organic compounds
N′-[1-(2,4-Dioxo-3,4-dihydro-2H-1-benzopyran-3-ylidene)ethyl]thiophene-2-carbohydrazide
aThe School of Chemistry, The University of Manchester, Manchester M13 9PL, England, bLaboratory of Organic Chemistry, Department of Chemical Engineering, University of Thessaloniki, Thessaloniki 54124, Greece, and cGlaxoSmithKline, 1250 South Collegeville Road, P.O.Box 5089, Collegeville, PA 19426-0989, USA
*Correspondence e-mail: kotali@eng.auth.gr
The title compound, C16H12N2O4S, was obtained by the condensation of 3-acetyl-4-hydroxycoumarin with thien-2-ylcarbonyl hydrazide. The pyran ring adopts a 2,4-dione tautomeric form. The benzopyran ring system is almost coplanar with the thiophene ring [dihedral angle 0.9 (2)°]. The exocyclic C=C double bond has an E geometry. The molecular conformation is stabilized by an intramolecular N—H⋯O hydrogen bond. In the crystal, intermolecular N—H⋯O hydrogen bonds link the molecules into chains along the a axis.
Related literature
For the synthesis, characterization and reactions of N-acyl see: Kotali (2009); Kotali et al., (2010).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2002); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL and PLATON.
Supporting information
10.1107/S1600536811010907/rz2570sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811010907/rz2570Isup2.hkl
Thien-2-ylcarboxylic acid hydrazide (1 mmol) was added to a solution of 3-acetyl-4-hydroxycoumarin (1 mmol) in propan-1-ol (20 ml). The mixture was heated at reflux for 24 h and then cooled to room temperature. The resulting precipitate was collected by filtration and dried to give N'-[1-(2,4-dioxo-2H-1-benzopyran-3(4H)- ylidene)ethyl]-thien-2-ylcarboxylic acid hydrazide as a solid (yield 94%). The compound was recrystallizated from propan-1-ol.
H atoms bonded to C were included in calculated positions using a riding model, with aromatic and methyl C—H distances of 0.95 and 0.98 Å, respectively, and Ueq values 1.2 and 1.5 times those of the parent atoms; the torsion angles of the methyl H atoms were optimized to give the best fit to the electron density. H atoms bonded to N were found in a difference Fourier map and refined isotropically. The N—H distances are 0.92 (4) and 1.00 (4) Å. Atom C6 was refined subject to an ISOR constraint.
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2002); data reduction: SAINT (Bruker, 2002); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C16H12N2O4S | Z = 2 |
Mr = 328.34 | F(000) = 340 |
Triclinic, P1 | Dx = 1.546 Mg m−3 |
Hall symbol: -P 1 | Melting point = 501–501.5 K |
a = 4.8631 (11) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 11.833 (3) Å | Cell parameters from 557 reflections |
c = 13.296 (3) Å | θ = 3.3–24.1° |
