organic compounds
Redetermined structure, intermolecular interactions and
of royleanoneaX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
*Correspondence e-mail: hkfun@usm.my
The structure of the title diterpenoid, C20H28O3, {systematic name: (4bS,8aS)-3-hydroxy-2-isopropyl-4b,8,8-trimethyl-4b,5,6,7,8,8a,9,10-octahydrophenanthrene-1,4-dione} is confirmed [Eugster et al. (1993). Private communication (refcode HACGUN). CCDC, Union Road, Cambridge] and its packing is now described. Its was established by against data collected with Cu radiation: the two stereogenic centres both have S configurations. One cyclohexane ring adopts a chair conformation whereas the other cyclohexane ring is in a half-chair conformation and the benzoquinone ring is slightly twisted. An intramolecular O—H⋯O hydrogen bond generates an S(5) ring motif. In the crystal, molecules are linked into chains along [010] by O—H⋯O hydrogen bonds and weak C—H⋯O interactions. The packing also features C⋯O [3.131 (3) Å] short contacts.
Related literature
For the previous determination of the title structure, see: Eugster et al. (1993). For ring conformations, see: Cremer & Pople (1975). For bond-length data, see: Allen et al. (1987). For background to Verbenaceae plants and the bioactivity of see: Bunluepuech & Tewtrakul (2009); Edwards et al. (1962); Kabouche et al. (2007); Suresh et al. (2011); Slamenová et al. (2004); Tezuka et al. (1998). For a related structure, see: Razak et al. (2010). For hydrogen-bond motifs, see: Bernstein et al. (1995). For the stability of the temperature controller used in the data collection, see Cosier & Glazer, (1986).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811011457/hb5812sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811011457/hb5812Isup2.hkl
The air-dried roots of premna obtusifolia (4.5 kg) were extracted with hexane (2 × 20 l) at room temperature. The combined extracts were concentrated under reduced pressure to give a dark yellow extract (40.0 g) which was subjected to quick
(QCC) over silica gel using solvents of increasing polarity from n-hexane to EtOAc to afford 7 fractions (F1-F7). Fraction F2 was further purified by quick using hexane, yielding the title compound (6.1 mg). Yellow blocks were recrystallized from CH2Cl2 by the slow evaporation of the solvent at room temperature after several days, M.p 451-453 K.The hydroxy H atom was located from the difference map and refined isotropically. The remaining H atoms were placed in calculated positions with (C—H) = 0.98 for CH, 0.97 for CH2 and 0.96 Å for CH3 atoms. The Uiso values were constrained to be 1.5Ueq of the
