metal-organic compounds
[N-(3-Methoxy-2-oxidobenzylidene-κO2)threoninato-κ2O1,N](1,10-phenanthroline-κ2N,N′)copper(II) hemihydrate
aCollege of Chemistry and Chemical Engineering, Shanxi Datong University, Datong, Shanxi 037009, People's Republic of China, bSchool of Chemistry and Chemical Engineering, Liaocheng University, Shandong 252059, People's Republic of China, and cDepartment of Materials Science, Shandong Polytechnic Technician College, Shandong 252027, People's Republic of China
*Correspondence e-mail: lilianzhi1963@yahoo.com.cn
In the title complex, [Cu(C12H13NO5)(C12H8N2)]·0.5H2O, the CuII ion is five-coordinated by one N atom and two O atoms from a tridentate Schiff base ligand, derived from the condensation of L-threonine and o-vanillin, and two N atoms from a 1,10-phenanthroline ligand in a distorted square-pyramidal geometry. In the crystal, intermolecular O—H⋯O hydrogen bonds form a one-dimensional left-handed helical structureextending parallel to [001]. The water molecule of crystallization shows half-occupancy.
Related literature
For general background to et al. (1998); Nath et al. (2001); Yamada (1966). For structures of related complexes with five-coordinate copper(II) derived from amino acid Schiff base ligands, see: Huang et al. (2010); Qiu et al. (2008).
and their metal complexes, see: ChohanExperimental
Crystal data
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811012049/hy2419sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811012049/hy2419Isup2.hkl
L-Threonine (1 mmol, 119 mg) and potassium hydroxide (1 mmol, 56 mg) were dissolved in hot methanol (10 ml) and added successively to a methanol solution of o-vanillin (1 mmol, 152 mg). The mixture was then stirred at 323 K for 2 h. Subsequently, an aqueous solution (2 ml) of cupric acetate hydrate (1 mmol, 200 mg) was added dropwise and stirred for 2 h. A methanol solution (5 ml) of phenanthroline (1 mmol, 198 mg) was added dropwise and stirred for 4 h. The solution was held at room temperature for two weeks, whereupon green block-shaped crystals suitable for X-ray diffraction were obtained.
H atoms of the water molecule were found in difference Fourier maps and refined as riding atoms, with O—H = 0.85 Å and with Uiso(H) = 1.5Ueq(O). All other H atoms were placed in geometrically calculated positions and refined as riding atoms, with C—H = 0.93 (aromatic), 0.96 (CH3) and 0.98 (CH) Å and with Uiso(H) = 1.2(1.5 for methyl and hydroxyl)Ueq(C, O).
Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Cu(C12H13NO5)(C12H8N2)]·0.5H2O | Dx = 1.282 Mg m−3 |
Mr = 503.99 | Mo Kα radiation, λ = 0.71073 Å |
Tetragonal, I4 | Cell parameters from 1876 reflections |
Hall symbol: I 4 | θ = 2.2–18.4° |
a = 22.527 (6) Å | µ = 0.87 mm−1 |
c = 10.290 (4) Å | T = 293 K |
V = 5222 (3) Å3 | Block, green |
Z = 8 | 0.50 × 0.15 × 0.11 mm |
F(000) = 2080 |
