031 (7) | −0.025 (3) | −0.029 (5) |
C1—C2 | 1.389 (2) | O1—S1 | 1.4203 (15) |
C1—C6 | 1.392 (2) | O2—S1 | 1.4204 (14) |
C1—N1 | 1.419 (2) | O3—C17 | 1.396 (3) |
C2—C3 | 1.378 (3) | O3—C17' | 1.478 (8) |
C2—H2 | 0.9300 | O3—P1 | 1.5696 (19) |
C3—C4 | 1.392 (3) | O4—C19 | 1.430 (7) |
C3—H3 | 0.9300 | O4—C19' | 1.444 (7) |
C4—C5 | 1.372 (3) | O4—P1 | 1.5506 (17) |
C4—H4 | 0.9300 | O5—P1 | 1.4573 (16) |
C5—C6 | 1.395 (2) | C17—C18 | 1.475 (6) |
C5—H5 | 0.9300 | C17—H17A | 0.9700 |
C6—C7 | 1.434 (2) | C17—H17B | 0.9700 |
C7—C8 | 1.363 (3) | C18—H18A | 0.9600 |
C7—C16 | 1.428 (3) | C18—H18B | 0.9600 |
C8—N1 | 1.405 (2) | C18—H18C | 0.9600 |
C8—C15 | 1.488 (2) | C17'—C18' | 1.492 (9) |
C9—C10 | 1.385 (2) | C17'—H17C | 0.9700 |
C9—C14 | 1.385 (2) | C17'—H17D | 0.9700 |
C9—S1 | 1.7556 (17) | C18'—H18D | 0.9600 |
C10—C11 | 1.383 (3) | C18'—H18E | 0.9600 |
C10—H10 | 0.9300 | C18'—H18F | 0.9600 |
C11—C12 | 1.376 (3) | C20—C19 | 1.521 (9) |
C11—H11 | 0.9300 | C20—H20A | 0.9600 |
C12—C13 | 1.375 (3) | C20—H20B | 0.9600 |
C12—H12 | 0.9300 | C20—H20C | 0.9600 |
C13—C14 | 1.384 (3) | C19—H19A | 0.9700 |
C13—H13 | 0.9300 | C19—H19B | 0.9700 |
C14—H14 | 0.9300 | C19'—C20' | 1.515 (9) |
C15—P1 | 1.804 (2) | C19'—H19C | 0.9700 |
C15—H15A | 0.9700 | C19'—H19D | 0.9700 |
C15—H15B | 0.9700 | C20'—H20D | 0.9600 |
C16—N2 | 1.134 (3) | C20'—H20E | 0.9600 |
N1—S1 | 1.6851 (15) | C20'—H20F | 0.9600 |
C2—C1—C6 | 121.35 (15) | O5—P1—O3 | 115.78 (10) |
C2—C1—N1 | 131.13 (15) | O4—P1—O3 | 103.59 (11) |
C6—C1—N1 | 107.51 (14) | O5—P1—C15 | 114.48 (10) |
C3—C2—C1 | 117.49 (17) | O4—P1—C15 | 104.97 (9) |
C3—C2—H2 | 121.3 | O3—P1—C15 | 100.51 (10) |
C1—C2—H2 | 121.3 | O1—S1—O2 | 120.66 (9) |
C2—C3—C4 | 121.69 (18) | O1—S1—N1 | 105.36 (8) |
C2—C3—H3 | 119.2 | O2—S1—N1 | 106.99 (8) |
C4—C3—H3 | 119.2 | O1—S1—C9 | 109.21 (8) |
C5—C4—C3 | 120.69 (17) | O2—S1—C9 | 108.82 (8) |
C5—C4—H4 | 119.7 | N1—S1—C9 | 104.60 (7) |
C3—C4—H4 | 119.7 | O3—C17—C18 | 114.3 (3) |
C4—C5—C6 | 118.56 (17) | O3—C17—H17A | 108.7 |
C4—C5—H5 | 120.7 | C18—C17—H17A | 108.7 |
C6—C5—H5 | 120.7 | O3—C17—H17B | 108.7 |
C1—C6—C5 | 120.20 (16) | C18—C17—H17B | 108.7 |
C1—C6—C7 | 106.83 (15) | H17A—C17—H17B | 107.6 |
C5—C6—C7 | 132.95 (16) | C17—C18—H18A | 109.5 |
C8—C7—C16 | 125.87 (17) | C17—C18—H18B | 109.5 |
C8—C7—C6 | 109.50 (15) | H18A—C18—H18B | 109.5 |
C16—C7—C6 | 124.63 (17) | C17—C18—H18C | 109.5 |
C7—C8—N1 | 107.61 (15) | H18A—C18—H18C | 109.5 |
C7—C8—C15 | 126.79 (16) | H18B—C18—H18C | 109.5 |
