organic compounds
5-Cyclopentyl-3-methylsulfinyl-2-phenyl-1-benzofuran
aDepartment of Chemistry, Dongeui University, San 24 Kaya-dong Busanjin-gu, Busan 614-714, Republic of Korea, and bDepartment of Chemistry, Pukyong National University, 599-1 Daeyeon 3-dong, Nam-gu, Busan 608-737, Republic of Korea
*Correspondence e-mail: uklee@pknu.ac.kr
In the title compound, C20H20O2S, the cyclopentyl ring adopts an with the flap atom connected to the benzofuran residue. The phenyl ring makes a dihedral angle of 32.36 (9)° with the mean plane of the benzofuran fragment. In the crystal, molecules are linked through weak C—H⋯O interactions. In the cyclopentyl ring, two adjacent C atoms are disordered over two sets of sites with site occupancy factors of 0.675 (8) and 0.325 (8).
Related literature
For the biological activity of benzofuran compounds, see: Aslam et al. (2006); Galal et al. (2009); Khan et al. (2005). For natural products with benzofuran rings, see: Akgul & Anil (2003); Soekamto et al. (2003). For structural studies of related 2-aryl-5-cyclohexyl-3-methylsulfinyl-1-benzofuran derivatives, see: Choi et al. (2011a,b).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536811010920/tk2730sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811010920/tk2730Isup2.hkl
77% 3-Chloroperoxybenzoic acid (269 mg, 1.2 mmol) was added in small portions to a stirred solution of 5-cyclopentyl-3-methylsulfanyl-2-phenyl-1-benzofuran (339 mg, 1.1 mmol) in dichloromethane (30 mL) at 273 K. After being stirred at room temperature for 3 h, the mixture was washed with saturated sodium bicarbonate solution and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated at reduced pressure. The residue was purified by
(hexane–ethyl acetate, 2:1 v/v) to afford the title compound as a colorless solid [yield 73%, M.pt. 415–416 K; Rf = 0.61 (hexane–ethyl acetate, 2:1 v/v)]. Single crystals suitable for X-ray diffraction were prepared by slow evaporation of an acetone solution of the title compound held at room temperature.All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å for aryl, 1.00 Å for methine, 0.99 Å for methylene and 0.98 Å for methyl H atoms, respectively. Uiso(H) =1.2Ueq(C) for aryl-, methine- and methylene-H, and 1.5Ueq(C) for methyl-H atoms. Two C atoms of the cyclopentyl ring are disordered over two positions with site occupancy factors, from
of 0.675 (8) (part A) and 0.325 (8) (part B). The distance of equivalent C—C pairs was restrained to 0.001 Å using command DFIX and SADI, and displacement ellipsoids of C9 and C10 set were restrained to 0.01 using commend ISOR.Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C20H20O2S | F(000) = 688 |
Mr = 324.42 | Dx = 1.321 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3689 reflections |
