organic compounds
Redetermination of 3,5-dimethylphenol
aNelson Mandela Metropolitan University, Summerstrand Campus, Department of Chemistry, University Way, Summerstrand, PO Box 77000, Port Elizabeth 6031, South Africa
*Correspondence e-mail: richard.betz@webmail.co.za
The previous et al. (1972). C. R. Acad. Sci. Ser. C, 275, 1495] of the title compound, C8H10O, did not report atomic coordinates. There are two molecules in the A and B, which both show approximate non-crystallographic Cs symmetry. The intracyclic C—C—C angles cover the range 118.74 (12)–121.76 (13)°. In the crystal, molecules are linked by O—H⋯O hydrogen bonds, generating [001] C22(4) chains such that molecules A and B alternate. There is no aromatic π–π stacking in the crystal as the shortest centroid–centroid distance is greater than 4.74 Å.
[Gillier-PandraudRelated literature
The compound has been deposited with the CSD (refcode: DMPHNL) but no three-dimensional-coordinates are available (Gillier-Pandraud et al., 1972). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990); Bernstein et al. (1995).
Experimental
Crystal data
|
Data collection
|
Refinement
|
Data collection: APEX2 (Bruker, 2010); cell SAINT (Bruker, 2010); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811013547/hb5838sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811013547/hb5838Isup2.hkl
The compound was obtained commercially (Fluka). Crystals suitable for the X-ray diffraction study were taken directly from the provided compound.
Carbon-bound H-atoms were placed in calculated positions (C—H 0.98 Å for the methyl groups and C—H 0.95 Å for aromatic carbon atoms) and were included in the
in the riding model approximation, with U(H) set to 1.5Ueq(C) for the methyl groups and 1.2Ueq(C) for aromatic carbon atoms. The H atoms of the methyl groups were allowed to rotate with a fixed angle around the C—C bonds to best fit the experimental electron density (HFIX 137 in the SHELX program suite (Sheldrick, 2008)). The H atom of the hydroxyl groups were allowed to rotate with a fixed angle around the O—C bonds to best fit the experimental electron density (HFIX 147 in the SHELX program suite (Sheldrick, 2008)), their U(H) set to 1.5Ueq(O).Data collection: APEX2 (Bruker, 2010); cell
SAINT (Bruker, 2010); data reduction: SAINT (Bruker, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C8H10O | F(000) = 528 |
Mr = 122.16 | Dx = 1.144 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 8727 reflections |
a = 11.9807 (6) Å | θ = 2.3–28.3° |
b = 13.8725 (7) Å | µ = 0.07 mm−1 |
c = 8.5378 (4) Å | T = 200 K |
β = 90.000 (2)° | Block, colourless |
V = 1419.00 (12) Å3 | 0.50 × 0.41 × 0.33 mm |
Z = 8 |
Bruker APEXII CCD diffractometer | 2998 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.031 |
Graphite monochromator | θmax = 28.0°, θmin = 3.3° |