Bruker SMART 1000 CCD diffractometer | 4560 independent reflections |
Radiation source: fine-focus sealed tube | 2419 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.084 |
ϕ and ω scans | θmax = 25.0°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −26→20 |
Tmin = 0.669, Tmax = 0.910 | k = −26→26 |
13788 measured reflections | l = −12→12 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.076 | H-atom parameters constrained |
wR(F2) = 0.267 | w = 1/[σ2(Fo2) + (0.182P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.90 | (Δ/σ)max < 0.001 |
4560 reflections | Δρmax = 0.83 e Å−3 |
307 parameters | Δρmin = −0.40 e Å−3 |
511 restraints | Absolute structure: Flack (1983), 2126 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.13 (5) |
[Cu(C12H13NO5)(C12H8N2)]·0.5H2O | Z = 8 |
Mr = 503.99 | Mo Kα radiation |
Tetragonal, I4 | µ = 0.87 mm−1 |
a = 22.527 (6) Å | T = 293 K |
c = 10.290 (4) Å | 0.50 × 0.15 × 0.11 mm |
V = 5222 (3) Å3 |
Bruker SMART 1000 CCD diffractometer | 4560 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2419 reflections with I > 2σ(I) |
Tmin = 0.669, Tmax = 0.910 | Rint = 0.084 |
13788 measured reflections |
R[F2 > 2σ(F2)] = 0.076 | H-atom parameters constrained |
wR(F2) = 0.267 | Δρmax = 0.83 e Å−3 |
S = 0.90 | Δρmin = −0.40 e Å−3 |
4560 reflections | Absolute structure: Flack (1983), 2126 Friedel pairs |
307 parameters | Absolute structure parameter: −0.13 (5) |
511 restraints |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cu1 | 0.87663 (4) | 0.35499 (4) | 0.6986 (2) | 0.0480 (4) | |
N1 | 0.9319 (3) | 0.3654 (4) | 0.5559 (8) | 0.0497 (19) | |
N2 | 0.7903 (4) | 0.3312 (4) | 0.5991 (9) | 0.061 (2) | |
N3 | 0.8201 (4) | 0.3524 (4) | 0.8489 (8) | 0.055 (2) | |
O1 | 0.8764 (3) | 0.4423 (3) | 0.7022 (10) | 0.0605 (15) | |
O2 | 0.9201 (4) | 0.5211 (3) | 0.6114 (8) | 0.082 (2) | |
O3 | 0.8996 (3) | 0.3845 (3) | 0.3014 (7) | 0.0669 (19) | |
H3 | 0.9057 | 0.3985 | 0.2291 | 0.100* | |
O4 | 0.8993 (3) | 0.2736 (3) | 0.7261 (7) | 0.061 (2) | |
O5 | 0.9025 (4) | 0.1616 (3) | 0.7772 (10) | 0.089 (3) | |
O6 | 0.0168 (13) | 0.2227 (13) | 0.067 (3) | 0.177 (12) | 0.50 |
H25 | 0.0133 | 0.2266 | −0.0149 | 0.265* | 0.50 |
H26 | 0.0155 | 0.1854 | 0.0797 | 0.265* | 0.50 |
C1 | 0.9087 (5) | 0.4666 (5) | 0.6146 (11) | 0.063 (2) | |
C2 | 0.9336 (5) | 0.4259 (5) | 0.5068 (10) | 0.063 (2) | |
H2 | 0.9739 | 0.4376 | 0.4815 | 0.075* | |
C3 | 0.8892 (5) | 0.4301 (5) | 0.3891 (10) | 0.065 (2) | |
H3A | 0.8493 | 0.4239 | 0.4244 | 0.077* | |
C4 | 0.8898 (6) | 0.4907 (5) | 0.3298 (12) | 0.079 (3) | |
H4A | 0.8622 | 0.4920 | 0.2588 | 0.118* | |
H4B | 0.9290 | 0.4995 | 0.2984 | 0.118* | |
H4C | 0.8786 | 0.5195 | 0.3940 | 0.118* | |
C5 | 0.9646 (5) | 0.3267 (5) | 0.5069 (11) | 0.058 (2) | |
H5 | 0.9904 | 0.3385 | 0.4414 | 0.069* | |
C6 | 0.9653 (4) | 0.2659 (5) | 0.5439 (9) | 0.059 (2) | |
C7 | 0.9331 (5) | 0.2421 (4) | 0.6499 (10) | 0.063 (2) | |