a = 5.9586 (7) Å | θ = 2.5–26.8° |
b = 25.397 (3) Å | µ = 0.21 mm−1 |
c = 10.7804 (12) Å | T = 173 K |
β = 90.038 (2)° | Block, colourless |
V = 1631.4 (3) Å3 | 0.34 × 0.15 × 0.12 mm |
Z = 4 |
Bruker SMART APEXII CCD diffractometer | 3749 independent reflections |
Radiation source: rotating anode | 2998 reflections with I > 2σ(I) |
Graphite multilayer monochromator | Rint = 0.043 |
Detector resolution: 10.0 pixels mm-1 | θmax = 27.6°, θmin = 1.6° |
ϕ and ω scans | h = −7→7 |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | k = −33→32 |
Tmin = 0.934, Tmax = 0.976 | l = −14→13 |
15888 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.055 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.139 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0448P)2 + 1.8445P] where P = (Fo2 + 2Fc2)/3 |
3749 reflections | (Δ/σ)max < 0.001 |
228 parameters | Δρmax = 0.42 e Å−3 |
36 restraints | Δρmin = −0.37 e Å−3 |
C20H20O2S | V = 1631.4 (3) Å3 |
Mr = 324.42 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 5.9586 (7) Å | µ = 0.21 mm−1 |
b = 25.397 (3) Å | T = 173 K |
c = 10.7804 (12) Å | 0.34 × 0.15 × 0.12 mm |
β = 90.038 (2)° |
Bruker SMART APEXII CCD diffractometer | 3749 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2998 reflections with I > 2σ(I) |
Tmin = 0.934, Tmax = 0.976 | Rint = 0.043 |
15888 measured reflections |
R[F2 > 2σ(F2)] = 0.055 | 36 restraints |
wR(F2) = 0.139 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.42 e Å−3 |
3749 reflections | Δρmin = −0.37 e Å−3 |
228 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | −0.00822 (10) | 0.27762 (2) | 0.59148 (5) | 0.03089 (17) | |
O1 | −0.0724 (3) | 0.43153 (6) | 0.54750 (15) | 0.0316 (4) | |
O2 | 0.0353 (4) | 0.26204 (7) | 0.72244 (17) | 0.0452 (5) | |
C1 | 0.0137 (4) | 0.34662 (9) | 0.5858 (2) | 0.0274 (5) | |
C2 | 0.1643 (4) | 0.37906 (9) | 0.6581 (2) | 0.0291 (5) | |
C3 | 0.3432 (4) | 0.37030 (9) | 0.7400 (2) | 0.0348 (5) | |
H3 | 0.3856 | 0.3354 | 0.7616 | 0.042* | |
C4 | 0.4575 (5) | 0.41296 (10) | 0.7891 (3) | 0.0429 (6) | |
C5 | 0.3859 (5) | 0.46426 (10) | 0.7584 (2) | 0.0429 (6) | |
H5 | 0.4628 | 0.4934 | 0.7939 | 0.051* | |
C6 | 0.2092 (4) | 0.47403 (9) | 0.6792 (2) | 0.0364 (6) | |
H6 | 0.1631 | 0.5088 | 0.6592 | 0.044* | |
C7 | 0.1034 (4) | 0.43049 (9) | 0.6309 (2) | 0.0300 (5) | |
C8 | −0.1229 (4) | 0.37977 (9) | 0.5210 (2) | 0.0294 (5) | |
C9A | 0.6772 (5) | 0.40623 (12) | 0.8627 (3) | 0.0267 (9) | 0.675 (8) |
H9A | 0.8081 | 0.4161 | 0.8096 | 0.032* | 0.675 (8) |
C9B | 0.5876 (14) | 0.4037 (2) | 0.9106 (5) | 0.052 (3) | 0.325 (8) |
H9B | 0.4761 | 0.4041 | 0.9799 | 0.063* | 0.325 (8) |
C10A | 0.6756 (8) | 0.44015 (19) | 0.9815 (4) | 0.0447 (13) | 0.675 (8) |
H10A | 0.5346 | 0.4354 | 1.0287 | 0.054* | 0.675 (8) |
