metal-organic compounds
cis-Bis(2,2′-bipyrimidine-κ2N1,N1′)dibromidomanganese(II) nitromethane monosolvate
aSchool of Applied Chemical Engineering, The Research Institute of Catalysis, Chonnam National University, Gwangju 500-757, Republic of Korea
*Correspondence e-mail: hakwang@chonnam.ac.kr
The 2(C8H6N4)2]·CH3NO2, contains one half of a neutral MnII complex and one half of a nitromethane solvent molecule, the complete molecules being generated by the application of twofold symmetry. In the complex, the MnII ion has a distorted cis-Br2N4 octahedral coordination geometry defined by four N atoms of the two chelating 2,2′-bipyrimidine ligands and two Br− ions. There are intra- and intermolecular C—H⋯Br and C—H⋯N contacts.
of the title compound, [MnBrRelated literature
For the crystal structures of mononuclear 2,2′-bipyrimidine MnII complexes, see: Hong et al. (1996); Smith et al. (2001).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536811010075/tk2729sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811010075/tk2729Isup2.hkl
To a solution of MnBr2.4H2O (0.2867 g, 1.000 mmol) in EtOH (30 ml) was added 2,2'-bipyrimidine (0.1584 g, 1.002 mmol) followed by stirring for 3 h. The precipitate was separated by filtration, washed with EtOH and dried at 323 K to give a yellow powder (0.3441 g). Crystals suitable for X-ray analysis were obtained by slow evaporation from a CH3NO2 solution.
H atoms were positioned geometrically and allowed to ride on their respective parent atoms [C—H = 0.95 Å (CH) or 0.98 Å (CH3), and with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C)]. The H atoms of the methyl group of the nitromethane solvent molecule were modelled as disordered over two sites rotated by 60° from one another, with an occupancy ratio of 0.5:0.5.
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[MnBr2(C8H6N4)2]·CH3NO2 | F(000) = 1164 |
Mr = 592.14 | Dx = 1.856 Mg m−3 |
Orthorhombic, C2221 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: C 2c 2 | Cell parameters from 2401 reflections |
a = 8.3876 (4) Å | θ = 3.0–25.5° |
b = 12.1772 (6) Å | µ = 4.43 mm−1 |
c = 20.7479 (11) Å | T = 200 K |
V = 2119.14 (18) Å3 | Block, yellow |
Z = 4 | 0.17 × 0.10 × 0.07 mm |
Bruker SMART 1000 CCD diffractometer | 2608 independent reflections |
Radiation source: fine-focus sealed tube | 1818 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.069 |
ϕ and ω scans | θmax = 28.3°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −10→11 |
Tmin = 0.825, Tmax = 1.000 | k = −16→15 |
7872 measured reflections | l = −24→27 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.043 | H-atom parameters constrained |