C8 | 0.9367 (5) | 0.1805 (4) | 0.6756 (13) | 0.070 (2) | |
C9 | 0.9703 (5) | 0.1430 (5) | 0.5961 (12) | 0.076 (3) | |
H9 | 0.9695 | 0.1022 | 0.6104 | 0.091* | |
C10 | 1.0053 (5) | 0.1662 (4) | 0.4943 (11) | 0.081 (3) | |
H10 | 1.0306 | 0.1420 | 0.4465 | 0.097* | |
C11 | 1.0007 (4) | 0.2271 (4) | 0.4679 (12) | 0.070 (3) | |
H11 | 1.0216 | 0.2427 | 0.3979 | 0.084* | |
C12 | 0.9017 (6) | 0.1000 (5) | 0.8092 (16) | 0.091 (3) | |
H12A | 0.8767 | 0.0938 | 0.8835 | 0.137* | |
H12B | 0.9413 | 0.0870 | 0.8288 | 0.137* | |
H12C | 0.8866 | 0.0778 | 0.7368 | 0.137* | |
C13 | 0.7756 (5) | 0.3181 (5) | 0.4748 (11) | 0.067 (3) | |
H13 | 0.8050 | 0.3210 | 0.4116 | 0.081* | |
C14 | 0.7194 (4) | 0.3008 (5) | 0.4365 (13) | 0.078 (3) | |
H14 | 0.7113 | 0.2919 | 0.3500 | 0.093* | |
C15 | 0.6757 (5) | 0.2969 (6) | 0.5295 (13) | 0.075 (3) | |
H15 | 0.6369 | 0.2877 | 0.5055 | 0.091* | |
C16 | 0.6892 (4) | 0.3066 (5) | 0.6563 (11) | 0.067 (2) | |
C17 | 0.7462 (4) | 0.3256 (4) | 0.6924 (11) | 0.0588 (18) | |
C18 | 0.7628 (5) | 0.3374 (5) | 0.8214 (8) | 0.061 (2) | |
C19 | 0.7194 (5) | 0.3332 (5) | 0.9200 (8) | 0.070 (2) | |
C20 | 0.7350 (5) | 0.3438 (5) | 1.0495 (10) | 0.074 (3) | |
H20 | 0.7076 | 0.3398 | 1.1166 | 0.089* | |
C21 | 0.7923 (5) | 0.3605 (6) | 1.0725 (11) | 0.079 (3) | |
H21 | 0.8035 | 0.3704 | 1.1567 | 0.095* | |
C22 | 0.8342 (5) | 0.3630 (5) | 0.9741 (10) | 0.068 (3) | |
H22 | 0.8733 | 0.3722 | 0.9951 | 0.082* | |
C23 | 0.6463 (6) | 0.3046 (6) | 0.7582 (11) | 0.081 (3) | |
H23 | 0.6072 | 0.2952 | 0.7375 | 0.097* | |
C24 | 0.6605 (5) | 0.3161 (6) | 0.8868 (11) | 0.081 (3) | |
H24 | 0.6317 | 0.3127 | 0.9512 | 0.098* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0526 (6) | 0.0562 (7) | 0.0354 (5) | −0.0025 (5) | 0.0009 (7) | 0.0008 (7) |
N1 | 0.052 (5) | 0.059 (5) | 0.038 (4) | 0.007 (4) | −0.007 (4) | 0.001 (4) |
N2 | 0.069 (5) | 0.069 (6) | 0.046 (5) | 0.002 (4) | 0.000 (4) | 0.009 (4) |
N3 | 0.060 (5) | 0.063 (5) | 0.041 (5) | −0.003 (4) | 0.002 (3) | 0.006 (4) |
O1 | 0.071 (4) | 0.067 (4) | 0.044 (3) | −0.002 (3) | 0.004 (5) | 0.002 (5) |
O2 | 0.123 (7) | 0.055 (4) | 0.068 (5) | −0.028 (4) | 0.019 (5) | −0.005 (4) |
O3 | 0.093 (5) | 0.071 (5) | 0.036 (4) | −0.008 (4) | −0.004 (4) | 0.000 (3) |
O4 | 0.071 (4) | 0.056 (4) | 0.055 (6) | −0.002 (3) | 0.007 (4) | −0.001 (3) |
O5 | 0.107 (7) | 0.051 (4) | 0.109 (7) | −0.011 (4) | 0.007 (5) | −0.002 (4) |
O6 | 0.155 (13) | 0.187 (14) | 0.188 (15) | −0.014 (9) | 0.013 (9) | −0.002 (9) |
C1 | 0.073 (5) | 0.067 (5) | 0.050 (5) | −0.002 (5) | −0.005 (5) | 0.009 (5) |
C2 | 0.075 (5) | 0.069 (5) | 0.044 (5) | −0.006 (5) | −0.001 (4) | 0.004 (4) |
C3 | 0.075 (5) | 0.077 (5) | 0.042 (5) | −0.004 (5) | −0.001 (4) | 0.010 (5) |
C4 | 0.100 (5) | 0.083 (5) | 0.054 (5) | −0.001 (5) | 0.003 (5) | 0.010 (4) |
C5 | 0.053 (5) | 0.074 (5) | 0.046 (5) | −0.005 (4) | −0.004 (4) | −0.007 (4) |
C6 | 0.053 (5) | 0.066 (5) | 0.059 (5) | 0.004 (4) | −0.010 (4) | −0.006 (4) |