H10B | 0.6956 | 0.4779 | 0.9620 | 0.054* | 0.675 (8) |
C10B | 0.7683 (15) | 0.4454 (4) | 0.9408 (8) | 0.054 (3) | 0.325 (8) |
H10C | 0.7012 | 0.4797 | 0.9635 | 0.065* | 0.325 (8) |
H10D | 0.8749 | 0.4502 | 0.8713 | 0.065* | 0.325 (8) |
C11 | 0.8799 (6) | 0.41795 (13) | 1.0536 (4) | 0.0754 (12) | |
H11A | 1.0166 | 0.4387 | 1.0354 | 0.091* | 0.675 (8) |
H11B | 0.8519 | 0.4189 | 1.1441 | 0.091* | 0.675 (8) |
H11C | 1.0272 | 0.4340 | 1.0732 | 0.091* | 0.325 (8) |
H11D | 0.7826 | 0.4198 | 1.1279 | 0.091* | 0.325 (8) |
C12 | 0.9068 (5) | 0.36158 (11) | 1.0090 (3) | 0.0431 (6) | |
H12A | 0.8976 | 0.3367 | 1.0796 | 0.052* | |
H12B | 1.0534 | 0.3568 | 0.9673 | 0.052* | |
C13 | 0.7140 (5) | 0.35212 (10) | 0.9178 (3) | 0.0417 (6) | |
H13A | 0.7567 | 0.3263 | 0.8532 | 0.050* | 0.675 (8) |
H13B | 0.5779 | 0.3394 | 0.9612 | 0.050* | 0.675 (8) |
H13C | 0.7728 | 0.3422 | 0.8352 | 0.050* | 0.325 (8) |
H13D | 0.6146 | 0.3236 | 0.9481 | 0.050* | 0.325 (8) |
C14 | −0.3000 (4) | 0.37178 (9) | 0.4292 (2) | 0.0305 (5) | |
C15 | −0.4765 (4) | 0.40780 (10) | 0.4209 (2) | 0.0356 (5) | |
H15 | −0.4818 | 0.4372 | 0.4752 | 0.043* | |
C16 | −0.6434 (4) | 0.40057 (12) | 0.3334 (3) | 0.0444 (6) | |
H16 | −0.7626 | 0.4253 | 0.3272 | 0.053* | |
C17 | −0.6375 (5) | 0.35756 (13) | 0.2550 (3) | 0.0483 (7) | |
H17 | −0.7534 | 0.3524 | 0.1957 | 0.058* | |
C18 | −0.4623 (5) | 0.32203 (12) | 0.2631 (2) | 0.0448 (6) | |
H18 | −0.4584 | 0.2925 | 0.2091 | 0.054* | |
C19 | −0.2934 (4) | 0.32909 (10) | 0.3487 (2) | 0.0366 (5) | |
H19 | −0.1724 | 0.3048 | 0.3527 | 0.044* | |
C20 | 0.2414 (4) | 0.26247 (10) | 0.5071 (2) | 0.0387 (6) | |
H20A | 0.3681 | 0.2819 | 0.5428 | 0.058* | |
H20B | 0.2221 | 0.2727 | 0.4201 | 0.058* | |
H20C | 0.2710 | 0.2246 | 0.5121 | 0.058* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0364 (3) | 0.0241 (3) | 0.0322 (3) | −0.0045 (2) | −0.0029 (2) | 0.0024 (2) |
O1 | 0.0363 (9) | 0.0261 (8) | 0.0324 (9) | 0.0025 (7) | −0.0072 (7) | 0.0017 (6) |
O2 | 0.0682 (13) | 0.0342 (10) | 0.0330 (10) | −0.0025 (9) | 0.0011 (9) | 0.0087 (8) |
C1 | 0.0324 (12) | 0.0235 (10) | 0.0262 (11) | −0.0018 (8) | −0.0006 (9) | 0.0013 (8) |
C2 | 0.0358 (12) | 0.0264 (11) | 0.0251 (11) | −0.0014 (9) | −0.0013 (9) | 0.0008 (9) |
C3 | 0.0471 (14) | 0.0244 (11) | 0.0328 (12) | 0.0012 (10) | −0.0112 (11) | 0.0026 (9) |
C4 | 0.0603 (17) | 0.0283 (12) | 0.0400 (14) | −0.0025 (11) | −0.0204 (13) | 0.0010 (10) |
C5 | 0.0616 (17) | 0.0264 (12) | 0.0406 (14) | −0.0038 (11) | −0.0191 (13) | −0.0029 (10) |
C6 | 0.0496 (15) | 0.0241 (11) | 0.0354 (13) | 0.0012 (10) | −0.0070 (11) | 0.0015 (10) |
C7 | 0.0363 (12) | 0.0284 (11) | 0.0254 (11) | 0.0013 (9) | −0.0025 (9) | 0.0008 (9) |
C8 | 0.0314 (11) | 0.0295 (12) | 0.0273 (11) | −0.0011 (9) | 0.0011 (9) | 0.0006 (9) |