ϕ and ω scans | h = −15→9 |
12884 measured reflections | k = −18→18 |
3392 independent reflections | l = −11→11 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.143 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0724P)2 + 0.556P] where P = (Fo2 + 2Fc2)/3 |
3392 reflections | (Δ/σ)max < 0.001 |
169 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C8H10O | V = 1419.00 (12) Å3 |
Mr = 122.16 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.9807 (6) Å | µ = 0.07 mm−1 |
b = 13.8725 (7) Å | T = 200 K |
c = 8.5378 (4) Å | 0.50 × 0.41 × 0.33 mm |
β = 90.000 (2)° |
Bruker APEXII CCD diffractometer | 2998 reflections with I > 2σ(I) |
12884 measured reflections | Rint = 0.031 |
3392 independent reflections |
R[F2 > 2σ(F2)] = 0.051 | 0 restraints |
wR(F2) = 0.143 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.30 e Å−3 |
3392 reflections | Δρmin = −0.25 e Å−3 |
169 parameters |
x | y | z | Uiso*/Ueq | ||
O1 | 0.16676 (9) | 0.32297 (7) | 0.83341 (11) | 0.0322 (2) | |
H1 | 0.1864 | 0.2833 | 0.7644 | 0.048* | |
C11 | 0.15120 (10) | 0.41221 (9) | 0.76595 (14) | 0.0263 (3) | |
C12 | 0.12708 (11) | 0.48876 (10) | 0.86483 (15) | 0.0294 (3) | |
H12 | 0.1224 | 0.4787 | 0.9747 | 0.035* | |
C13 | 0.10982 (12) | 0.58017 (10) | 0.80279 (17) | 0.0334 (3) | |
C14 | 0.11818 (12) | 0.59291 (10) | 0.64172 (17) | 0.0356 (3) | |
H14 | 0.1070 | 0.6554 | 0.5989 | 0.043* | |
C15 | 0.14249 (11) | 0.51675 (10) | 0.54173 (15) | 0.0320 (3) | |
C16 | 0.15847 (11) | 0.42544 (10) | 0.60545 (14) | 0.0292 (3) | |
H16 | 0.1744 | 0.3723 | 0.5390 | 0.035* | |
C17 | 0.08510 (17) | 0.66459 (12) | 0.9083 (2) | 0.0502 (4) | |
H171 | 0.0653 | 0.6410 | 1.0129 | 0.075* | |
H172 | 0.0227 | 0.7017 | 0.8651 | 0.075* | |
H173 | 0.1512 | 0.7059 | 0.9155 | 0.075* | |
C18 | 0.15133 (14) | 0.53221 (12) | 0.36751 (17) | 0.0419 (4) | |
H181 | 0.0772 | 0.5460 | 0.3246 | 0.063* | |
H182 | 0.1813 | 0.4739 | 0.3181 | 0.063* | |
H183 | 0.2012 | 0.5867 | 0.3465 | 0.063* | |
O2 | 0.24467 (8) | 0.31707 (7) | 0.13407 (11) | 0.0327 (2) | |
H2 | 0.2264 | 0.3213 | 0.0393 | 0.049* | |
C21 | 0.35593 (11) | 0.34152 (8) | 0.15086 (14) | 0.0269 (3) | |
C22 | 0.42454 (12) | 0.35771 (9) | 0.02291 (14) | 0.0293 (3) | |
H22 | 0.3951 | 0.3537 | −0.0802 | 0.035* | |
C23 | 0.53654 (12) | 0.37975 (10) | 0.04558 (15) | 0.0321 (3) | |
C24 | 0.57689 (12) | 0.38687 (10) | 0.19756 (16) | 0.0341 (3) | |
H24 | 0.6532 | 0.4026 | 0.2140 | 0.041* | |
C25 | 0.50780 (12) | 0.37150 (9) | 0.32656 (15) | 0.0318 (3) | |
C26 | 0.39652 (12) | 0.34879 (9) | 0.30206 (14) | 0.0295 (3) | |
H26 | 0.3483 | 0.3383 | 0.3887 | 0.035* | |
C27 | 0.61218 (14) | 0.39382 (12) | −0.09337 (17) | 0.0418 (4) | |
H271 | 0.6191 | 0.3330 | −0.1508 | 0.063* | |
H272 | 0.6861 | 0.4145 | −0.0572 | 0.063* | |
H273 | 0.5807 | 0.4432 | −0.1625 | 0.063* | |
C28 | 0.55365 (15) | 0.37856 (12) | 0.49024 (17) | 0.0434 (4) | |
