organic compounds
Monoclinic polymorph of 2,5-bis[4-(dimethylamino)styryl]-3,6-dimethylpyrazine
aUniversity Mainz, Duesbergweg 10-14, 55099 Mainz, Germany
*Correspondence e-mail: detert@uni-mainz.de
The title compound, C26H30N4, was prepared by condensation of tetramethylpyrazine and dimethylaminobenzaldehyde and crystallizes from chloroform/methanol in two different forms. Block-shaped crystals belong to the monoclinic and plates to the triclinic system. The two crystal forms differ in the arrangement of the centrosymmetric molecules, which have nearly identical geometries. In the monoclinic crystals reported here, planar molecules [maximum deviation = 0.062 (2) Å], with a transoid arrangement of the (E)-styryl units and completely planarized dimethylamino groups [sum of the C—N bond angles = 359.9 (2)°], form layers connected via H–π-stacking. The dihedral angle between the central and pendant rings is 1.30 (8)°. The triclinic polymorph contains two half molecules, both completed by crystallographic inversion symmetry.
Related literature
The title compound was synthesized as a fundamental chromophore in a larger project focusing on solvatochromic and acidochromic dyes for sensing applications via one and two-photon excited fluorescence, see: Nemkovich et al. (2010); Schmitt et al. (2008); Detert & Schmitt (2006); Strehmel et al. (2003). Starting with 2,5-dimethylpyrazine, linear distyrylpyrazines had been prepared by acid-catalyzed condensations with benzaldehyde (Takahashi & Satake, 1952) as well as via Siegrist reaction with the of alkoxybenzaldehydes (Zerban, 1991). Crystal data for the triclinic form have been deposited (CCDC 807782).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2006); cell SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
10.1107/S1600536811006234/si2330sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811006234/si2330Isup2.hkl
The title compound was prepared by adding potassium tert-butylate (1.50 g, 16.1 mmol) to a solution of tetramethylpyrazine (0.90 g, 6.70 mmol) and 4-dimethylaminobenzaldehyde (2.00 g, 13.41 mmol) in anhydrous DMF (25 ml). The mixture was stirred at 273 K under nitrogen until the aldehyde has been consumed (TLC). The mixture was diluted with water (75 ml) and the product extracted with chloroform, the solution dried with Na2SO4 and after evaporation of the solvent, the residue recrystallized from chloroform/methanol (1:1) to yield a mixture of block- and plate-shaped, dark red crystals. Yield: 1.42 g (54%), m.p.=522 K.
Hydrogen atoms attached to carbons were placed at calculated positions with C—H = 0.95 Å (aromatic) or 0.98–0.99 Å (sp3 C-atom). All H atoms were refined in the riding-model approximation with isotropic displacement parameters (set at 1.2–1.5 times of the Ueq of the parent atom).
Data collection: SMART (Bruker, 2006); cell
SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).C26H30N4 | F(000) = 428 |
Mr = 398.54 | Dx = 1.198 Mg m−3 |
Monoclinic, P21/c | Melting point: 522 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 6.0635 (5) Å | Cell parameters from 3217 reflections |