C9A | 0.0252 (17) | 0.0292 (18) | 0.0258 (18) | −0.0023 (13) | 0.0028 (13) | 0.0030 (13) |
C9B | 0.062 (6) | 0.046 (5) | 0.050 (5) | −0.011 (4) | −0.016 (5) | 0.003 (4) |
C10A | 0.041 (3) | 0.034 (2) | 0.059 (3) | 0.010 (2) | −0.026 (2) | −0.014 (2) |
C10B | 0.030 (5) | 0.045 (5) | 0.087 (7) | 0.002 (4) | −0.002 (5) | −0.018 (5) |
C11 | 0.078 (2) | 0.0490 (19) | 0.100 (3) | 0.0152 (17) | −0.061 (2) | −0.0193 (18) |
C12 | 0.0372 (14) | 0.0417 (15) | 0.0505 (16) | 0.0036 (11) | −0.0111 (12) | 0.0004 (12) |
C13 | 0.0458 (15) | 0.0351 (13) | 0.0442 (15) | 0.0034 (11) | −0.0128 (12) | −0.0053 (11) |
C14 | 0.0296 (11) | 0.0348 (12) | 0.0271 (11) | −0.0022 (9) | −0.0014 (9) | 0.0043 (9) |
C15 | 0.0317 (12) | 0.0386 (13) | 0.0366 (13) | 0.0008 (10) | 0.0009 (10) | 0.0031 (10) |
C16 | 0.0315 (13) | 0.0531 (17) | 0.0485 (16) | 0.0027 (12) | −0.0036 (11) | 0.0111 (13) |
C17 | 0.0366 (14) | 0.067 (2) | 0.0408 (15) | −0.0094 (13) | −0.0133 (12) | 0.0061 (14) |
C18 | 0.0473 (16) | 0.0527 (17) | 0.0343 (14) | −0.0065 (13) | −0.0079 (12) | −0.0051 (12) |
C19 | 0.0366 (13) | 0.0394 (14) | 0.0338 (13) | −0.0003 (10) | −0.0040 (10) | −0.0007 (10) |
C20 | 0.0446 (14) | 0.0322 (13) | 0.0395 (14) | 0.0034 (11) | −0.0004 (11) | −0.0018 (10) |
S1—O2 | 1.4888 (19) | C10B—H10C | 0.9900 |
S1—C1 | 1.758 (2) | C10B—H10D | 0.9900 |
S1—C20 | 1.786 (3) | C11—C12 | 1.519 (4) |
O1—C8 | 1.379 (3) | C11—H11A | 0.9900 |
O1—C7 | 1.380 (3) | C11—H11B | 0.9900 |
C1—C8 | 1.363 (3) | C11—H11C | 0.9900 |
C1—C2 | 1.446 (3) | C11—H11D | 0.9900 |
C2—C7 | 1.387 (3) | C12—C13 | 1.530 (4) |
C2—C3 | 1.402 (3) | C12—H12A | 0.9900 |
C3—C4 | 1.385 (3) | C12—H12B | 0.9900 |
C3—H3 | 0.9500 | C13—H13A | 0.9900 |
C4—C5 | 1.410 (4) | C13—H13B | 0.9900 |
C4—C9B | 1.539 (4) | C13—H13C | 0.9900 |
C4—C9A | 1.540 (4) | C13—H13D | 0.9900 |
C5—C6 | 1.377 (4) | C14—C19 | 1.389 (3) |
C5—H5 | 0.9500 | C14—C15 | 1.397 (3) |
C6—C7 | 1.375 (3) | C15—C16 | 1.382 (4) |
C6—H6 | 0.9500 | C15—H15 | 0.9500 |
C8—C14 | 1.461 (3) | C16—C17 | 1.382 (4) |
C9A—C13 | 1.513 (4) | C16—H16 | 0.9500 |
C9A—C10A | 1.544 (4) | C17—C18 | 1.383 (4) |
C9A—H9A | 1.0000 | C17—H17 | 0.9500 |
C9B—C13 | 1.513 (4) | C18—C19 | 1.377 (4) |
C9B—C10B | 1.543 (4) | C18—H18 | 0.9500 |
C9B—H9B | 1.0000 | C19—H19 | 0.9500 |
C10A—C11 | 1.550 (2) | C20—H20A | 0.9800 |
C10A—H10A | 0.9900 | C20—H20B | 0.9800 |
C10A—H10B | 0.9900 | C20—H20C | 0.9800 |
C10B—C11 | 1.551 (2) | ||
O2—S1—C1 | 106.54 (11) | H11A—C11—H11B | 108.8 |
O2—S1—C20 | 106.33 (12) | C12—C11—H11C | 111.2 |
C1—S1—C20 | 97.78 (11) | C10A—C11—H11C | 130.7 |
C8—O1—C7 | 106.39 (17) | C10B—C11—H11C | 111.2 |
C8—C1—C2 | 107.1 (2) | H11A—C11—H11C | 25.0 |
C8—C1—S1 | 126.08 (18) | H11B—C11—H11C | 86.0 |
C2—C1—S1 | 126.56 (17) | C12—C11—H11D | 111.2 |