for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups. The highest residual electron density peak is located at 0.74 Å from C10 and the deepest hole is located at 0.72 Å from C2. 699 Friedel pairs were used to determine the absolute configuration.Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The structure of (I), showing 40% probability displacement ellipsoids. The hydrogen bond is shown as a dashed line. | |
Fig. 2. The crystal packing of (I) viewed along the a axis, showing [010] chains. Hydrogen bonds are shown as dashed lines. |
C20H28O3 | F(000) = 344 |
Mr = 316.42 | Dx = 1.267 Mg m−3 |
Monoclinic, P21 | Melting point = 451–453 K |
Hall symbol: P 2yb | Cu Kα radiation, λ = 1.54178 Å |
a = 10.2247 (2) Å | Cell parameters from 2390 reflections |
b = 7.6353 (1) Å | θ = 5.6–72.1° |
c = 10.7292 (2) Å | µ = 0.66 mm−1 |
β = 97.992 (1)° | T = 100 K |
V = 829.48 (2) Å3 | Block, yellow |
Z = 2 | 0.52 × 0.31 × 0.15 mm |
Bruker APEX Duo CCD diffractometer | 2390 independent reflections |
Radiation source: sealed tube | 2375 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
ϕ and ω scans | θmax = 72.1°, θmin = 5.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −12→12 |
Tmin = 0.726, Tmax = 0.909 | k = −9→6 |
5901 measured reflections | l = −13→12 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.036 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.098 | w = 1/[σ2(Fo2) + (0.0639P)2 + 0.2006P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max = 0.001 |
2390 reflections | Δρmax = 0.35 e Å−3 |
217 parameters | Δρmin = −0.20 e Å−3 |
1 restraint | Absolute structure: Flack (1983) 699 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.11 (19) |
C20H28O3 | V = 829.48 (2) Å3 |
Mr = 316.42 | Z = 2 |
Monoclinic, P21 | Cu Kα radiation |
a = 10.2247 (2) Å | µ = 0.66 mm−1 |
b = 7.6353 (1) Å | T = 100 K |
c = 10.7292 (2) Å | 0.52 × 0.31 × 0.15 mm |
β = 97.992 (1)° |
Bruker APEX Duo CCD diffractometer | 2390 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2375 reflections with I > 2σ(I) |
Tmin = 0.726, Tmax = 0.909 | Rint = 0.021 |
5901 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.098 | Δρmax = 0.35 e Å−3 |
S = 1.06 | Δρmin = −0.20 e Å−3 |
2390 reflections | Absolute structure: Flack (1983) 699 Friedel pairs |
217 parameters | Absolute structure parameter: 0.11 (19) |
1 restraint |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.64538 (13) | −0.0889 (2) | 0.48735 (12) | 0.0254 (3) | |
O2 | 0.54777 (12) | −0.05136 (18) | 0.25211 (12) | 0.0219 (3) | |
H1O2 | 0.567 (3) | −0.139 (5) | 0.304 (3) | 0.055 (9)* | |
O3 | 0.59784 (11) | 0.55637 (18) | 0.31995 (11) | 0.0202 (3) | |
C1 | 0.91254 (18) | 0.0149 (3) | 0.61639 (17) | 0.0244 (4) | |
H1A | 0.8633 | −0.0932 | 0.6003 | 0.029* | |
H1B | 0.9513 | 0.0438 | 0.5414 | 0.029* | |
C2 | 1.02342 (19) | −0.0129 (3) | 0.72689 (19) | 0.0293 (4) | |
H2A | 0.9853 | −0.0529 | 0.7997 | 0.035* | |
H2B | 1.0828 | −0.1033 | 0.7048 | 0.035* | |