C7 | 0.061 (5) | 0.060 (5) | 0.068 (5) | 0.004 (4) | −0.009 (4) | −0.003 (4) |
C8 | 0.066 (5) | 0.065 (5) | 0.077 (6) | −0.001 (4) | −0.008 (4) | −0.007 (5) |
C9 | 0.079 (5) | 0.062 (5) | 0.086 (6) | 0.012 (4) | −0.002 (5) | −0.011 (5) |
C10 | 0.080 (6) | 0.075 (5) | 0.086 (7) | 0.007 (5) | −0.006 (5) | −0.014 (5) |
C11 | 0.056 (5) | 0.081 (5) | 0.073 (6) | 0.008 (5) | 0.003 (5) | −0.011 (5) |
C12 | 0.099 (5) | 0.072 (5) | 0.102 (6) | 0.001 (5) | −0.002 (5) | 0.003 (5) |
C13 | 0.072 (6) | 0.076 (6) | 0.053 (6) | −0.001 (5) | −0.006 (5) | 0.000 (5) |
C14 | 0.085 (6) | 0.082 (6) | 0.065 (6) | 0.000 (5) | −0.026 (5) | 0.011 (5) |
C15 | 0.072 (6) | 0.081 (6) | 0.073 (6) | −0.017 (5) | −0.021 (5) | 0.005 (5) |
C16 | 0.058 (4) | 0.076 (5) | 0.066 (5) | −0.009 (4) | −0.005 (4) | 0.001 (4) |
C17 | 0.058 (4) | 0.066 (4) | 0.052 (4) | −0.008 (3) | −0.002 (4) | 0.005 (5) |
C18 | 0.066 (4) | 0.070 (5) | 0.048 (4) | −0.007 (4) | 0.004 (4) | 0.010 (4) |
C19 | 0.070 (5) | 0.088 (5) | 0.052 (5) | −0.001 (5) | 0.013 (5) | 0.005 (5) |
C20 | 0.080 (6) | 0.086 (6) | 0.055 (5) | −0.004 (5) | 0.016 (5) | 0.007 (5) |
C21 | 0.092 (6) | 0.096 (6) | 0.049 (6) | 0.003 (6) | 0.002 (5) | 0.004 (5) |
C22 | 0.077 (6) | 0.071 (6) | 0.056 (6) | −0.004 (5) | −0.004 (5) | 0.007 (5) |
C23 | 0.067 (5) | 0.095 (6) | 0.081 (6) | −0.009 (5) | −0.005 (4) | 0.010 (5) |
C24 | 0.073 (5) | 0.098 (6) | 0.073 (6) | −0.006 (5) | 0.019 (5) | 0.012 (5) |
Cu1—N1 | 1.940 (8) | C6—C11 | 1.417 (8) |
Cu1—N2 | 2.263 (9) | C7—C8 | 1.417 (8) |
Cu1—N3 | 2.004 (8) | C8—C9 | 1.397 (16) |
Cu1—O1 | 1.966 (6) | C9—C10 | 1.413 (9) |
Cu1—O4 | 1.924 (7) | C9—H9 | 0.9300 |
N1—C5 | 1.246 (13) | C10—C11 | 1.403 (8) |
N1—C2 | 1.456 (12) | C10—H10 | 0.9300 |
N2—C17 | 1.387 (13) | C11—H11 | 0.9300 |
N2—C13 | 1.354 (14) | C12—H12A | 0.9600 |
N3—C22 | 1.348 (13) | C12—H12B | 0.9600 |
N3—C18 | 1.364 (13) | C12—H12C | 0.9600 |
O1—C1 | 1.282 (13) | C13—C14 | 1.383 (10) |
O2—C1 | 1.255 (12) | C13—H13 | 0.9300 |
O3—C3 | 1.388 (13) | C14—C15 | 1.376 (11) |
O3—H3 | 0.8200 | C14—H14 | 0.9300 |
O4—C7 | 1.302 (12) | C15—C16 | 1.358 (17) |
O5—C8 | 1.367 (15) | C15—H15 | 0.9300 |
O5—C12 | 1.426 (13) | C16—C17 | 1.403 (8) |
O6—H25 | 0.8500 | C16—C23 | 1.427 (16) |
O6—H26 | 0.8501 | C17—C18 | 1.404 (8) |
C1—C2 | 1.544 (15) | C18—C19 | 1.412 (8) |
C2—C3 | 1.573 (14) | C19—C20 | 1.398 (8) |
C2—H2 | 0.9800 | C19—C24 | 1.424 (15) |
C3—C4 | 1.494 (15) | C20—C21 | 1.365 (15) |
C3—H3A | 0.9800 | C20—H20 | 0.9300 |
C4—H4A | 0.9600 | C21—C22 | 1.386 (10) |
C4—H4B | 0.9600 | C21—H21 | 0.9300 |
C4—H4C | 0.9600 | C22—H22 | 0.9300 |
C5—C6 | 1.422 (15) | C23—C24 | 1.386 (9) |
C5—H5 | 0.9300 | C23—H23 | 0.9300 |
C6—C7 | 1.414 (8) | C24—H24 | 0.9300 |
N1—Cu1—O4 | 93.2 (3) | C9—C8—O5 | 124.4 (9) |
N1—Cu1—O1 | 84.0 (3) | C9—C8—C7 | 121.0 (11) |
O4—Cu1—O1 | 161.9 (3) | O5—C8—C7 | 114.5 (10) |
N1—Cu1—N3 | 174.7 (3) | C8—C9—C10 | 120.8 (11) |