H281 | 0.4918 | 0.3812 | 0.5652 | 0.065* | |
H282 | 0.5989 | 0.4371 | 0.4998 | 0.065* | |
H283 | 0.6001 | 0.3220 | 0.5123 | 0.065* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0423 (6) | 0.0306 (5) | 0.0236 (4) | 0.0077 (4) | −0.0022 (4) | −0.0006 (3) |
C11 | 0.0237 (6) | 0.0303 (6) | 0.0249 (6) | 0.0020 (5) | −0.0022 (4) | 0.0009 (5) |
C12 | 0.0298 (6) | 0.0339 (6) | 0.0244 (6) | −0.0006 (5) | −0.0002 (5) | −0.0023 (5) |
C13 | 0.0327 (7) | 0.0312 (6) | 0.0362 (7) | −0.0009 (5) | 0.0021 (5) | −0.0036 (5) |
C14 | 0.0360 (7) | 0.0316 (6) | 0.0392 (7) | 0.0001 (5) | 0.0024 (6) | 0.0060 (5) |
C15 | 0.0268 (6) | 0.0412 (7) | 0.0281 (6) | −0.0004 (5) | 0.0006 (5) | 0.0054 (5) |
C16 | 0.0279 (6) | 0.0360 (6) | 0.0238 (6) | 0.0041 (5) | 0.0006 (5) | −0.0016 (5) |
C17 | 0.0630 (11) | 0.0348 (8) | 0.0526 (10) | 0.0025 (7) | 0.0076 (8) | −0.0098 (7) |
C18 | 0.0440 (8) | 0.0520 (9) | 0.0297 (7) | 0.0017 (7) | 0.0027 (6) | 0.0105 (6) |
O2 | 0.0341 (5) | 0.0389 (5) | 0.0252 (4) | −0.0077 (4) | −0.0050 (4) | 0.0058 (4) |
C21 | 0.0318 (7) | 0.0234 (5) | 0.0255 (6) | −0.0033 (5) | −0.0018 (5) | 0.0020 (4) |
C22 | 0.0380 (7) | 0.0294 (6) | 0.0206 (5) | −0.0045 (5) | −0.0022 (5) | 0.0000 (4) |
C23 | 0.0381 (7) | 0.0319 (6) | 0.0261 (6) | −0.0051 (5) | 0.0019 (5) | 0.0000 (5) |
C24 | 0.0326 (7) | 0.0381 (7) | 0.0315 (7) | −0.0070 (6) | −0.0038 (5) | 0.0001 (5) |
C25 | 0.0403 (8) | 0.0305 (6) | 0.0246 (6) | −0.0039 (5) | −0.0050 (5) | 0.0002 (5) |
C26 | 0.0377 (7) | 0.0288 (6) | 0.0220 (6) | −0.0032 (5) | 0.0003 (5) | 0.0020 (4) |
C27 | 0.0408 (8) | 0.0537 (9) | 0.0309 (7) | −0.0084 (7) | 0.0069 (6) | 0.0002 (6) |
C28 | 0.0518 (9) | 0.0508 (9) | 0.0278 (7) | −0.0088 (7) | −0.0122 (6) | −0.0003 (6) |
O1—C11 | 1.3780 (15) | O2—C21 | 1.3828 (16) |
O1—H1 | 0.8400 | O2—H2 | 0.8400 |
C11—C16 | 1.3853 (17) | C21—C26 | 1.3832 (17) |
C11—C12 | 1.3871 (17) | C21—C22 | 1.3855 (18) |
C12—C13 | 1.3897 (19) | C22—C23 | 1.390 (2) |
C12—H12 | 0.9500 | C22—H22 | 0.9500 |
C13—C14 | 1.390 (2) | C23—C24 | 1.3881 (19) |
C13—C17 | 1.507 (2) | C23—C27 | 1.5056 (19) |
C14—C15 | 1.389 (2) | C24—C25 | 1.3942 (19) |
C14—H14 | 0.9500 | C24—H24 | 0.9500 |
C15—C16 | 1.3918 (19) | C25—C26 | 1.386 (2) |
C15—C18 | 1.5066 (18) | C25—C28 | 1.5048 (18) |
C16—H16 | 0.9500 | C26—H26 | 0.9500 |
C17—H171 | 0.9800 | C27—H271 | 0.9800 |
C17—H172 | 0.9800 | C27—H272 | 0.9800 |
C17—H173 | 0.9800 | C27—H273 | 0.9800 |
C18—H181 | 0.9800 | C28—H281 | 0.9800 |
C18—H182 | 0.9800 | C28—H282 | 0.9800 |
C18—H183 | 0.9800 | C28—H283 | 0.9800 |
C11—O1—H1 | 109.5 | C21—O2—H2 | 109.5 |
O1—C11—C16 | 121.60 (11) | O2—C21—C26 | 116.97 (11) |
O1—C11—C12 | 117.49 (11) | O2—C21—C22 | 122.00 (11) |
C16—C11—C12 | 120.90 (12) | C26—C21—C22 | 121.03 (12) |
C11—C12—C13 | 119.84 (12) | C21—C22—C23 | 119.91 (12) |
C11—C12—H12 | 120.1 | C21—C22—H22 | 120.0 |