C7—C2—C3 | 118.8 (2) | C10A—C11—H11D | 85.9 |
C7—C2—C1 | 105.1 (2) | C10B—C11—H11D | 111.2 |
C3—C2—C1 | 136.1 (2) | H11A—C11—H11D | 128.2 |
C4—C3—C2 | 119.4 (2) | H11B—C11—H11D | 26.2 |
C4—C3—H3 | 120.3 | H11C—C11—H11D | 109.1 |
C2—C3—H3 | 120.3 | C11—C12—C13 | 105.8 (2) |
C3—C4—C5 | 119.0 (2) | C11—C12—H12A | 110.6 |
C3—C4—C9B | 117.0 (3) | C13—C12—H12A | 110.6 |
C5—C4—C9B | 119.5 (3) | C11—C12—H12B | 110.6 |
C3—C4—C9A | 121.9 (2) | C13—C12—H12B | 110.6 |
C5—C4—C9A | 118.7 (2) | H12A—C12—H12B | 108.7 |
C9B—C4—C9A | 28.0 (3) | C9A—C13—C9B | 28.5 (3) |
C6—C5—C4 | 122.9 (2) | C9A—C13—C12 | 102.6 (2) |
C6—C5—H5 | 118.6 | C9B—C13—C12 | 105.7 (3) |
C4—C5—H5 | 118.6 | C9A—C13—H13A | 111.2 |
C7—C6—C5 | 116.1 (2) | C9B—C13—H13A | 131.7 |
C7—C6—H6 | 122.0 | C12—C13—H13A | 111.2 |
C5—C6—H6 | 122.0 | C9A—C13—H13B | 111.2 |
C6—C7—O1 | 125.4 (2) | C9B—C13—H13B | 84.2 |
C6—C7—C2 | 123.9 (2) | C12—C13—H13B | 111.2 |
O1—C7—C2 | 110.7 (2) | H13A—C13—H13B | 109.2 |
C1—C8—O1 | 110.6 (2) | C9A—C13—H13C | 86.0 |
C1—C8—C14 | 133.8 (2) | C9B—C13—H13C | 110.6 |
O1—C8—C14 | 115.5 (2) | C12—C13—H13C | 110.6 |
C13—C9A—C4 | 115.2 (2) | H13A—C13—H13C | 26.7 |
C13—C9A—C10A | 100.5 (3) | H13B—C13—H13C | 129.2 |
C4—C9A—C10A | 111.1 (2) | C9A—C13—H13D | 134.9 |
C13—C9A—H9A | 109.9 | C9B—C13—H13D | 110.6 |
C4—C9A—H9A | 109.9 | C12—C13—H13D | 110.6 |
C10A—C9A—H9A | 109.9 | H13A—C13—H13D | 84.4 |
C13—C9B—C4 | 115.2 (2) | H13B—C13—H13D | 28.0 |
C13—C9B—C10B | 103.6 (6) | H13C—C13—H13D | 108.7 |
C4—C9B—C10B | 115.2 (5) | C19—C14—C15 | 119.5 (2) |
C13—C9B—H9B | 107.5 | C19—C14—C8 | 120.7 (2) |
C4—C9B—H9B | 107.5 | C15—C14—C8 | 119.8 (2) |
C10B—C9B—H9B | 107.5 | C16—C15—C14 | 119.9 (2) |
C9A—C10A—C11 | 102.0 (3) | C16—C15—H15 | 120.1 |
C9A—C10A—H10A | 111.4 | C14—C15—H15 | 120.1 |
C11—C10A—H10A | 111.4 | C17—C16—C15 | 120.3 (3) |
C9A—C10A—H10B | 111.4 | C17—C16—H16 | 119.9 |
C11—C10A—H10B | 111.4 | C15—C16—H16 | 119.9 |
H10A—C10A—H10B | 109.2 | C16—C17—C18 | 119.8 (3) |
C9B—C10B—C11 | 99.0 (3) | C16—C17—H17 | 120.1 |
C9B—C10B—H10C | 112.0 | C18—C17—H17 | 120.1 |
C11—C10B—H10C | 112.0 | C19—C18—C17 | 120.6 (3) |
C9B—C10B—H10D | 112.0 | C19—C18—H18 | 119.7 |
C11—C10B—H10D | 112.0 | C17—C18—H18 | 119.7 |
H10C—C10B—H10D | 109.6 | C18—C19—C14 | 120.0 (2) |
C12—C11—C10A | 105.5 (3) | C18—C19—H19 | 120.0 |
C12—C11—C10B | 102.7 (5) | C14—C19—H19 | 120.0 |
C10A—C11—C10B | 26.8 (3) | S1—C20—H20A | 109.5 |
C12—C11—H11A | 110.6 | S1—C20—H20B | 109.5 |
C10A—C11—H11A | 110.6 | H20A—C20—H20B | 109.5 |
C10B—C11—H11A | 87.6 | S1—C20—H20C | 109.5 |
C12—C11—H11B | 110.6 | H20A—C20—H20C | 109.5 |
C10A—C11—H11B | 110.6 | H20B—C20—H20C | 109.5 |
C10B—C11—H11B | 133.6 | ||
O2—S1—C1—C8 | −139.2 (2) | C5—C4—C9B—C13 | −162.9 (5) |
C20—S1—C1—C8 | 111.2 (2) | C9A—C4—C9B—C13 | −66.5 (3) |