N1—C8—C15 | 125.36 (16) | O3—C17'—C18' | 102.5 (9) |
C10—C9—C14 | 121.57 (15) | O3—C17'—H17C | 111.3 |
C10—C9—S1 | 118.43 (12) | C18'—C17'—H17C | 111.3 |
C14—C9—S1 | 119.97 (13) | O3—C17'—H17D | 111.3 |
C11—C10—C9 | 118.44 (16) | C18'—C17'—H17D | 111.3 |
C11—C10—H10 | 120.8 | H17C—C17'—H17D | 109.2 |
C9—C10—H10 | 120.8 | C17'—C18'—H18D | 109.5 |
C12—C11—C10 | 120.57 (18) | C17'—C18'—H18E | 109.5 |
C12—C11—H11 | 119.7 | H18D—C18'—H18E | 109.5 |
C10—C11—H11 | 119.7 | C17'—C18'—H18F | 109.5 |
C13—C12—C11 | 120.47 (17) | H18D—C18'—H18F | 109.5 |
C13—C12—H12 | 119.8 | H18E—C18'—H18F | 109.5 |
C11—C12—H12 | 119.8 | C19—C20—H20A | 109.5 |
C12—C13—C14 | 120.18 (17) | C19—C20—H20B | 109.5 |
C12—C13—H13 | 119.9 | H20A—C20—H20B | 109.5 |
C14—C13—H13 | 119.9 | C19—C20—H20C | 109.5 |
C13—C14—C9 | 118.76 (17) | H20A—C20—H20C | 109.5 |
C13—C14—H14 | 120.6 | H20B—C20—H20C | 109.5 |
C9—C14—H14 | 120.6 | O4—C19—C20 | 110.0 (15) |
C8—C15—P1 | 113.12 (12) | O4—C19—H19A | 109.7 |
C8—C15—H15A | 109.0 | C20—C19—H19A | 109.7 |
P1—C15—H15A | 109.0 | O4—C19—H19B | 109.7 |
C8—C15—H15B | 109.0 | C20—C19—H19B | 109.7 |
P1—C15—H15B | 109.0 | H19A—C19—H19B | 108.2 |
H15A—C15—H15B | 107.8 | O4—C19'—C20' | 106.7 (13) |
N2—C16—C7 | 177.1 (3) | O4—C19'—H19C | 110.4 |
C8—N1—C1 | 108.54 (13) | C20'—C19'—H19C | 110.4 |
C8—N1—S1 | 127.93 (12) | O4—C19'—H19D | 110.4 |
C1—N1—S1 | 122.66 (11) | C20'—C19'—H19D | 110.4 |
C17—O3—C17' | 61.5 (4) | H19C—C19'—H19D | 108.6 |
C17—O3—P1 | 125.4 (2) | C19'—C20'—H20D | 109.5 |
C17'—O3—P1 | 128.4 (4) | C19'—C20'—H20E | 109.5 |
C19—O4—C19' | 25.7 (4) | H20D—C20'—H20E | 109.5 |
C19—O4—P1 | 127.1 (5) | C19'—C20'—H20F | 109.5 |
C19'—O4—P1 | 122.9 (4) | H20D—C20'—H20F | 109.5 |
O5—P1—O4 | 115.69 (10) | H20E—C20'—H20F | 109.5 |
C6—C1—C2—C3 | 0.0 (2) | C2—C1—N1—S1 | 9.9 (2) |
N1—C1—C2—C3 | 179.38 (16) | C6—C1—N1—S1 | −170.65 (11) |
C1—C2—C3—C4 | −0.6 (3) | C19—O4—P1—O5 | 26.8 (7) |
C2—C3—C4—C5 | 0.3 (3) | C19'—O4—P1—O5 | −4.2 (5) |
C3—C4—C5—C6 | 0.5 (3) | C19—O4—P1—O3 | −100.9 (7) |
C2—C1—C6—C5 | 0.8 (2) | C19'—O4—P1—O3 | −132.0 (5) |
N1—C1—C6—C5 | −178.67 (14) | C19—O4—P1—C15 | 154.1 (7) |
C2—C1—C6—C7 | 179.62 (15) | C19'—O4—P1—C15 | 123.0 (5) |
N1—C1—C6—C7 | 0.10 (17) | C17—O3—P1—O5 | −40.6 (3) |
C4—C5—C6—C1 | −1.1 (2) | C17'—O3—P1—O5 | 38.8 (6) |
C4—C5—C6—C7 | −179.47 (17) | C17—O3—P1—O4 | 87.1 (3) |
C1—C6—C7—C8 | 0.37 (18) | C17'—O3—P1—O4 | 166.5 (5) |
C5—C6—C7—C8 | 178.91 (17) | C17—O3—P1—C15 | −164.5 (2) |
C1—C6—C7—C16 | −179.50 (16) | C17'—O3—P1—C15 | −85.1 (6) |