α = 107.106 (5)° | µ = 0.25 mm−1 |
β = 100.376 (4)° | T = 100 K |
γ = 97.553 (4)° | Plate, colourless |
V = 705.3 (3) Å3 | 0.55 × 0.15 × 0.08 mm |
Bruker SMART APEX CCD diffractometer | 1403 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.072 |
Graphite monochromator | θmax = 25.0°, θmin = 1.8° |
phi and ω scans | h = −5→5 |
3526 measured reflections | k = −9→14 |
2441 independent reflections | l = −14→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.058 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.116 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.87 | w = 1/[σ2(Fo2) + (0.0273P)2] where P = (Fo2 + 2Fc2)/3 |
2441 reflections | (Δ/σ)max < 0.001 |
217 parameters | Δρmax = 0.33 e Å−3 |
6 restraints | Δρmin = −0.36 e Å−3 |
C16H12N2O4S | γ = 97.553 (4)° |
Mr = 328.34 | V = 705.3 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 4.8631 (11) Å | Mo Kα radiation |
b = 11.833 (3) Å | µ = 0.25 mm−1 |
c = 13.296 (3) Å | T = 100 K |
α = 107.106 (5)° | 0.55 × 0.15 × 0.08 mm |
β = 100.376 (4)° |
Bruker SMART APEX CCD diffractometer | 1403 reflections with I > 2σ(I) |
3526 measured reflections | Rint = 0.072 |
2441 independent reflections |
R[F2 > 2σ(F2)] = 0.058 | 6 restraints |
wR(F2) = 0.116 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.87 | Δρmax = 0.33 e Å−3 |
2441 reflections | Δρmin = −0.36 e Å−3 |
217 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.0444 (2) | 0.21501 (11) | 0.90847 (9) | 0.0263 (3) | |
O1 | −0.1997 (5) | 0.2309 (2) | 0.68338 (19) | 0.0196 (7) | |
O2 | −0.0262 (5) | 0.2667 (2) | 0.1854 (2) | 0.0191 (7) | |
O3 | 0.2600 (5) | 0.1509 (2) | 0.2281 (2) | 0.0199 (7) | |
O4 | −0.2081 (5) | 0.3697 (2) | 0.4843 (2) | 0.0189 (7) | |
N1 | 0.1959 (7) | 0.1917 (3) | 0.6226 (3) | 0.0173 (8) | |
H1N | 0.391 (9) | 0.201 (4) | 0.640 (3) | 0.047 (15)* | |
N2 | 0.0996 (7) | 0.2368 (3) | 0.5397 (3) | 0.0150 (8) | |
H2N | −0.014 (9) | 0.302 (4) | 0.552 (3) | 0.048 (15)* | |
C1 | 0.2359 (8) | 0.1294 (4) | 0.9644 (3) | 0.0252 (11) | |
H1 | 0.2486 | 0.1294 | 1.0365 | 0.030* | |
C2 | 0.3682 (8) | 0.0614 (4) | 0.8950 (3) | 0.0262 (11) | |
H2 | 0.4810 | 0.0070 | 0.9124 | 0.031* | |
C3 | 0.3201 (8) | 0.0801 (4) | 0.7933 (3) | 0.0208 (10) | |
H3 | 0.3987 | 0.0407 | 0.7351 | 0.025* | |
C4 | 0.1463 (8) | 0.1620 (4) | 0.7887 (3) | 0.0147 (10) | |
C5 | 0.0318 (8) | 0.1993 (3) | 0.6974 (3) | 0.0125 (9) | |
C6 | 0.1535 (8) | 0.1983 (4) | 0.4433 (3) | 0.0133 (9) | |
C7 | 0.3201 (8) | 0.1004 (4) | 0.4210 (3) | 0.0193 (10) | |
H7A | 0.5221 | 0.1358 | 0.4335 | 0.029* | |
H7B | 0.2502 | 0.0480 | 0.3456 | 0.029* | |
H7C | 0.2976 | 0.0528 | 0.4692 | 0.029* | |
C8 | 0.0388 (8) | 0.2517 (4) | 0.3664 (3) | 0.0141 (9) | |
C9 | 0.1028 (8) | 0.2193 (4) | 0.2600 (3) | 0.0155 (10) | |
C10 | −0.1924 (8) | 0.3525 (4) | 0.2107 (3) | 0.0176 (10) | |