wR(F2) = 0.078 | w = 1/[σ2(Fo2) + (0.010P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max < 0.001 |
2608 reflections | Δρmax = 0.87 e Å−3 |
143 parameters | Δρmin = −0.86 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 1121 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.003 (16) |
[MnBr2(C8H6N4)2]·CH3NO2 | V = 2119.14 (18) Å3 |
Mr = 592.14 | Z = 4 |
Orthorhombic, C2221 | Mo Kα radiation |
a = 8.3876 (4) Å | µ = 4.43 mm−1 |
b = 12.1772 (6) Å | T = 200 K |
c = 20.7479 (11) Å | 0.17 × 0.10 × 0.07 mm |
Bruker SMART 1000 CCD diffractometer | 2608 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 1818 reflections with I > 2σ(I) |
Tmin = 0.825, Tmax = 1.000 | Rint = 0.069 |
7872 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | H-atom parameters constrained |
wR(F2) = 0.078 | Δρmax = 0.87 e Å−3 |
S = 1.02 | Δρmin = −0.86 e Å−3 |
2608 reflections | Absolute structure: Flack (1983), 1121 Friedel pairs |
143 parameters | Absolute structure parameter: −0.003 (16) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Br1 | 0.17577 (6) | 0.51358 (4) | 0.18610 (3) | 0.03361 (16) | |
Mn1 | 0.0000 | 0.37369 (10) | 0.2500 | 0.0262 (3) | |
N1 | 0.1984 (5) | 0.3378 (3) | 0.3230 (2) | 0.0258 (11) | |
N2 | 0.2612 (6) | 0.2496 (4) | 0.4234 (2) | 0.0306 (12) | |
N3 | 0.0862 (5) | 0.2392 (4) | 0.1799 (3) | 0.0261 (10) | |
N4 | 0.0382 (6) | 0.1601 (4) | 0.0767 (2) | 0.0341 (13) | |
C1 | 0.3439 (6) | 0.3827 (4) | 0.3225 (3) | 0.0288 (12) | |
H1 | 0.3728 | 0.4299 | 0.2880 | 0.035* | |
C2 | 0.4533 (6) | 0.3625 (5) | 0.3707 (3) | 0.0323 (15) | |
H2 | 0.5572 | 0.3935 | 0.3694 | 0.039* | |
C3 | 0.4059 (7) | 0.2952 (5) | 0.4210 (3) | 0.0331 (16) | |
H3 | 0.4789 | 0.2809 | 0.4550 | 0.040* | |
C4 | 0.1658 (7) | 0.2722 (4) | 0.3736 (3) | 0.0246 (12) | |
C5 | 0.2306 (6) | 0.1925 (4) | 0.1809 (3) | 0.0324 (14) | |
H5 | 0.2971 | 0.2028 | 0.2175 | 0.039* | |
C6 | 0.2853 (6) | 0.1295 (5) | 0.1300 (3) | 0.0332 (15) | |
H6 | 0.3876 | 0.0960 | 0.1308 | 0.040* | |
C7 | 0.1849 (8) | 0.1177 (5) | 0.0783 (3) | 0.0373 (14) | |
H7 | 0.2214 | 0.0775 | 0.0420 | 0.045* | |
C8 | −0.0027 (7) | 0.2208 (4) | 0.1271 (3) | 0.0255 (12) | |
O1 | −0.0029 (7) | 0.4220 (4) | 0.0230 (2) | 0.0712 (16) | |
N5 | 0.0678 (8) | 0.5000 | 0.0000 | 0.0372 (18) | |
C9 | 0.2426 (8) | 0.5000 | 0.0000 | 0.046 (3) | |
H9A | 0.2815 | 0.4843 | 0.0436 | 0.069* | 0.50 |
H9B | 0.2815 | 0.5721 | −0.0138 | 0.069* | 0.50 |
H9C | 0.2815 | 0.4435 | −0.0297 | 0.069* | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0310 (3) | 0.0361 (3) | 0.0337 (3) | −0.0004 (3) | 0.0036 (3) | 0.0056 (3) |
Mn1 | 0.0250 (6) | 0.0294 (7) | 0.0240 (7) | 0.000 | −0.0007 (6) | 0.000 |