C5—C6—C7—C16 | −1.0 (3) | C8—C15—P1—O5 | 162.95 (14) |
C16—C7—C8—N1 | 179.19 (16) | C8—C15—P1—O4 | 35.01 (16) |
C6—C7—C8—N1 | −0.68 (18) | C8—C15—P1—O3 | −72.26 (16) |
C16—C7—C8—C15 | 4.6 (3) | C8—N1—S1—O1 | 149.41 (14) |
C6—C7—C8—C15 | −175.22 (15) | C1—N1—S1—O1 | −42.48 (14) |
C14—C9—C10—C11 | 0.2 (2) | C8—N1—S1—O2 | 19.85 (16) |
S1—C9—C10—C11 | 177.98 (12) | C1—N1—S1—O2 | −172.04 (12) |
C9—C10—C11—C12 | 0.9 (3) | C8—N1—S1—C9 | −95.50 (15) |
C10—C11—C12—C13 | −0.8 (3) | C1—N1—S1—C9 | 72.62 (14) |
C11—C12—C13—C14 | −0.2 (3) | C10—C9—S1—O1 | −158.84 (12) |
C12—C13—C14—C9 | 1.2 (3) | C14—C9—S1—O1 | 19.01 (15) |
C10—C9—C14—C13 | −1.2 (2) | C10—C9—S1—O2 | −25.28 (15) |
S1—C9—C14—C13 | −178.99 (13) | C14—C9—S1—O2 | 152.57 (13) |
C7—C8—C15—P1 | 88.3 (2) | C10—C9—S1—N1 | 88.79 (14) |
N1—C8—C15—P1 | −85.35 (18) | C14—C9—S1—N1 | −93.36 (14) |
C8—C7—C16—N2 | 167 (5) | C17'—O3—C17—C18 | 3.9 (6) |
C6—C7—C16—N2 | −13 (5) | P1—O3—C17—C18 | 122.6 (4) |
C7—C8—N1—C1 | 0.74 (17) | C17—O3—C17'—C18' | −25.5 (9) |
C15—C8—N1—C1 | 175.38 (14) | P1—O3—C17'—C18' | −139.8 (9) |
C7—C8—N1—S1 | 170.20 (12) | C19'—O4—C19—C20 | −65 (2) |
C15—C8—N1—S1 | −15.2 (2) | P1—O4—C19—C20 | −155.4 (10) |
C2—C1—N1—C8 | −179.97 (17) | C19—O4—C19'—C20' | 58 (2) |
C6—C1—N1—C8 | −0.51 (17) | P1—O4—C19'—C20' | 166.2 (9) |
Cg1 is the centroid of the C9/C10/C11/C12/C13/C14 ring and Cg2 is the centroid of the C1/C2/C3/C4/C5/C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10···O5i | 0.93 | 2.35 | 3.229 (3) | 157 |
C5—H5···Cg1ii | 0.93 | 2.63 | 3.501 (3) | 157 |
C18—H18A···Cg2iii | 0.96 | 2.99 | 3.874 (8) | 154 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y, −z+2; (iii) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C20H21N2O5PS |
Mr | 432.42 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 9.198 (5), 11.229 (5), 11.992 (5) |
α, β, γ (°) | 65.569 (5), 72.950 (5), 72.204 (5) |
V (Å3) | 1053.7 (9) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.23 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART APEXII area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19331, 5172, 4201 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.665 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.126, 1.02 |
No. of reflections | 5172 |
No. of parameters | 284 |
No. of restraints | 10 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.33 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 is the centroid of the C9/C10/C11/C12/C13/C14 ring and Cg2 is the centroid of the C1/C2/C3/C4/C5/C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10···O5i | 0.93 | 2.35 | 3.229 (3) | 157 |