C11 | −0.2969 (8) | 0.3977 (4) | 0.1301 (3) | 0.0221 (11) | |
H11 | −0.2520 | 0.3710 | 0.0614 | 0.027* | |
C12 | −0.4677 (8) | 0.4821 (4) | 0.1510 (3) | 0.0249 (11) | |
H12 | −0.5401 | 0.5138 | 0.0960 | 0.030* | |
C13 | −0.5364 (8) | 0.5220 (4) | 0.2519 (3) | 0.0211 (10) | |
H13 | −0.6553 | 0.5797 | 0.2656 | 0.025* | |
C14 | −0.4275 (8) | 0.4756 (4) | 0.3307 (3) | 0.0172 (10) | |
H14 | −0.4735 | 0.5015 | 0.3993 | 0.021* | |
C15 | −0.2522 (8) | 0.3918 (4) | 0.3123 (3) | 0.0162 (10) | |
C16 | −0.1403 (8) | 0.3385 (4) | 0.3938 (3) | 0.0153 (10) |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0278 (7) | 0.0360 (8) | 0.0186 (6) | 0.0138 (6) | 0.0112 (5) | 0.0073 (6) |
O1 | 0.0102 (15) | 0.0294 (18) | 0.0222 (16) | 0.0067 (14) | 0.0062 (12) | 0.0104 (14) |
O2 | 0.0190 (16) | 0.0247 (18) | 0.0170 (15) | 0.0095 (14) | 0.0074 (13) | 0.0077 (14) |
O3 | 0.0189 (16) | 0.0226 (18) | 0.0207 (16) | 0.0073 (14) | 0.0109 (13) | 0.0057 (14) |
O4 | 0.0166 (16) | 0.0256 (18) | 0.0149 (15) | 0.0064 (14) | 0.0076 (13) | 0.0041 (14) |
N1 | 0.010 (2) | 0.029 (2) | 0.0117 (18) | 0.0057 (17) | 0.0024 (15) | 0.0042 (17) |
N2 | 0.0129 (19) | 0.019 (2) | 0.0143 (19) | 0.0045 (17) | 0.0017 (15) | 0.0067 (17) |
C1 | 0.021 (2) | 0.040 (3) | 0.014 (2) | 0.005 (2) | 0.0002 (19) | 0.009 (2) |
C2 | 0.020 (2) | 0.036 (3) | 0.026 (3) | 0.010 (2) | 0.004 (2) | 0.013 (2) |
C3 | 0.019 (2) | 0.031 (3) | 0.017 (2) | 0.010 (2) | 0.0077 (19) | 0.010 (2) |
C4 | 0.009 (2) | 0.016 (2) | 0.013 (2) | −0.0028 (19) | 0.0017 (17) | −0.0012 (19) |
C5 | 0.011 (2) | 0.011 (2) | 0.015 (2) | 0.0039 (18) | 0.0056 (17) | 0.0016 (18) |
C6 | 0.0084 (16) | 0.0156 (17) | 0.0147 (16) | −0.0025 (13) | 0.0041 (13) | 0.0043 (14) |
C7 | 0.017 (2) | 0.019 (3) | 0.021 (2) | 0.001 (2) | 0.0044 (19) | 0.006 (2) |
C8 | 0.010 (2) | 0.014 (2) | 0.015 (2) | −0.0001 (18) | 0.0035 (17) | 0.0013 (19) |
C9 | 0.011 (2) | 0.014 (2) | 0.018 (2) | −0.0019 (19) | 0.0017 (18) | 0.003 (2) |
C10 | 0.009 (2) | 0.023 (3) | 0.017 (2) | 0.0013 (19) | 0.0024 (18) | 0.002 (2) |
C11 | 0.026 (3) | 0.027 (3) | 0.013 (2) | 0.005 (2) | 0.0081 (19) | 0.003 (2) |
C12 | 0.021 (3) | 0.026 (3) | 0.024 (3) | 0.004 (2) | −0.002 (2) | 0.008 (2) |
C13 | 0.017 (2) | 0.021 (3) | 0.022 (2) | 0.005 (2) | 0.0017 (19) | 0.003 (2) |
C14 | 0.013 (2) | 0.019 (3) | 0.016 (2) | −0.0003 (19) | 0.0025 (18) | 0.003 (2) |
C15 | 0.010 (2) | 0.016 (2) | 0.018 (2) | −0.0030 (19) | 0.0030 (18) | 0.0004 (19) |
C16 | 0.011 (2) | 0.017 (3) | 0.016 (2) | −0.0026 (19) | 0.0025 (18) | 0.006 (2) |
S1—C1 | 1.699 (4) | C6—C8 | 1.423 (5) |
S1—C4 | 1.718 (4) | C6—C7 | 1.489 (5) |
O1—C5 | 1.232 (4) | C7—H7A | 0.9800 |
O2—C9 | 1.374 (4) | C7—H7B | 0.9800 |
O2—C10 | 1.382 (5) | C7—H7C | 0.9800 |