b = 15.5187 (13) Å | θ = 2.6–27° |
c = 12.8009 (12) Å | µ = 0.07 mm−1 |
β = 113.449 (6)° | T = 193 K |
V = 1105.06 (17) Å3 | Block, orange |
Z = 2 | 0.49 × 0.45 × 0.27 mm |
Bruker SMART CCD diffractometer | 1711 reflections with I > 2σ(I) |
Radiation source: sealed Tube | Rint = 0.057 |
Graphite monochromator | θmax = 28.0°, θmin = 2.2° |
CCD scan | h = −7→7 |
13517 measured reflections | k = −20→19 |
2637 independent reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.170 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.093P)2 + 0.1486P] where P = (Fo2 + 2Fc2)/3 |
2637 reflections | (Δ/σ)max = 0.001 |
139 parameters | Δρmax = 0.27 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
C26H30N4 | V = 1105.06 (17) Å3 |
Mr = 398.54 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 6.0635 (5) Å | µ = 0.07 mm−1 |
b = 15.5187 (13) Å | T = 193 K |
c = 12.8009 (12) Å | 0.49 × 0.45 × 0.27 mm |
β = 113.449 (6)° |
Bruker SMART CCD diffractometer | 1711 reflections with I > 2σ(I) |
13517 measured reflections | Rint = 0.057 |
2637 independent reflections |
R[F2 > 2σ(F2)] = 0.056 | 0 restraints |
wR(F2) = 0.170 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.27 e Å−3 |
2637 reflections | Δρmin = −0.22 e Å−3 |
139 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.3645 (2) | 0.52967 (9) | 0.55807 (11) | 0.0361 (4) | |
C2 | 0.3898 (3) | 0.44536 (10) | 0.54641 (13) | 0.0340 (4) | |
C3 | 0.4723 (3) | 0.58565 (10) | 0.51230 (13) | 0.0347 (4) | |
C4 | 0.2626 (3) | 0.38669 (11) | 0.59782 (16) | 0.0437 (5) | |
H4A | 0.3808 | 0.3592 | 0.6661 | 0.066* | |
H4B | 0.1750 | 0.3423 | 0.5424 | 0.066* | |
H4C | 0.1492 | 0.4203 | 0.6185 | 0.066* | |
C5 | 0.4434 (3) | 0.67746 (11) | 0.52817 (15) | 0.0374 (4) | |
H5 | 0.5138 | 0.7174 | 0.4943 | 0.045* | |
C6 | 0.3227 (3) | 0.70847 (11) | 0.58799 (14) | 0.0363 (4) | |
H6 | 0.2543 | 0.6666 | 0.6203 | 0.044* | |
C7 | 0.2832 (3) | 0.79779 (11) | 0.60981 (14) | 0.0347 (4) | |
C8 | 0.1390 (3) | 0.81714 (11) | 0.66978 (16) | 0.0424 (5) | |
H8 | 0.0713 | 0.7710 | 0.6959 | 0.051* | |
C9 | 0.0920 (3) | 0.90040 (11) | 0.69218 (15) | 0.0424 (5) | |
H9 | −0.0074 | 0.9101 | 0.7327 | 0.051* | |
C10 | 0.1880 (3) | 0.97122 (11) | 0.65634 (13) | 0.0352 (4) | |
C11 | 0.3336 (3) | 0.95248 (11) | 0.59606 (14) | 0.0374 (4) | |
H11 | 0.4019 | 0.9985 | 0.5700 | 0.045* | |
C12 | 0.3784 (3) | 0.86880 (11) | 0.57435 (14) | 0.0383 (4) | |
H12 | 0.4776 | 0.8589 | 0.5338 | 0.046* | |
N13 | 0.1460 (3) | 1.05436 (9) | 0.67883 (13) | 0.0443 (4) | |
C14 | −0.0132 (4) | 1.07191 (13) | 0.73601 (18) | 0.0524 (5) | |
H14A | −0.1665 | 1.0421 | 0.6962 | 0.079* | |
H14B | −0.0415 | 1.1341 | 0.7357 | 0.079* | |
H14C | 0.0610 | 1.0513 | 0.8148 | 0.079* | |
C15 | 0.2474 (3) | 1.12637 (12) | 0.64153 (16) | 0.0479 (5) | |
H15A | 0.4228 | 1.1207 | 0.6724 | 0.072* | |
H15B | 0.2044 | 1.1802 | 0.6688 | 0.072* | |
H15C | 0.1838 | 1.1270 | 0.5581 | 0.072* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0347 (8) | 0.0396 (8) | 0.0399 (8) | 0.0014 (6) | 0.0210 (6) | −0.0010 (6) |
C2 | 0.0300 (8) | 0.0397 (9) | 0.0351 (9) | 0.0006 (6) | 0.0161 (7) | −0.0006 (7) |