C3 | 1.10107 (17) | 0.1532 (3) | 0.76032 (17) | 0.0258 (5) | |
H3A | 1.1496 | 0.1824 | 0.6916 | 0.031* | |
H3B | 1.1652 | 0.1310 | 0.8341 | 0.031* | |
C4 | 1.01699 (15) | 0.3115 (3) | 0.78684 (15) | 0.0194 (4) | |
C5 | 0.90137 (15) | 0.3285 (3) | 0.67650 (14) | 0.0181 (4) | |
H5A | 0.9442 | 0.3520 | 0.6020 | 0.022* | |
C6 | 0.80962 (18) | 0.4855 (3) | 0.68588 (18) | 0.0264 (4) | |
H6A | 0.7458 | 0.4577 | 0.7419 | 0.032* | |
H6B | 0.8607 | 0.5859 | 0.7199 | 0.032* | |
C7 | 0.73866 (16) | 0.5283 (3) | 0.55608 (16) | 0.0194 (4) | |
H7A | 0.6623 | 0.6004 | 0.5646 | 0.023* | |
H7B | 0.7972 | 0.5959 | 0.5108 | 0.023* | |
C8 | 0.69435 (15) | 0.3689 (2) | 0.48092 (15) | 0.0155 (4) | |
C9 | 0.72317 (14) | 0.2047 (2) | 0.52206 (14) | 0.0153 (4) | |
C10 | 0.81709 (15) | 0.1624 (2) | 0.64288 (14) | 0.0153 (3) | |
C11 | 0.65384 (15) | 0.0604 (3) | 0.44783 (15) | 0.0174 (4) | |
C12 | 0.58810 (16) | 0.0954 (3) | 0.31623 (15) | 0.0175 (4) | |
C13 | 0.57151 (15) | 0.2572 (3) | 0.26820 (15) | 0.0165 (4) | |
C14 | 0.61740 (15) | 0.4041 (3) | 0.35330 (15) | 0.0156 (3) | |
C15 | 0.51364 (15) | 0.3012 (3) | 0.13372 (14) | 0.0184 (4) | |
H15A | 0.5037 | 0.4287 | 0.1280 | 0.022* | |
C16 | 0.61027 (18) | 0.2461 (3) | 0.04345 (16) | 0.0260 (4) | |
H16A | 0.6936 | 0.3034 | 0.0671 | 0.039* | |
H16B | 0.5750 | 0.2790 | −0.0409 | 0.039* | |
H16C | 0.6226 | 0.1215 | 0.0477 | 0.039* | |
C17 | 0.37759 (17) | 0.2199 (3) | 0.09225 (18) | 0.0262 (4) | |
H17A | 0.3187 | 0.2518 | 0.1508 | 0.039* | |
H17B | 0.3856 | 0.0947 | 0.0900 | 0.039* | |
H17C | 0.3431 | 0.2621 | 0.0099 | 0.039* | |
C18 | 1.10451 (18) | 0.4757 (3) | 0.78830 (19) | 0.0294 (5) | |
H18A | 1.1833 | 0.4592 | 0.8472 | 0.044* | |
H18B | 1.0570 | 0.5755 | 0.8129 | 0.044* | |
H18C | 1.1279 | 0.4948 | 0.7058 | 0.044* | |
C19 | 0.97379 (18) | 0.2988 (3) | 0.91827 (15) | 0.0266 (4) | |
H19A | 1.0493 | 0.3138 | 0.9813 | 0.040* | |
H19B | 0.9350 | 0.1860 | 0.9281 | 0.040* | |
H19C | 0.9101 | 0.3886 | 0.9274 | 0.040* | |
C20 | 0.73179 (17) | 0.1029 (3) | 0.74287 (16) | 0.0265 (4) | |
H20A | 0.6730 | 0.0115 | 0.7087 | 0.040* | |
H20B | 0.6813 | 0.2003 | 0.7666 | 0.040* | |
H20C | 0.7880 | 0.0598 | 0.8155 | 0.040* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0347 (7) | 0.0149 (7) | 0.0236 (6) | −0.0044 (6) | −0.0064 (5) | 0.0030 (5) |
O2 | 0.0283 (6) | 0.0142 (8) | 0.0208 (6) | −0.0021 (5) | −0.0050 (5) | −0.0011 (5) |
O3 | 0.0217 (6) | 0.0152 (7) | 0.0221 (6) | −0.0003 (5) | −0.0024 (4) | 0.0026 (5) |
C1 | 0.0284 (8) | 0.0194 (11) | 0.0228 (8) | 0.0053 (8) | −0.0062 (7) | −0.0049 (7) |
C2 | 0.0307 (9) | 0.0224 (11) | 0.0313 (10) | 0.0092 (9) | −0.0082 (7) | −0.0048 (9) |
C3 | 0.0194 (8) | 0.0331 (13) | 0.0227 (8) | 0.0065 (8) | −0.0046 (6) | −0.0044 (8) |
C4 | 0.0183 (7) | 0.0220 (11) | 0.0169 (7) | −0.0007 (8) | −0.0006 (6) | −0.0001 (7) |