C13—C12—H12 | 120.1 | C23—C22—H22 | 120.0 |
C12—C13—C14 | 118.84 (12) | C24—C23—C22 | 118.82 (12) |
C12—C13—C17 | 120.70 (13) | C24—C23—C27 | 121.18 (13) |
C14—C13—C17 | 120.45 (13) | C22—C23—C27 | 119.99 (12) |
C15—C14—C13 | 121.76 (13) | C23—C24—C25 | 121.38 (13) |
C15—C14—H14 | 119.1 | C23—C24—H24 | 119.3 |
C13—C14—H14 | 119.1 | C25—C24—H24 | 119.3 |
C14—C15—C16 | 118.74 (12) | C26—C25—C24 | 119.13 (12) |
C14—C15—C18 | 120.88 (13) | C26—C25—C28 | 120.41 (13) |
C16—C15—C18 | 120.38 (13) | C24—C25—C28 | 120.46 (13) |
C11—C16—C15 | 119.91 (12) | C21—C26—C25 | 119.71 (12) |
C11—C16—H16 | 120.0 | C21—C26—H26 | 120.1 |
C15—C16—H16 | 120.0 | C25—C26—H26 | 120.1 |
C13—C17—H171 | 109.5 | C23—C27—H271 | 109.5 |
C13—C17—H172 | 109.5 | C23—C27—H272 | 109.5 |
H171—C17—H172 | 109.5 | H271—C27—H272 | 109.5 |
C13—C17—H173 | 109.5 | C23—C27—H273 | 109.5 |
H171—C17—H173 | 109.5 | H271—C27—H273 | 109.5 |
H172—C17—H173 | 109.5 | H272—C27—H273 | 109.5 |
C15—C18—H181 | 109.5 | C25—C28—H281 | 109.5 |
C15—C18—H182 | 109.5 | C25—C28—H282 | 109.5 |
H181—C18—H182 | 109.5 | H281—C28—H282 | 109.5 |
C15—C18—H183 | 109.5 | C25—C28—H283 | 109.5 |
H181—C18—H183 | 109.5 | H281—C28—H283 | 109.5 |
H182—C18—H183 | 109.5 | H282—C28—H283 | 109.5 |
O1—C11—C12—C13 | −179.53 (12) | O2—C21—C22—C23 | −178.39 (12) |
C16—C11—C12—C13 | 0.0 (2) | C26—C21—C22—C23 | 1.3 (2) |
C11—C12—C13—C14 | −0.6 (2) | C21—C22—C23—C24 | −1.2 (2) |
C11—C12—C13—C17 | −179.15 (14) | C21—C22—C23—C27 | 177.78 (13) |
C12—C13—C14—C15 | 0.4 (2) | C22—C23—C24—C25 | 0.6 (2) |
C17—C13—C14—C15 | 179.05 (14) | C27—C23—C24—C25 | −178.36 (14) |
C13—C14—C15—C16 | 0.2 (2) | C23—C24—C25—C26 | −0.1 (2) |
C13—C14—C15—C18 | −179.91 (14) | C23—C24—C25—C28 | 179.34 (14) |
O1—C11—C16—C15 | −179.85 (12) | O2—C21—C26—C25 | 178.94 (12) |
C12—C11—C16—C15 | 0.6 (2) | C22—C21—C26—C25 | −0.76 (19) |
C14—C15—C16—C11 | −0.7 (2) | C24—C25—C26—C21 | 0.2 (2) |
C18—C15—C16—C11 | 179.39 (13) | C28—C25—C26—C21 | −179.28 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2i | 0.84 | 1.91 | 2.7463 (13) | 171 |
O2—H2···O1ii | 0.84 | 1.90 | 2.7327 (13) | 172 |
Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) x, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | C8H10O |
Mr | 122.16 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 200 |
a, b, c (Å) | 11.9807 (6), 13.8725 (7), 8.5378 (4) |
β (°) | 90, 90.000 (2), 90 |
V (Å3) | 1419.00 (12) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.50 × 0.41 × 0.33 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12884, 3392, 2998 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.661 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.143, 1.04 |
No. of reflections | 3392 |
No. of parameters | 169 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.25 |