C3 | 0.0304 (8) | 0.0415 (10) | 0.0342 (9) | 0.0024 (6) | 0.0151 (7) | −0.0013 (7) |
C4 | 0.0462 (10) | 0.0433 (10) | 0.0542 (11) | 0.0003 (8) | 0.0334 (9) | −0.0002 (8) |
C5 | 0.0374 (9) | 0.0388 (9) | 0.0416 (10) | 0.0012 (7) | 0.0215 (8) | −0.0008 (7) |
C6 | 0.0342 (9) | 0.0401 (9) | 0.0378 (9) | −0.0004 (7) | 0.0176 (8) | −0.0006 (7) |
C7 | 0.0340 (9) | 0.0390 (9) | 0.0359 (9) | 0.0022 (6) | 0.0191 (7) | −0.0006 (7) |
C8 | 0.0469 (10) | 0.0433 (10) | 0.0506 (11) | −0.0020 (7) | 0.0338 (9) | 0.0012 (8) |
C9 | 0.0449 (10) | 0.0476 (11) | 0.0493 (11) | 0.0020 (7) | 0.0343 (9) | −0.0006 (8) |
C10 | 0.0337 (9) | 0.0408 (10) | 0.0350 (9) | 0.0029 (7) | 0.0179 (7) | −0.0015 (7) |
C11 | 0.0388 (9) | 0.0398 (9) | 0.0418 (10) | −0.0027 (7) | 0.0249 (8) | −0.0008 (7) |
C12 | 0.0363 (9) | 0.0459 (10) | 0.0424 (10) | 0.0004 (7) | 0.0258 (8) | −0.0024 (8) |
N13 | 0.0517 (9) | 0.0399 (9) | 0.0532 (9) | 0.0051 (6) | 0.0336 (8) | −0.0023 (7) |
C14 | 0.0531 (12) | 0.0521 (11) | 0.0653 (13) | 0.0063 (9) | 0.0376 (11) | −0.0115 (10) |
C15 | 0.0501 (11) | 0.0409 (11) | 0.0577 (12) | −0.0017 (8) | 0.0268 (10) | −0.0050 (8) |
N1—C2 | 1.333 (2) | C8—H8 | 0.9500 |
N1—C3 | 1.353 (2) | C9—C10 | 1.403 (2) |
C2—C3i | 1.413 (2) | C9—H9 | 0.9500 |
C2—C4 | 1.504 (2) | C10—N13 | 1.368 (2) |
C3—C2i | 1.413 (2) | C10—C11 | 1.415 (2) |
C3—C5 | 1.459 (2) | C11—C12 | 1.377 (2) |
C4—H4A | 0.9800 | C11—H11 | 0.9500 |
C4—H4B | 0.9800 | C12—H12 | 0.9500 |
C4—H4C | 0.9800 | N13—C15 | 1.445 (2) |
C5—C6 | 1.341 (2) | N13—C14 | 1.451 (2) |
C5—H5 | 0.9500 | C14—H14A | 0.9800 |
C6—C7 | 1.453 (2) | C14—H14B | 0.9800 |
C6—H6 | 0.9500 | C14—H14C | 0.9800 |
C7—C12 | 1.401 (2) | C15—H15A | 0.9800 |
C7—C8 | 1.406 (2) | C15—H15B | 0.9800 |
C8—C9 | 1.378 (2) | C15—H15C | 0.9800 |
C2—N1—C3 | 119.01 (14) | C8—C9—H9 | 119.4 |
N1—C2—C3i | 120.87 (15) | C10—C9—H9 | 119.4 |
N1—C2—C4 | 116.32 (14) | N13—C10—C9 | 122.27 (15) |
C3i—C2—C4 | 122.81 (15) | N13—C10—C11 | 121.15 (15) |
N1—C3—C2i | 120.12 (15) | C9—C10—C11 | 116.58 (15) |
N1—C3—C5 | 117.47 (14) | C12—C11—C10 | 121.31 (15) |
C2i—C3—C5 | 122.40 (15) | C12—C11—H11 | 119.3 |
C2—C4—H4A | 109.5 | C10—C11—H11 | 119.3 |
C2—C4—H4B | 109.5 | C11—C12—C7 | 122.44 (16) |
H4A—C4—H4B | 109.5 | C11—C12—H12 | 118.8 |
C2—C4—H4C | 109.5 | C7—C12—H12 | 118.8 |
H4A—C4—H4C | 109.5 | C10—N13—C15 | 121.39 (14) |
H4B—C4—H4C | 109.5 | C10—N13—C14 | 120.01 (15) |
C6—C5—C3 | 123.56 (16) | C15—N13—C14 | 118.53 (14) |
C6—C5—H5 | 118.2 | N13—C14—H14A | 109.5 |
C3—C5—H5 | 118.2 | N13—C14—H14B | 109.5 |
C5—C6—C7 | 128.43 (16) | H14A—C14—H14B | 109.5 |
C5—C6—H6 | 115.8 | N13—C14—H14C | 109.5 |
C7—C6—H6 | 115.8 | H14A—C14—H14C | 109.5 |
C12—C7—C8 | 115.78 (15) | H14B—C14—H14C | 109.5 |
C12—C7—C6 | 124.56 (15) | N13—C15—H15A | 109.5 |
C8—C7—C6 | 119.66 (15) | N13—C15—H15B | 109.5 |
C9—C8—C7 | 122.61 (15) | H15A—C15—H15B | 109.5 |
C9—C8—H8 | 118.7 | N13—C15—H15C | 109.5 |
C7—C8—H8 | 118.7 | H15A—C15—H15C | 109.5 |
C8—C9—C10 | 121.28 (15) | H15B—C15—H15C | 109.5 |
C3—N1—C2—C3i | 0.3 (3) | C8—C9—C10—N13 | −179.19 (17) |
C3—N1—C2—C4 | −179.17 (14) | C8—C9—C10—C11 | 0.3 (3) |