O3—C9 | 1.223 (4) | C8—C16 | 1.441 (5) |
O4—C16 | 1.268 (4) | C8—C9 | 1.454 (5) |
N1—C5 | 1.373 (5) | C10—C11 | 1.380 (5) |
N1—N2 | 1.395 (4) | C10—C15 | 1.390 (5) |
N1—H1N | 0.92 (4) | C11—C12 | 1.380 (6) |
N2—C6 | 1.315 (5) | C11—H11 | 0.9500 |
N2—H2N | 1.00 (4) | C12—C13 | 1.402 (5) |
C1—C2 | 1.352 (5) | C12—H12 | 0.9500 |
C1—H1 | 0.9500 | C13—C14 | 1.376 (5) |
C2—C3 | 1.417 (5) | C13—H13 | 0.9500 |
C2—H2 | 0.9500 | C14—C15 | 1.387 (5) |
C3—C4 | 1.374 (5) | C14—H14 | 0.9500 |
C3—H3 | 0.9500 | C15—C16 | 1.465 (5) |
C4—C5 | 1.455 (5) | ||
C1—S1—C4 | 91.6 (2) | H7A—C7—H7C | 109.5 |
C9—O2—C10 | 122.5 (3) | H7B—C7—H7C | 109.5 |
C5—N1—N2 | 115.1 (3) | C6—C8—C16 | 120.1 (3) |
C5—N1—H1N | 123 (3) | C6—C8—C9 | 120.1 (4) |
N2—N1—H1N | 113 (3) | C16—C8—C9 | 119.8 (4) |
C6—N2—N1 | 123.0 (4) | O3—C9—O2 | 115.1 (3) |
C6—N2—H2N | 117 (2) | O3—C9—C8 | 126.4 (4) |
N1—N2—H2N | 120 (2) | O2—C9—C8 | 118.5 (4) |
C2—C1—S1 | 112.6 (3) | C11—C10—O2 | 116.8 (4) |
C2—C1—H1 | 123.7 | C11—C10—C15 | 121.3 (4) |
S1—C1—H1 | 123.7 | O2—C10—C15 | 121.9 (4) |
C1—C2—C3 | 112.5 (4) | C12—C11—C10 | 118.9 (4) |
C1—C2—H2 | 123.7 | C12—C11—H11 | 120.5 |
C3—C2—H2 | 123.7 | C10—C11—H11 | 120.5 |
C4—C3—C2 | 112.0 (4) | C11—C12—C13 | 121.2 (4) |
C4—C3—H3 | 124.0 | C11—C12—H12 | 119.4 |
C2—C3—H3 | 124.0 | C13—C12—H12 | 119.4 |
C3—C4—C5 | 128.9 (4) | C14—C13—C12 | 118.4 (4) |
C3—C4—S1 | 111.3 (3) | C14—C13—H13 | 120.8 |
C5—C4—S1 | 119.6 (3) | C12—C13—H13 | 120.8 |
O1—C5—N1 | 121.0 (3) | C13—C14—C15 | 121.5 (4) |
O1—C5—C4 | 124.1 (3) | C13—C14—H14 | 119.2 |
N1—C5—C4 | 114.9 (3) | C15—C14—H14 | 119.2 |
N2—C6—C8 | 116.7 (4) | C14—C15—C10 | 118.6 (4) |
N2—C6—C7 | 118.5 (4) | C14—C15—C16 | 122.5 (4) |
C8—C6—C7 | 124.7 (4) | C10—C15—C16 | 118.8 (4) |
C6—C7—H7A | 109.5 | O4—C16—C8 | 123.1 (4) |
C6—C7—H7B | 109.5 | O4—C16—C15 | 118.6 (4) |
H7A—C7—H7B | 109.5 | C8—C16—C15 | 118.2 (4) |
C6—C7—H7C | 109.5 | ||
C5—N1—N2—C6 | −153.1 (4) | C6—C8—C9—O2 | 175.9 (3) |
C4—S1—C1—C2 | −1.1 (3) | C16—C8—C9—O2 | −4.3 (5) |
S1—C1—C2—C3 | 1.3 (5) | C9—O2—C10—C11 | 176.6 (4) |
C1—C2—C3—C4 | −0.9 (5) | C9—O2—C10—C15 | −3.5 (5) |
C2—C3—C4—C5 | −175.5 (4) | O2—C10—C11—C12 | 179.0 (3) |
C2—C3—C4—S1 | 0.0 (5) | C15—C10—C11—C12 | −1.0 (6) |
C1—S1—C4—C3 | 0.6 (3) | C10—C11—C12—C13 | −0.2 (6) |
C1—S1—C4—C5 | 176.6 (3) | C11—C12—C13—C14 | 0.5 (6) |
N2—N1—C5—O1 | 8.1 (5) | C12—C13—C14—C15 | 0.4 (6) |
N2—N1—C5—C4 | −174.8 (3) | C13—C14—C15—C10 | −1.5 (6) |
C3—C4—C5—O1 | 148.8 (4) | C13—C14—C15—C16 | −178.2 (4) |
S1—C4—C5—O1 | −26.4 (6) | C11—C10—C15—C14 | 1.8 (6) |
C3—C4—C5—N1 | −28.2 (6) | O2—C10—C15—C14 | −178.1 (3) |
S1—C4—C5—N1 | 156.6 (3) | C11—C10—C15—C16 | 178.7 (4) |
N1—N2—C6—C8 | 179.3 (3) | O2—C10—C15—C16 | −1.3 (6) |
N1—N2—C6—C7 | 1.2 (6) | C6—C8—C16—O4 | −1.3 (6) |
N2—C6—C8—C16 | −3.4 (5) | C9—C8—C16—O4 | 178.9 (4) |