O4—Cu1—N3 | 91.6 (3) | C8—C9—H9 | 119.6 |
O1—Cu1—N3 | 90.8 (3) | C10—C9—H9 | 119.6 |
N1—Cu1—N2 | 103.8 (3) | C11—C10—C9 | 117.7 (11) |
O4—Cu1—N2 | 94.0 (3) | C11—C10—H10 | 121.2 |
O1—Cu1—N2 | 104.1 (3) | C9—C10—H10 | 121.2 |
N3—Cu1—N2 | 78.2 (4) | C10—C11—C6 | 122.5 (10) |
C5—N1—C2 | 119.9 (9) | C10—C11—H11 | 118.8 |
C5—N1—Cu1 | 126.9 (8) | C6—C11—H11 | 118.8 |
C2—N1—Cu1 | 113.1 (6) | O5—C12—H12A | 109.5 |
C17—N2—C13 | 117.4 (9) | O5—C12—H12B | 109.5 |
C17—N2—Cu1 | 108.9 (6) | H12A—C12—H12B | 109.5 |
C13—N2—Cu1 | 133.5 (7) | O5—C12—H12C | 109.5 |
C22—N3—C18 | 117.7 (9) | H12A—C12—H12C | 109.5 |
C22—N3—Cu1 | 125.6 (7) | H12B—C12—H12C | 109.5 |
C18—N3—Cu1 | 116.6 (6) | N2—C13—C14 | 123.6 (11) |
C1—O1—Cu1 | 114.4 (7) | N2—C13—H13 | 118.2 |
C3—O3—H3 | 109.5 | C14—C13—H13 | 118.2 |
C7—O4—Cu1 | 125.9 (6) | C15—C14—C13 | 118.4 (12) |
C8—O5—C12 | 119.1 (10) | C15—C14—H14 | 120.8 |
H25—O6—H26 | 104.6 | C13—C14—H14 | 120.8 |
O1—C1—O2 | 123.5 (11) | C14—C15—C16 | 119.8 (11) |
O1—C1—C2 | 117.2 (9) | C14—C15—H15 | 120.1 |
O2—C1—C2 | 119.2 (10) | C16—C15—H15 | 120.1 |
N1—C2—C1 | 107.3 (8) | C15—C16—C17 | 120.6 (11) |
N1—C2—C3 | 107.9 (8) | C15—C16—C23 | 123.3 (9) |
C1—C2—C3 | 106.7 (9) | C17—C16—C23 | 115.8 (10) |
N1—C2—H2 | 111.6 | N2—C17—C16 | 119.9 (10) |
C1—C2—H2 | 111.6 | N2—C17—C18 | 116.5 (7) |
C3—C2—H2 | 111.6 | C16—C17—C18 | 123.5 (10) |
O3—C3—C4 | 114.2 (9) | N3—C18—C17 | 119.7 (7) |
O3—C3—C2 | 110.4 (9) | N3—C18—C19 | 121.4 (9) |
C4—C3—C2 | 111.3 (9) | C17—C18—C19 | 118.9 (10) |
O3—C3—H3A | 106.8 | C20—C19—C24 | 120.6 (9) |
C4—C3—H3A | 106.8 | C20—C19—C18 | 120.0 (10) |
C2—C3—H3A | 106.8 | C24—C19—C18 | 119.4 (10) |
C3—C4—H4A | 109.5 | C19—C20—C21 | 116.7 (11) |
C3—C4—H4B | 109.5 | C19—C20—H20 | 121.6 |
H4A—C4—H4B | 109.5 | C21—C20—H20 | 121.6 |
C3—C4—H4C | 109.5 | C22—C21—C20 | 121.9 (11) |
H4A—C4—H4C | 109.5 | C22—C21—H21 | 119.1 |
H4B—C4—H4C | 109.5 | C20—C21—H21 | 119.1 |
N1—C5—C6 | 124.9 (10) | N3—C22—C21 | 122.0 (11) |
N1—C5—H5 | 117.6 | N3—C22—H22 | 119.0 |
C6—C5—H5 | 117.6 | C21—C22—H22 | 119.0 |
C7—C6—C11 | 118.8 (9) | C24—C23—C16 | 122.6 (11) |
C7—C6—C5 | 124.4 (8) | C24—C23—H23 | 118.7 |
C11—C6—C5 | 116.9 (9) | C16—C23—H23 | 118.7 |
O4—C7—C6 | 123.9 (8) | C23—C24—C19 | 119.7 (11) |
O4—C7—C8 | 117.1 (9) | C23—C24—H24 | 120.1 |
C6—C7—C8 | 119.0 (10) | C19—C24—H24 | 120.1 |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O2i | 0.82 | 2.10 | 2.767 (11) | 138 |
Symmetry code: (i) −y+3/2, x−1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C12H13NO5)(C12H8N2)]·0.5H2O |
Mr | 503.99 |
Crystal system, space group | Tetragonal, I4 |
Temperature (K) | 293 |
a, c (Å) | 22.527 (6), 10.290 (4) |
V (Å3) | 5222 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.87 |
Crystal size (mm) | 0.50 × 0.15 × 0.11 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.669, 0.910 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13788, 4560, 2419 |