C5 | 0.0189 (7) | 0.0198 (10) | 0.0152 (7) | −0.0025 (7) | 0.0009 (6) | 0.0001 (7) |
C6 | 0.0310 (9) | 0.0199 (10) | 0.0258 (9) | 0.0003 (8) | −0.0055 (7) | −0.0054 (8) |
C7 | 0.0224 (7) | 0.0148 (10) | 0.0207 (8) | −0.0005 (7) | 0.0016 (6) | −0.0011 (7) |
C8 | 0.0143 (7) | 0.0157 (10) | 0.0163 (7) | −0.0009 (6) | 0.0020 (6) | −0.0002 (6) |
C9 | 0.0147 (6) | 0.0167 (10) | 0.0145 (7) | −0.0008 (6) | 0.0020 (5) | −0.0005 (6) |
C10 | 0.0172 (7) | 0.0158 (9) | 0.0124 (7) | −0.0013 (7) | 0.0005 (6) | 0.0006 (6) |
C11 | 0.0177 (7) | 0.0158 (10) | 0.0182 (7) | 0.0007 (7) | 0.0015 (6) | 0.0008 (7) |
C12 | 0.0176 (7) | 0.0167 (11) | 0.0178 (8) | −0.0011 (7) | 0.0016 (6) | −0.0020 (7) |
C13 | 0.0141 (7) | 0.0179 (10) | 0.0170 (8) | 0.0000 (6) | 0.0004 (6) | −0.0003 (7) |
C14 | 0.0132 (6) | 0.0157 (9) | 0.0181 (7) | 0.0007 (6) | 0.0029 (6) | −0.0001 (7) |
C15 | 0.0220 (7) | 0.0160 (10) | 0.0161 (7) | 0.0003 (7) | −0.0016 (6) | 0.0009 (7) |
C16 | 0.0301 (9) | 0.0294 (12) | 0.0181 (8) | 0.0049 (8) | 0.0020 (6) | 0.0026 (7) |
C17 | 0.0224 (8) | 0.0256 (11) | 0.0277 (8) | 0.0000 (8) | −0.0065 (6) | −0.0001 (8) |
C18 | 0.0268 (9) | 0.0307 (12) | 0.0281 (9) | −0.0091 (9) | −0.0056 (7) | 0.0027 (9) |
C19 | 0.0277 (8) | 0.0341 (12) | 0.0167 (8) | −0.0016 (8) | −0.0013 (6) | −0.0050 (8) |
C20 | 0.0225 (8) | 0.0388 (13) | 0.0181 (8) | −0.0087 (8) | 0.0020 (6) | 0.0034 (8) |
O1—C11 | 1.224 (2) | C8—C14 | 1.506 (2) |
O2—C12 | 1.349 (2) | C9—C11 | 1.481 (2) |
O2—H1O2 | 0.88 (4) | C9—C10 | 1.536 (2) |
O3—C14 | 1.225 (2) | C10—C20 | 1.542 (2) |
C1—C2 | 1.537 (2) | C11—C12 | 1.501 (2) |
C1—C10 | 1.542 (2) | C12—C13 | 1.341 (3) |
C1—H1A | 0.9700 | C13—C14 | 1.481 (3) |
C1—H1B | 0.9700 | C13—C15 | 1.519 (2) |
C2—C3 | 1.513 (3) | C15—C17 | 1.532 (2) |
C2—H2A | 0.9700 | C15—C16 | 1.535 (2) |
C2—H2B | 0.9700 | C15—H15A | 0.9800 |
C3—C4 | 1.533 (3) | C16—H16A | 0.9600 |
C3—H3A | 0.9700 | C16—H16B | 0.9600 |
C3—H3B | 0.9700 | C16—H16C | 0.9600 |
C4—C19 | 1.538 (2) | C17—H17A | 0.9600 |
C4—C18 | 1.539 (3) | C17—H17B | 0.9600 |
C4—C5 | 1.558 (2) | C17—H17C | 0.9600 |
C5—C6 | 1.534 (3) | C18—H18A | 0.9600 |
C5—C10 | 1.548 (3) | C18—H18B | 0.9600 |
C5—H5A | 0.9800 | C18—H18C | 0.9600 |
C6—C7 | 1.514 (2) | C19—H19A | 0.9600 |
C6—H6A | 0.9700 | C19—H19B | 0.9600 |
C6—H6B | 0.9700 | C19—H19C | 0.9600 |
C7—C8 | 1.495 (2) | C20—H20A | 0.9600 |
C7—H7A | 0.9700 | C20—H20B | 0.9600 |
C7—H7B | 0.9700 | C20—H20C | 0.9600 |
C8—C9 | 1.348 (3) | ||
C12—O2—H1O2 | 107 (2) | C9—C10—C5 | 106.69 (14) |
C2—C1—C10 | 112.12 (15) | C20—C10—C5 | 115.45 (14) |
C2—C1—H1A | 109.2 | C1—C10—C5 | 107.17 (13) |
C10—C1—H1A | 109.2 | O1—C11—C9 | 123.94 (15) |
C2—C1—H1B | 109.2 | O1—C11—C12 | 116.59 (16) |
C10—C1—H1B | 109.2 | C9—C11—C12 | 119.46 (16) |
H1A—C1—H1B | 107.9 | C13—C12—O2 | 123.80 (15) |
C3—C2—C1 | 111.93 (18) | C13—C12—C11 | 122.80 (16) |