N1 | 0.024 (2) | 0.025 (2) | 0.028 (3) | −0.002 (2) | −0.002 (2) | 0.002 (2) |
N2 | 0.028 (3) | 0.036 (3) | 0.028 (3) | 0.003 (2) | −0.004 (2) | −0.007 (3) |
N3 | 0.023 (2) | 0.030 (2) | 0.025 (3) | −0.0023 (19) | −0.004 (2) | 0.002 (2) |
N4 | 0.031 (3) | 0.038 (3) | 0.034 (3) | 0.004 (2) | 0.005 (2) | 0.000 (3) |
C1 | 0.030 (3) | 0.032 (3) | 0.025 (3) | 0.000 (3) | 0.002 (3) | −0.004 (3) |
C2 | 0.024 (3) | 0.035 (4) | 0.038 (4) | −0.009 (3) | −0.001 (3) | −0.002 (3) |
C3 | 0.030 (4) | 0.041 (4) | 0.028 (4) | 0.004 (3) | −0.007 (3) | −0.005 (3) |
C4 | 0.025 (3) | 0.025 (3) | 0.024 (3) | 0.009 (3) | −0.002 (3) | −0.008 (2) |
C5 | 0.034 (3) | 0.030 (3) | 0.033 (4) | −0.003 (3) | −0.003 (3) | 0.004 (3) |
C6 | 0.027 (3) | 0.031 (3) | 0.042 (4) | 0.011 (3) | 0.006 (3) | 0.004 (3) |
C7 | 0.037 (4) | 0.039 (4) | 0.036 (4) | 0.006 (4) | 0.003 (3) | −0.009 (3) |
C8 | 0.033 (3) | 0.021 (3) | 0.022 (3) | −0.004 (3) | 0.002 (3) | 0.006 (2) |
O1 | 0.070 (3) | 0.066 (4) | 0.077 (4) | −0.027 (3) | 0.007 (3) | 0.002 (3) |
N5 | 0.046 (5) | 0.033 (5) | 0.032 (5) | 0.000 | 0.000 | −0.003 (4) |
C9 | 0.032 (4) | 0.065 (7) | 0.040 (6) | 0.000 | 0.000 | −0.017 (6) |
Mn1—Br1 | 2.6140 (9) | C2—C3 | 1.386 (8) |
Mn1—N1i | 2.292 (5) | C2—H2 | 0.9500 |
Mn1—N1 | 2.292 (5) | C3—H3 | 0.9500 |
Mn1—N3 | 2.306 (5) | C4—C8i | 1.505 (8) |
Mn1—N3i | 2.306 (5) | C5—C6 | 1.385 (8) |
Mn1—Br1i | 2.6140 (9) | C5—H5 | 0.9500 |
N1—C1 | 1.338 (6) | C6—C7 | 1.370 (8) |
N1—C4 | 1.347 (7) | C6—H6 | 0.9500 |
N2—C3 | 1.336 (6) | C7—H7 | 0.9500 |
N2—C4 | 1.336 (7) | C8—C4i | 1.505 (8) |
N3—C5 | 1.338 (6) | O1—N5 | 1.217 (5) |
N3—C8 | 1.344 (7) | N5—O1ii | 1.217 (5) |
N4—C8 | 1.326 (7) | N5—C9 | 1.466 (9) |
N4—C7 | 1.334 (7) | C9—H9A | 0.9800 |
C1—C2 | 1.379 (7) | C9—H9B | 0.9800 |
C1—H1 | 0.9500 | C9—H9C | 0.9800 |
N1i—Mn1—N1 | 158.0 (2) | C3—C2—H2 | 121.3 |
N1i—Mn1—N3 | 71.06 (16) | N2—C3—C2 | 122.3 (6) |
N1—Mn1—N3 | 93.09 (15) | N2—C3—H3 | 118.8 |
N1i—Mn1—N3i | 93.09 (15) | C2—C3—H3 | 118.8 |
N1—Mn1—N3i | 71.06 (16) | N2—C4—N1 | 127.2 (5) |
N3—Mn1—N3i | 89.5 (2) | N2—C4—C8i | 117.8 (5) |
N1i—Mn1—Br1 | 101.45 (11) | N1—C4—C8i | 115.1 (5) |
N1—Mn1—Br1 | 92.87 (11) | N3—C5—C6 | 121.6 (6) |
N3—Mn1—Br1 | 88.07 (11) | N3—C5—H5 | 119.2 |
N3i—Mn1—Br1 | 163.59 (10) | C6—C5—H5 | 119.2 |
N1i—Mn1—Br1i | 92.87 (11) | C7—C6—C5 | 116.8 (5) |
N1—Mn1—Br1i | 101.45 (11) | C7—C6—H6 | 121.6 |
N3—Mn1—Br1i | 163.59 (10) | C5—C6—H6 | 121.6 |
N3i—Mn1—Br1i | 88.07 (11) | N4—C7—C6 | 123.1 (6) |
Br1—Mn1—Br1i | 98.66 (5) | N4—C7—H7 | 118.4 |
C1—N1—C4 | 115.6 (5) | C6—C7—H7 | 118.4 |
C1—N1—Mn1 | 125.4 (4) | N4—C8—N3 | 126.3 (6) |
C4—N1—Mn1 | 118.7 (4) | N4—C8—C4i | 117.4 (5) |
C3—N2—C4 | 115.4 (5) | N3—C8—C4i | 116.2 (5) |