O2—S1—C1—C2 | 34.2 (2) | C3—C4—C9B—C10B | 161.8 (6) |
C20—S1—C1—C2 | −75.4 (2) | C5—C4—C9B—C10B | −42.3 (8) |
C8—C1—C2—C7 | 0.5 (2) | C9A—C4—C9B—C10B | 54.1 (9) |
S1—C1—C2—C7 | −173.96 (17) | C13—C9A—C10A—C11 | 45.1 (4) |
C8—C1—C2—C3 | −178.4 (3) | C4—C9A—C10A—C11 | 167.5 (3) |
S1—C1—C2—C3 | 7.2 (4) | C13—C9B—C10B—C11 | −45.0 (8) |
C7—C2—C3—C4 | −1.5 (4) | C4—C9B—C10B—C11 | −171.7 (5) |
C1—C2—C3—C4 | 177.2 (3) | C9A—C10A—C11—C12 | −26.3 (5) |
C2—C3—C4—C5 | 2.1 (4) | C9A—C10A—C11—C10B | 61.3 (9) |
C2—C3—C4—C9B | 158.0 (4) | C9B—C10B—C11—C12 | 45.7 (7) |
C2—C3—C4—C9A | −170.2 (2) | C9B—C10B—C11—C10A | −53.6 (5) |
C3—C4—C5—C6 | −1.4 (5) | C10A—C11—C12—C13 | −2.3 (4) |
C9B—C4—C5—C6 | −156.7 (5) | C10B—C11—C12—C13 | −29.8 (5) |
C9A—C4—C5—C6 | 171.1 (3) | C4—C9A—C13—C9B | −66.7 (3) |
C4—C5—C6—C7 | 0.2 (4) | C10A—C9A—C13—C9B | 52.8 (5) |
C5—C6—C7—O1 | −178.1 (2) | C4—C9A—C13—C12 | −166.4 (3) |
C5—C6—C7—C2 | 0.3 (4) | C10A—C9A—C13—C12 | −47.0 (3) |
C8—O1—C7—C6 | 178.3 (2) | C4—C9B—C13—C9A | 66.7 (3) |
C8—O1—C7—C2 | −0.3 (2) | C10B—C9B—C13—C9A | −60.1 (7) |
C3—C2—C7—C6 | 0.3 (4) | C4—C9B—C13—C12 | 154.3 (5) |
C1—C2—C7—C6 | −178.8 (2) | C10B—C9B—C13—C12 | 27.5 (6) |
C3—C2—C7—O1 | 179.0 (2) | C11—C12—C13—C9A | 30.8 (3) |
C1—C2—C7—O1 | −0.1 (3) | C11—C12—C13—C9B | 1.6 (5) |
C2—C1—C8—O1 | −0.7 (3) | C1—C8—C14—C19 | −30.9 (4) |
S1—C1—C8—O1 | 173.79 (16) | O1—C8—C14—C19 | 146.6 (2) |
C2—C1—C8—C14 | 176.8 (2) | C1—C8—C14—C15 | 150.1 (3) |
S1—C1—C8—C14 | −8.7 (4) | O1—C8—C14—C15 | −32.5 (3) |
C7—O1—C8—C1 | 0.6 (2) | C19—C14—C15—C16 | 0.4 (4) |
C7—O1—C8—C14 | −177.40 (19) | C8—C14—C15—C16 | 179.5 (2) |
C3—C4—C9A—C13 | −21.6 (4) | C14—C15—C16—C17 | 0.6 (4) |
C5—C4—C9A—C13 | 166.1 (3) | C15—C16—C17—C18 | −0.8 (4) |
C9B—C4—C9A—C13 | 66.6 (3) | C16—C17—C18—C19 | 0.0 (4) |
C3—C4—C9A—C10A | −135.0 (4) | C17—C18—C19—C14 | 1.0 (4) |
C5—C4—C9A—C10A | 52.7 (4) | C15—C14—C19—C18 | −1.2 (4) |
C9B—C4—C9A—C10A | −46.8 (5) | C8—C14—C19—C18 | 179.7 (2) |
C3—C4—C9B—C13 | 41.3 (8) |
D—H···A | D—H | H···A | D···A | D—H···A |
C19—H19···O2i | 0.95 | 2.53 | 3.324 (3) | 142 |
Symmetry code: (i) x, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C20H20O2S |
Mr | 324.42 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 173 |
a, b, c (Å) | 5.9586 (7), 25.397 (3), 10.7804 (12) |
β (°) | 90.038 (2) |
V (Å3) | 1631.4 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.21 |
Crystal size (mm) | 0.34 × 0.15 × 0.12 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.934, 0.976 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15888, 3749, 2998 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.651 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.055, 0.139, 1.06 |
No. of reflections | 3749 |
No. of parameters | 228 |