Computer programs: APEX2 (Bruker, 2010), SAINT (Bruker, 2010), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2006), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2i | 0.84 | 1.91 | 2.7463 (13) | 171 |
O2—H2···O1ii | 0.84 | 1.90 | 2.7327 (13) | 172 |
Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) x, y, z−1. |
Acknowledgements
The authors thank Mrs Jenny Bell for helpful discussions.
References
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bruker (2010). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Etter, M. C., MacDonald, J. C. & Bernstein, J. (1990). Acta Cryst. B46, 256–262. CrossRef CAS Web of Science IUCr Journals Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Gillier-Pandraud, H., Becker, P., Longchambon, F. & Antona, D. (1972). C. R. Acad. Sci. Ser. C, 275, 1495. Google Scholar
Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Phenol and derivatives are interesting bonding partners for a variety of transition metals and elements from the p-block of the periodic system. They can act as neutral or – upon deprotonation – as anionic monodentate ligands. Upon variation of the substituents on the aromatic system, a seemingly endless series of symmetric as well as asymmetric phenol derivatives featuring different steric pretenses and acidities of the hydroxyl-group are available. At the beginning of a larger study aimed at elucidating the coordination behaviour of various phenol-derivatives in dependence of pH-value and substitution pattern on the phenyl moiety, it seemed of interest to determine the crystal structure of the title compound to enable comparisons with metric parameters in envisioned coordination compounds. Although the structure has been deposited with the Cambridge Structural Database (Gillier-Pandraud et al., 1972), no three-dimensional-coordinates were provided.
The asymmetric unit comprises two molecules of the title compound which are nearly orientated perpendicular to each other. The least-squares planes defined by the C-atoms of the respective phenyl moieties intersect at an angle of 87.87 (4) °. Intracyclic C–C–C angles span a range of 119–122 ° with the biggest angles invariably found on the C-atoms bearing the hydroxyl group and the C-atoms in para-position to these, respectively. The H-atoms of both hydroxyl groups are approximately in plane with the aromatic systems (Fig. 1).
In the crystal structure, a set of cooperative hydrogen bonds connects the molecules to infinite chains along the crystallographic c-axis. Both molecules in the asymmetric unit participate alternately in these chains. In terms of graph-set analysis, the description of these intermolecular interactions necessitates a C22(4) descriptor on the binary level (Fig. 2). The closest distance between two centers of gravity was measured at 4.7437 (8) Å.
The packing of the title compound in the crystal structure is shown in Figure 3.