C5—N3—C8 | 116.3 (5) | O1—N5—O1ii | 121.6 (8) |
C5—N3—Mn1 | 125.1 (4) | O1—N5—C9 | 119.2 (4) |
C8—N3—Mn1 | 117.3 (4) | O1ii—N5—C9 | 119.2 (4) |
C8—N4—C7 | 115.7 (5) | N5—C9—H9A | 109.5 |
N1—C1—C2 | 122.0 (5) | N5—C9—H9B | 109.5 |
N1—C1—H1 | 119.0 | H9A—C9—H9B | 109.5 |
C2—C1—H1 | 119.0 | N5—C9—H9C | 109.5 |
C1—C2—C3 | 117.4 (5) | H9A—C9—H9C | 109.5 |
C1—C2—H2 | 121.3 | H9B—C9—H9C | 109.5 |
N1i—Mn1—N1—C1 | 130.5 (4) | Mn1—N1—C1—C2 | 175.5 (4) |
N3—Mn1—N1—C1 | 87.8 (4) | N1—C1—C2—C3 | −1.4 (8) |
N3i—Mn1—N1—C1 | 176.2 (4) | C4—N2—C3—C2 | 0.8 (8) |
Br1—Mn1—N1—C1 | −0.4 (4) | C1—C2—C3—N2 | 0.8 (9) |
Br1i—Mn1—N1—C1 | −99.9 (4) | C3—N2—C4—N1 | −2.1 (8) |
N1i—Mn1—N1—C4 | −54.4 (4) | C3—N2—C4—C8i | 178.5 (5) |
N3—Mn1—N1—C4 | −97.1 (4) | C1—N1—C4—N2 | 1.6 (8) |
N3i—Mn1—N1—C4 | −8.7 (4) | Mn1—N1—C4—N2 | −174.0 (4) |
Br1—Mn1—N1—C4 | 174.7 (4) | C1—N1—C4—C8i | −179.0 (4) |
Br1i—Mn1—N1—C4 | 75.3 (4) | Mn1—N1—C4—C8i | 5.4 (6) |
N1i—Mn1—N3—C5 | 178.2 (5) | C8—N3—C5—C6 | 0.5 (7) |
N1—Mn1—N3—C5 | −17.4 (4) | Mn1—N3—C5—C6 | −166.5 (4) |
N3i—Mn1—N3—C5 | −88.4 (5) | N3—C5—C6—C7 | 0.3 (8) |
Br1—Mn1—N3—C5 | 75.4 (4) | C8—N4—C7—C6 | 3.8 (9) |
Br1i—Mn1—N3—C5 | −169.8 (3) | C5—C6—C7—N4 | −2.6 (9) |
N1i—Mn1—N3—C8 | 11.3 (4) | C7—N4—C8—N3 | −3.0 (9) |
N1—Mn1—N3—C8 | 175.7 (4) | C7—N4—C8—C4i | 178.6 (5) |
N3i—Mn1—N3—C8 | 104.7 (4) | C5—N3—C8—N4 | 0.9 (8) |
Br1—Mn1—N3—C8 | −91.5 (4) | Mn1—N3—C8—N4 | 168.9 (4) |
Br1i—Mn1—N3—C8 | 23.3 (7) | C5—N3—C8—C4i | 179.3 (4) |
C4—N1—C1—C2 | 0.3 (7) | Mn1—N3—C8—C4i | −12.7 (6) |
Symmetry codes: (i) −x, y, −z+1/2; (ii) x, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···Br1 | 0.95 | 2.87 | 3.542 (6) | 129 |
C2—H2···Br1iii | 0.95 | 2.91 | 3.802 (6) | 156 |
C6—H6···Br1iv | 0.95 | 2.86 | 3.752 (5) | 157 |
C9—H9C···N2v | 0.98 | 2.57 | 3.430 (5) | 147 |
Symmetry codes: (iii) −x+1, y, −z+1/2; (iv) x+1/2, y−1/2, z; (v) −x+1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [MnBr2(C8H6N4)2]·CH3NO2 |
Mr | 592.14 |
Crystal system, space group | Orthorhombic, C2221 |
Temperature (K) | 200 |
a, b, c (Å) | 8.3876 (4), 12.1772 (6), 20.7479 (11) |
V (Å3) | 2119.14 (18) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 4.43 |
Crystal size (mm) | 0.17 × 0.10 × 0.07 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.825, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7872, 2608, 1818 |
Rint | 0.069 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.078, 1.02 |
No. of reflections | 2608 |
No. of parameters | 143 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.87, −0.86 |
Absolute structure | Flack (1983), 1121 Friedel pairs |
Absolute structure parameter | −0.003 (16) |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009).