Rint | 0.084 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.076, 0.267, 0.90 |
No. of reflections | 4560 |
No. of parameters | 307 |
No. of restraints | 511 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.83, −0.40 |
Absolute structure | Flack (1983), 2126 Friedel pairs |
Absolute structure parameter | −0.13 (5) |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Cu1—N1 | 1.940 (8) | Cu1—O1 | 1.966 (6) |
Cu1—N2 | 2.263 (9) | Cu1—O4 | 1.924 (7) |
Cu1—N3 | 2.004 (8) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O2i | 0.82 | 2.10 | 2.767 (11) | 138 |
Symmetry code: (i) −y+3/2, x−1/2, z−1/2. |
Acknowledgements
The authors thank the Natural Science Foundation of Shandong Province (No. Y2004B02) for a research grant.
References
Bruker (2007). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Chohan, Z. H., Praveen, M. & Ghaffer, A. (1998). Synth. React. Inorg. Met. Org. Chem. 28, 1673–1687. CrossRef CAS Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Huang, L., Dong, J., Jing, B., Li, L. & Wang, D. (2010). Acta Cryst. E66, m1553. Web of Science CSD CrossRef IUCr Journals Google Scholar
Nath, M., Pokharia, S. & Yadav, R. (2001). Coord. Chem. Rev. 215, 99–149. Web of Science CrossRef CAS Google Scholar
Qiu, Z., Li, L., Liu, Y., Xu, T. & Wang, D. (2008). Acta Cryst. E64, m745–m746. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Yamada, S. (1966). Coord. Chem. Rev. 1, 415–437. CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Schiff bases still play an important role as ligands in metal coordination chemistry even after almost a century since their discovery (Yamada et al., 1966). It has been reported that amino acid Schiff bases and their first row transition metal complexes exhibit fungicidal, bactericidal, antiviral and antitubercular activities (Chohan et al., 1998; Nath et al., 2001). Herein, we report the synthesis and crystal structure of a new copper(II) complex with a tridentate Schiff base ligand, derived from the condensation of L-threonine and o-vanillin, and a 1,10-phenanthroline coligand.
The title complex has a mononuclear structure with an amino acid Schiff base ligand and a 1,10-phenanthroline ligand. As shown in Fig. 1, the CuII ion is five-coordinated by one N atom and two O atoms from the Schiff base ligand and by two N atoms from the 1,10-phenanthroline ligand, forming a seriously distorted square-pyramidal geometry. O1, O4, N1 and N3 atoms are located in the basal plane and N2 atom in the apical position. The CuII ion lies 0.1651 (4) Å above the basal plane towards N2. The Cu1—N2 bond is significantly longer [2.263 (9) Å] (Table 1) as seen previously [2.298 (4) Å] (Huang et al., 2010) and [2.231 (3) Å] (Qiu et al., 2008). In the crystal, intermolecular O3—H3···O2i (symmetry code: 3/2-y, -1/2+x, -1/2+z) hydrogen bonds (Table 2) form a one-dimensional left-handed helical structure (Fig. 2).