C3—C2—H2A | 109.2 | O2—C12—C11 | 113.40 (16) |
C1—C2—H2A | 109.2 | C12—C13—C14 | 116.67 (14) |
C3—C2—H2B | 109.2 | C12—C13—C15 | 125.48 (17) |
C1—C2—H2B | 109.2 | C14—C13—C15 | 117.82 (16) |
H2A—C2—H2B | 107.9 | O3—C14—C13 | 120.92 (15) |
C2—C3—C4 | 114.57 (15) | O3—C14—C8 | 118.62 (15) |
C2—C3—H3A | 108.6 | C13—C14—C8 | 120.41 (16) |
C4—C3—H3A | 108.6 | C13—C15—C17 | 113.86 (15) |
C2—C3—H3B | 108.6 | C13—C15—C16 | 109.82 (14) |
C4—C3—H3B | 108.6 | C17—C15—C16 | 110.11 (15) |
H3A—C3—H3B | 107.6 | C13—C15—H15A | 107.6 |
C3—C4—C19 | 111.12 (16) | C17—C15—H15A | 107.6 |
C3—C4—C18 | 107.69 (15) | C16—C15—H15A | 107.6 |
C19—C4—C18 | 106.43 (16) | C15—C16—H16A | 109.5 |
C3—C4—C5 | 108.09 (14) | C15—C16—H16B | 109.5 |
C19—C4—C5 | 114.68 (13) | H16A—C16—H16B | 109.5 |
C18—C4—C5 | 108.58 (15) | C15—C16—H16C | 109.5 |
C6—C5—C10 | 109.26 (13) | H16A—C16—H16C | 109.5 |
C6—C5—C4 | 114.94 (15) | H16B—C16—H16C | 109.5 |
C10—C5—C4 | 116.62 (16) | C15—C17—H17A | 109.5 |
C6—C5—H5A | 104.9 | C15—C17—H17B | 109.5 |
C10—C5—H5A | 104.9 | H17A—C17—H17B | 109.5 |
C4—C5—H5A | 104.9 | C15—C17—H17C | 109.5 |
C7—C6—C5 | 109.12 (15) | H17A—C17—H17C | 109.5 |
C7—C6—H6A | 109.9 | H17B—C17—H17C | 109.5 |
C5—C6—H6A | 109.9 | C4—C18—H18A | 109.5 |
C7—C6—H6B | 109.9 | C4—C18—H18B | 109.5 |
C5—C6—H6B | 109.9 | H18A—C18—H18B | 109.5 |
H6A—C6—H6B | 108.3 | C4—C18—H18C | 109.5 |
C8—C7—C6 | 113.02 (17) | H18A—C18—H18C | 109.5 |
C8—C7—H7A | 109.0 | H18B—C18—H18C | 109.5 |
C6—C7—H7A | 109.0 | C4—C19—H19A | 109.5 |
C8—C7—H7B | 109.0 | C4—C19—H19B | 109.5 |
C6—C7—H7B | 109.0 | H19A—C19—H19B | 109.5 |
H7A—C7—H7B | 107.8 | C4—C19—H19C | 109.5 |
C9—C8—C7 | 122.99 (14) | H19A—C19—H19C | 109.5 |
C9—C8—C14 | 121.79 (15) | H19B—C19—H19C | 109.5 |
C7—C8—C14 | 115.20 (15) | C10—C20—H20A | 109.5 |
C8—C9—C11 | 116.69 (14) | C10—C20—H20B | 109.5 |
C8—C9—C10 | 123.65 (15) | H20A—C20—H20B | 109.5 |
C11—C9—C10 | 119.60 (16) | C10—C20—H20C | 109.5 |
C9—C10—C20 | 107.53 (12) | H20A—C20—H20C | 109.5 |
C9—C10—C1 | 109.58 (13) | H20B—C20—H20C | 109.5 |
C20—C10—C1 | 110.27 (16) | ||
C10—C1—C2—C3 | −56.7 (2) | C4—C5—C10—C9 | −172.64 (13) |
C1—C2—C3—C4 | 54.2 (2) | C6—C5—C10—C20 | −64.48 (19) |
C2—C3—C4—C19 | 76.8 (2) | C4—C5—C10—C20 | 67.96 (19) |
C2—C3—C4—C18 | −167.00 (15) | C6—C5—C10—C1 | 172.24 (13) |
C2—C3—C4—C5 | −49.9 (2) | C4—C5—C10—C1 | −55.33 (17) |
C3—C4—C5—C6 | −177.96 (16) | C8—C9—C11—O1 | −162.38 (16) |
C19—C4—C5—C6 | 57.5 (2) | C10—C9—C11—O1 | 14.7 (2) |
C18—C4—C5—C6 | −61.40 (19) | C8—C9—C11—C12 | 17.2 (2) |
C3—C4—C5—C10 | 52.25 (18) | C10—C9—C11—C12 | −165.74 (13) |
C19—C4—C5—C10 | −72.3 (2) | O1—C11—C12—C13 | 169.20 (16) |
C18—C4—C5—C10 | 168.81 (14) | C9—C11—C12—C13 | −10.4 (2) |
C10—C5—C6—C7 | −68.58 (19) | O1—C11—C12—O2 | −10.7 (2) |
C4—C5—C6—C7 | 158.12 (15) | C9—C11—C12—O2 | 169.71 (14) |