Mn1—Br1 | 2.6140 (9) | Mn1—N3 | 2.306 (5) |
Mn1—N1 | 2.292 (5) | ||
N1i—Mn1—N1 | 158.0 (2) | Br1—Mn1—Br1i | 98.66 (5) |
N3—Mn1—N3i | 89.5 (2) |
Symmetry code: (i) −x, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···Br1 | 0.95 | 2.87 | 3.542 (6) | 129 |
C2—H2···Br1ii | 0.95 | 2.91 | 3.802 (6) | 156 |
C6—H6···Br1iii | 0.95 | 2.86 | 3.752 (5) | 157 |
C9—H9C···N2iv | 0.98 | 2.57 | 3.430 (5) | 147 |
Symmetry codes: (ii) −x+1, y, −z+1/2; (iii) x+1/2, y−1/2, z; (iv) −x+1/2, −y+1/2, z−1/2. |
Acknowledgements
This work was supported by the Priority Research Centers Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (2010–0029626). The author thanks the KBSI, Jeonju Center, for the X-ray data collection.
References
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Mononuclear MnII complexes of 2,2'-bipyrimidine ligand have been investigated previously (Hong et al., 1996; Smith et al., 2001). The asymmetric unit of the title compound, [MnBr2(bpym)2].CH3NO2 (where bpym is 2,2'-bipyrimidine; C8H6N4), contains half of a neutral Mn(II) complex and half of a nitromethane solvent molecule (Fig. 1). The complex is disposed about a twofold rotation axis running in the [010] direction passing through the Mn1 atom with the special position at (0, y, 1/4) (Wyckoff letter b). The solvent molecule is also located on a twofold rotation axis, but the axis is running along the [100] direction passing through the N5 and C9 atoms, which lie on the special positions of (x, 1/2, 0) (Wyckoff letter a). Because of the symmetry of the twofold rotation, the methyl group of the nitromethane molecule was modelled as disordered over two sites.
In the complex, the MnII ion is six-coordinated in a distorted octahedral environment defined by four N atoms of the two chelating 2,2'-bipyrimidine ligands and two Br- anions, Table 1, which define a cis-Br2N4 donor set. The main contributions to the distortion are the tight N—Mn—N chelate angle and the Br—Br repulsion (N1—Mn1—N3a = 71.1 (2) ° and Br1—Mn1—Br1a = 98.66 (5) °; symmetry code a: -x, y, 1/2 - z), which result in non-linear trans axes (<N3—Mn1—Br1a = 163.6 (1) ° and <N1—Mn1—N1a = 158.0 (2) °). The Mn—N bond lengths are almost equivalent (Table 1) and the dihedral angle between the least-squares planes of the two bpym ligands is 73.05 (7) °.
In the crystal structure, the complexes are stacked in columns along the a axis. When viewed down the c axis, the successive complexes are stacked in the opposite direction. In the columns, several inter- and intramolecular π-π interactions between adjacent pyrimidine rings are present. The shortest distance between Cg1 (the centroid of ring N1—C4) and Cg2i (ring N3—C8, symmetry code i: 1/2 - x, 1/2 + y, 1/2 - z) is 4.411 (3) Å, and the dihedral angle between the ring planes is 4.7 (3) °. Moreover, there are intra- and inter-molecular C—H···Br and C—H···N contacts with d(C···Br) = 3.542 (6)–3.802 (6) Å, and d(C···N) = 3.430 (5) Å (Fig. 2, Table 2).