C7—C6—C8—C16 | 174.5 (4) | C6—C8—C16—C15 | 179.6 (3) |
N2—C6—C8—C9 | 176.4 (3) | C9—C8—C16—C15 | −0.2 (5) |
C7—C6—C8—C9 | −5.7 (6) | C14—C15—C16—O4 | 0.5 (6) |
C10—O2—C9—O3 | −174.9 (3) | C10—C15—C16—O4 | −176.2 (3) |
C10—O2—C9—C8 | 6.2 (5) | C14—C15—C16—C8 | 179.7 (4) |
C6—C8—C9—O3 | −2.9 (6) | C10—C15—C16—C8 | 3.0 (5) |
C16—C8—C9—O3 | 176.9 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O4 | 1.00 (4) | 1.64 (5) | 2.481 (4) | 140 (4) |
N1—H1N···O1i | 0.92 (4) | 1.93 (4) | 2.841 (4) | 177 (4) |
Symmetry code: (i) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C16H12N2O4S |
Mr | 328.34 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 4.8631 (11), 11.833 (3), 13.296 (3) |
α, β, γ (°) | 107.106 (5), 100.376 (4), 97.553 (4) |
V (Å3) | 705.3 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.25 |
Crystal size (mm) | 0.55 × 0.15 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3526, 2441, 1403 |
Rint | 0.072 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.058, 0.116, 0.87 |
No. of reflections | 2441 |
No. of parameters | 217 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.33, −0.36 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2002), SIR2004 (Burla et al., 2005), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O4 | 1.00 (4) | 1.64 (5) | 2.481 (4) | 140 (4) |
N1—H1N···O1i | 0.92 (4) | 1.93 (4) | 2.841 (4) | 177 (4) |
Symmetry code: (i) x+1, y, z. |
Acknowledgements
The authors thank Royal Society of Chemistry for financial support of this work.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In the context of our ongoing studies on the synthesis, characterization and reactions of N-acyl hydrazones (Kotali, 2009, Kotali et al., 2010), we reacted 3-acetyl-4-hydroxycoumarin (1) with thien-2-ylcarboxylic acid hydrazide (2) anticipating the formation of the hydrazone (3) (Fig. 1). Spectroscopic measurements strongly suggested that the product adopts the tautomeric form (4). The X-ray determination here described confirmed this hypothesis (Figure 2).
The amide nitrogen, surprisingly, is substantially pyramidal with the sum of the angles of the three substituents amounting to 351.1°. The sum of the angles at the other nitrogen atom, which can be viewed as an enamine nitrogen, is 360.0°. This result illustrates the extensive conjugation between this nitrogen and the two carbonyl groups in the pyran ring via the exocyclic double bond. The benzopyran group is essentially coplanar with the thiophene ring, with a dihedral angle of 0.9 (2)°. The exocyclic C═C double bond has E geometry. An intramolecular H bond links N2 and O4 (Table 1), and intermolecular H bonds between N1 and O1 link the molecules into one-dimensional chains along the a axis (Figure 3).