C5—C6—C7—C8 | 40.90 (19) | O2—C12—C13—C14 | 177.82 (14) |
C6—C7—C8—C9 | −4.3 (2) | C11—C12—C13—C14 | −2.1 (2) |
C6—C7—C8—C14 | 177.17 (14) | O2—C12—C13—C15 | −4.1 (2) |
C7—C8—C9—C11 | 169.78 (13) | C11—C12—C13—C15 | 176.03 (14) |
C14—C8—C9—C11 | −11.8 (2) | C12—C13—C14—O3 | −174.92 (15) |
C7—C8—C9—C10 | −7.2 (2) | C15—C13—C14—O3 | 6.8 (2) |
C14—C8—C9—C10 | 171.21 (13) | C12—C13—C14—C8 | 7.7 (2) |
C8—C9—C10—C20 | 105.79 (19) | C15—C13—C14—C8 | −170.58 (13) |
C11—C9—C10—C20 | −71.10 (19) | C9—C8—C14—O3 | −177.84 (15) |
C8—C9—C10—C1 | −134.34 (17) | C7—C8—C14—O3 | 0.68 (19) |
C11—C9—C10—C1 | 48.77 (19) | C9—C8—C14—C13 | −0.4 (2) |
C8—C9—C10—C5 | −18.63 (19) | C7—C8—C14—C13 | 178.12 (13) |
C11—C9—C10—C5 | 164.48 (13) | C12—C13—C15—C17 | 54.2 (2) |
C2—C1—C10—C9 | 170.62 (16) | C14—C13—C15—C17 | −127.68 (17) |
C2—C1—C10—C20 | −71.2 (2) | C12—C13—C15—C16 | −69.8 (2) |
C2—C1—C10—C5 | 55.2 (2) | C14—C13—C15—C16 | 108.33 (18) |
C6—C5—C10—C9 | 54.93 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H1O2···O1 | 0.88 (4) | 2.05 (3) | 2.5977 (18) | 119 (3) |
O2—H1O2···O3i | 0.88 (4) | 2.35 (4) | 3.1079 (19) | 145 (3) |
C1—H1A···O1 | 0.97 | 2.38 | 2.993 (2) | 120 |
C7—H7A···O1ii | 0.97 | 2.51 | 3.131 (3) | 122 |
C17—H17B···O2 | 0.96 | 2.49 | 3.071 (2) | 119 |
C20—H20A···O1 | 0.96 | 2.47 | 3.125 (2) | 125 |
Symmetry codes: (i) x, y−1, z; (ii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C20H28O3 |
Mr | 316.42 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 10.2247 (2), 7.6353 (1), 10.7292 (2) |
β (°) | 97.992 (1) |
V (Å3) | 829.48 (2) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 0.66 |
Crystal size (mm) | 0.52 × 0.31 × 0.15 |
Data collection | |
Diffractometer | Bruker APEX Duo CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.726, 0.909 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5901, 2390, 2375 |
Rint | 0.021 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.098, 1.06 |
No. of reflections | 2390 |
No. of parameters | 217 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.35, −0.20 |
Absolute structure | Flack (1983) 699 Friedel pairs |
Absolute structure parameter | 0.11 (19) |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H1O2···O1 | 0.88 (4) | 2.05 (3) | 2.5977 (18) | 119 (3) |
O2—H1O2···O3i | 0.88 (4) | 2.35 (4) | 3.1079 (19) | 145 (3) |
C1—H1A···O1 | 0.97 | 2.38 | 2.993 (2) | 120 |
C7—H7A···O1ii | 0.97 | 2.51 | 3.131 (3) | 122 |
C17—H17B···O2 | 0.96 | 2.49 | 3.071 (2) | 119 |
C20—H20A···O1 | 0.96 | 2.47 | 3.125 (2) | 125 |
Symmetry codes: (i) x, y−1, z; (ii) x, y+1, z. |
Acknowledgements