C5—H5···Cg1ii | 0.93 | 2.63 | 3.501 (3) | 157 |
C18—H18A···Cg2iii | 0.96 | 2.99 | 3.874 (8) | 154 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y, −z+2; (iii) −x+1, −y, −z+1. |
Acknowledgements
SK and KS thank the Technology Business Incubator (TBI), CAS in Crystallography and Biophysics, University of Madras, Maraimalai Campus, Chennai, and the Department of Science and Technology (DST) for data collection.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The indole ring system is present in many natural products. Indole derivaties are used as bioactive drugs (Stevenson, et al., 2000) and they exhibit anti-allergic, central nervous system depressant and muscle relaxant properties (Ho, et al., 1986). Indoles also have been proved to display high aldose reductase inhibitory activity (Rajeswaran, et al., 1999).
In the title compound (Fig. 1), ethyl moieties of diethyl phosphonate are disordered over two sites with occupancy factors 0.737 (5), 0.263 (5) and 0.529 (11), 0.471 (11). The indole ring is essentially planar with a maximum deviation -0.0083 (18) Å for the atom C6. The deviation of atoms C15 and S1 from the indole mean plane is 0.1041 (22) and -0.2158 (6) Å, respectively. The sulfonyl bound phenyl ring is almost perpendicular to the indole ring system, with a dihedral angle of 82.30 (8)°. The atom P1 has a distorted tetrahedral configuration. The widening of angle O3—P1—O5 [115.78 (10)°] and narrowing of angle O4—P1—C15 [104.97 (9)°] from the ideal tetrahedral value are attributed to the Thrope-Ingold effect (Bassindale, 1984).
In the benzene ring of the indole ring system, the endocyclic angles at C2 and C5 are contracted to 117.49 (17) and 118.56 (17)° respectively, while those at C1, C3 and C4 are expanded to 121.35 (15)°, 121.69 (18) and 120.69 (17)°, respectively. This would appear to be a real effect caused by the fusion of the smaller pyrrole ring to the six-membered benzene ring and the strain is taken up by the angular distortion rather than by bond-length distortions (Allen, 1981; Sethu Sankar et al., 2002).
In the crystal, molecules are linked into centrosymmetric dimers via C–H···O hydrogen bonds resulting in a R22(18) graphset motif (Bernstein et al., 1995). The crystal structure is further stabilized by C–H···π interactions, where Cg(1) is the centroid of C9/C10/C11/C12/13/C14 ring and Cg(2) is the centroid of C1/C2/C3/C4/C5/C6 ring.