C2—N1—C3—C2i | −0.3 (3) | N13—C10—C11—C12 | 179.28 (15) |
C2—N1—C3—C5 | −179.15 (14) | C9—C10—C11—C12 | −0.2 (2) |
N1—C3—C5—C6 | 2.0 (3) | C10—C11—C12—C7 | 0.2 (3) |
C2i—C3—C5—C6 | −176.81 (17) | C8—C7—C12—C11 | −0.3 (3) |
C3—C5—C6—C7 | 179.74 (15) | C6—C7—C12—C11 | 179.28 (15) |
C5—C6—C7—C12 | −3.1 (3) | C9—C10—N13—C15 | 179.76 (16) |
C5—C6—C7—C8 | 176.42 (18) | C11—C10—N13—C15 | 0.3 (3) |
C12—C7—C8—C9 | 0.4 (3) | C9—C10—N13—C14 | −3.5 (3) |
C6—C7—C8—C9 | −179.23 (16) | C11—C10—N13—C14 | 177.07 (16) |
C7—C8—C9—C10 | −0.4 (3) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C26H30N4 |
Mr | 398.54 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 193 |
a, b, c (Å) | 6.0635 (5), 15.5187 (13), 12.8009 (12) |
β (°) | 113.449 (6) |
V (Å3) | 1105.06 (17) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.49 × 0.45 × 0.27 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13517, 2637, 1711 |
Rint | 0.057 |
(sin θ/λ)max (Å−1) | 0.659 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.170, 1.02 |
No. of reflections | 2637 |
No. of parameters | 139 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.27, −0.22 |
Computer programs: SMART (Bruker, 2006), SAINT (Bruker, 2006), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
Acknowledgements
The authors are grateful to the DFG for financial support.
References
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The title compound (Fig1.) is formed via base-catalyzed condensation of p-dimethylaminobenzaldehyde and tetramethylpyrazine. Monoclinic and triclinic crystals are obtained by crystallization from chloroform/methanol.
The monoclinic crystal is built from parallel layers (Fig. 2) with a distance of the mean planes of 3.5 Å indicating a π-π-interaction of neighbouring molecules. Perpendicular to the pyrazine-N are the nitrogen atoms of the dimethylamino groups of molecules in the lower and upper layer. Each molecule is connected to six neighbouring molecules via H-π-interactions with distances H–centroid of the π-system in the range of 2.27 - 2.88 Å. These CH-π-bonds connect pyrazin-methyl groups C4—H with anilines, and dimethylamino groups C14—H with pyrazines and C15—H with aniline rings. The molecules are planar, C14 shows the largest deviation (0.062 (2) A) from the plane defined by all 15 non H-atoms. The bond length C10—N13 of only 1.368 (2) Å is close to the bond lengths in the central heterocycle (N1—C2: 1.333 (2) Å; N1—C3: 1.353 (2) Å) indicating a strong electronic interaction of terminal donors and the central pyrazine acceptor.
The triclinic form contains two independent half-molecules which both are completed by inversion symmetry [1 - x, 1 - y, 1 - z and -x, 1 - y, 1 - z], drawn with different colours in the packing diagram of Fig. 3.
These molecules are arranged in layers with a distance of 3.7 Å and a tilt angle of 4 °. The centroids of the pyrazine rings of layers A and B are collinear but the molecules are twisted about about 60 °. The layers are connected via hydrogen bonds from C14—H (A) to the aniline ring (B). Crystal data are deposited under CCDC 807782.