AWS thanks Universiti Sains Malaysia for the PhD student visiting fellowship. SC thanks the Prince of Songkla University for generous support. The authors thank Universiti Sains Malaysia for the Research University Grant No.1001/PFIZIK/811151.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The extracts of Verbenaceae plants have been found to possess anti-HIV-1 integrase activity (Bunluepuech & Tewtrakul, 2009) and cytotoxicity (Suresh et al., 2011). During the course of our study of chemical constituents and bioactive compounds from Premna obtusifolia (Verbenaceae), the title diterpenoid (I), which is known as royleanone (Edwards et al., 1962; Tezuka et al., 1998) was isolated from the roots of this plant. Compound (I) was reported to show significant biological properties such as antioxidant (Kabouche et al., 2007) and cytotoxic activities (Slame˘nová et al., 2004). The absolute configuration of (I) was determined by making use of the anomalous scattering of Cu Kα X-radiation with the Flack parameter being refined to 0.11 (19). We herein report the crystal structure of (I).
The molecule of (I) has three fused six membered rings (Fig. 1). The two cyclohexane rings are trans fused. One cyclohexane ring (C1–C5/C10) is in a standard chair conformation whereas the other (C5–C10) is in half chair conformation, with the C5 and C6 atoms having the deviation of 0.396 (2) and -0.323 (2) Å, respectively from the plane through C7–C10 atoms and the puckering parameters Q = 0.563 (2) Å, θ = 55.20 (19)° and ϕ = 16.1 (2)° (Cremer & Pople, 1975). The benzoquinone ring (C8–C9/C11–C14/O1/O3) is slightly twisted with the maximum deviations of -0.091 (1) and 0.055 (2) Å for atoms C9 and C13, respectively, and with the puckering parameters Q = 0.1474 (19) Å, θ = 72.9 (7)° and ϕ = 86.8 (8)° (Cremer & Pople, 1975). The O1, O2 and O3 atoms lie close to the mean plane of the C8–C9/C11–C14 ring with the r.m.s. of 0.0870 (1) Å. The bond angles around C8, C9, C12 and C13 are indicative of sp2 hybridization for these atoms. The orientation of the propanyl group is described by the torsion angles C12–C13–C15–C16 = -69.8 (2) and C12–C13–C15–C17 = 54.2 (2) °. Intramolecular O2—H1O2···O1 hydrogen bond (Table 1) generate S(5) ring motif (Fig. 1) (Bernstein et al., 1995). The bond distances and angles in (I) are within normal ranges (Allen et al., 1987) and comparable with a related structure (Razak et al., 2010). The absolute configuration at atoms C1 and C5 or positions 4b and 8a of royleanone are both S, which agrees with the previous stereochemistry of royleanone (Kabouche et al., 2007; Slame˘nová et al., 2004; Tezuka et al., 1998). The S,S configurations are also consistent with those in a related structure (Razak et al., 2010).
In the crystal of (I) (Fig. 2), the molecules are linked into chains along the [0 1 0] through O2—H1O2···O3 hydrogen bond and C7—H7A···O1 weak interaction (Fig. 2 and Table 1). The crystal is stabilized by these interactions together with C···O[3.131 (3) Å] short contacts.