No. of restraints | 36 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.42, −0.37 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998).
D—H···A | D—H | H···A | D···A | D—H···A |
C19—H19···O2i | 0.95 | 2.53 | 3.324 (3) | 142 |
Symmetry code: (i) x, −y+1/2, z−1/2. |
References
Akgul, Y. Y. & Anil, H. (2003). Phytochemistry, 63, 939–943. Web of Science CrossRef PubMed CAS Google Scholar
Aslam, S. N., Stevenson, P. C., Phythian, S. J., Veitch, N. C. & Hall, D. R. (2006). Tetrahedron, 62, 4214–4226. Web of Science CrossRef CAS Google Scholar
Brandenburg, K. (1998). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2009). APEX2, SADABS and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Choi, H. D., Seo, P. J., Son, B. W. & Lee, U. (2011a). Acta Cryst. E67, o281. Web of Science CSD CrossRef IUCr Journals Google Scholar
Choi, H. D., Seo, P. J., Son, B. W. & Lee, U. (2011b). Acta Cryst. E67, o470. Web of Science CSD CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Galal, S. A., Abd El-All, A. S., Abdallah, M. M. & El-Diwani, H. I. (2009). Bioorg. Med. Chem. Lett. 19, 2420–2428. Web of Science CrossRef PubMed CAS Google Scholar
Khan, M. W., Alam, M. J., Rashid, M. A. & Chowdhury, R. (2005). Bioorg. Med. Chem. 13, 4796–4805. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Soekamto, N. H., Achmad, S. A., Ghisalberti, E. L., Hakim, E. H. & Syah, Y. M. (2003). Phytochemistry, 64, 831–834. Web of Science CrossRef PubMed CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Many compounds having a benzofuran skeleton have attracted much attention due to their pharmacological properties such as antifungal, antimicrobial, antitumor and antiviral activities (Aslam et al., 2006; Galal et al., 2009; Khan et al., 2005). These compounds occur in a wide range of natural products (Akgul & Anil, 2003; Soekamto et al., 2003). As part of our ongoing program investigating the substituent effect on the solid state structures of 2-aryl-5-cyclohexyl-3-methylsulfinyl-1-benzofuran analogues (Choi et al., 2011a, b), we report herein on the crystal structure of the title compound.
In the title molecule (Fig. 1), the benzofuran unit is essentially planar, with a mean deviation of 0.012 (2) Å from the least-squares plane defined by the nine constituent atoms. The cyclopentyl ring is in the envelope form. In the cyclopentyl ring, two C atoms (C9 & C10) are disordered over two positions with site-occupancy factors, from refinement of 0.675 (8) (part A) and 0.325 (8) (part B). The phenyl ring makes a dihedral angle of 32.36 (9)° with the mean plane of the benzofuran ring. The crystal packing is stabilized by a weak intermolecular C—H···O hydrogen bond between a phenyl-H atom and the oxygen of the S═O unit (Table 1; C19—H19···O2i).