organic compounds
β-acetoxyolean-11,12-aziridin-28,13-β-olide
of 3aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Pulau Penang, Malaysia, and bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The title compound, C32H49NO4, has been isolated from the dichloromethane extract of the stem bark of Garcinia atroviridis Griff. ex T. Anders. Rings A and B, B and C, and C and D are trans-fused, whereas rings D and E are cis-fused. Rings A, B, C and E have slightly distorted chair conformations, while ring D is most heavily distorted towards a half-chair conformation owing to the strain induced by the lactonization. The ester group attached to ring A is in an equatorial position.
Related literature
For details and applications of Garcinia atroviridis Griff. ex T. Anders, see: Permana et al. (2001); Amran et al. (2009). For bond-length data, see: Allen et al. (1987). For ring conformations, see: Cremer & Pople (1975). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811014875/is2699sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811014875/is2699Isup2.hkl
Air-dried stem bark of G. atroviridis was ground and sequentially extracted in a Soxhlet apparatus with hexane, dichloromethane and methanol. The dichloromethane extract after concentration was subjected to silica gel
using a hexane-chloroform-ethylacetate-methanol gradient to afford 58 fractions (D1–D58). Fraction D8 was further fractionated with hexane-ethyl acetate gradient as the eluting solvent, to afford 25 sub-fractions (D8a–D8y). The solid from fractions D8c–D8d was recrystallized from ethanol to yield the title compound (m.p. 581–583 K) as a colourless crystalline solid.All hydrogen atoms were positioned geometrically (N—H = 0.88 Å and C—H = 0.98–1.0 Å) and were refined using a riding model, with Uiso(H) = 1.2Ueq(C). 721 Friedel pairs were used to determine the absolute configuration.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The asymmetric unit of the title compound. Displacement ellipsoids are drawn at the 30% probability level. H atoms omitted for clarity. |
C32H49NO4 | F(000) = 1120 |
Mr = 511.72 | Dx = 1.228 Mg m−3 |
Monoclinic, C2 | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: C 2y | Cell parameters from 8407 reflections |
a = 13.0197 (2) Å | θ = 4.2–62.5° |
b = 6.7460 (1) Å | µ = 0.62 mm−1 |
c = 32.0674 (5) Å | T = 100 K |
β = 100.6452 (4)° | Block, colourless |
V = 2768.04 (7) Å3 | 0.73 × 0.15 × 0.14 mm |
Z = 4 |
Bruker SMART APEX DUO CCD area-detector diffractometer | 3061 independent reflections |
Radiation source: fine-focus sealed tube | 3050 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ϕ and ω scans | θmax = 62.5°, θmin = 4.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −14→14 |
Tmin = 0.659, Tmax = 0.917 | k = −7→5 |
8407 measured reflections | l = −36→36 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.033 | H-atom parameters constrained |
wR(F2) = 0.087 | w = 1/[σ2(Fo2) + (0.0534P)2 + 1.724P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max = 0.001 |
3061 reflections | Δρmax = 0.32 e Å−3 |
342 parameters | Δρmin = −0.37 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 721 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.1 (2) |
C32H49NO4 | V = 2768.04 (7) Å3 |
Mr = 511.72 | Z = 4 |
Monoclinic, C2 | Cu Kα radiation |
a = 13.0197 (2) Å | µ = 0.62 mm−1 |
b = 6.7460 (1) Å | T = 100 K |
c = 32.0674 (5) Å | 0.73 × 0.15 × 0.14 mm |
β = 100.6452 (4)° |
Bruker SMART APEX DUO CCD area-detector diffractometer | 3061 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3050 reflections with I > 2σ(I) |
Tmin = 0.659, Tmax = 0.917 | Rint = 0.018 |
8407 measured reflections |
R[F2 > 2σ(F2)] = 0.033 | H-atom parameters constrained |
wR(F2) = 0.087 | Δρmax = 0.32 e Å−3 |
S = 1.02 | Δρmin = −0.37 e Å−3 |
3061 reflections | Absolute structure: Flack (1983), 721 Friedel pairs |
342 parameters | Absolute structure parameter: 0.1 (2) |
1 restraint |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.32106 (11) | −0.0737 (2) | 0.17064 (4) | 0.0246 (3) | |
O2 | 0.62607 (11) | 0.4500 (2) | 0.44068 (4) | 0.0270 (4) | |
O3 | 0.67821 (13) | 0.7573 (3) | 0.42805 (4) | 0.0378 (4) | |
O4 | 0.19103 (13) | −0.2023 (3) | 0.12291 (5) | 0.0355 (4) | |
N1 | 0.55624 (13) | 0.2185 (4) | 0.21012 (6) | 0.0339 (5) | |
H1 | 0.5937 | 0.3172 | 0.2030 | 0.041* | |
C1 | 0.24506 (16) | −0.0616 (4) | 0.13528 (6) | 0.0246 (5) | |
C2 | 0.24394 (14) | 0.1455 (3) | 0.11795 (6) | 0.0205 (4) | |
C3 | 0.21283 (15) | 0.1641 (4) | 0.06963 (6) | 0.0218 (4) | |
H3A | 0.1363 | 0.1478 | 0.0611 | 0.026* | |
H3B | 0.2472 | 0.0582 | 0.0558 | 0.026* | |
C4 | 0.24546 (15) | 0.3678 (4) | 0.05499 (6) | 0.0243 (5) | |
H4A | 0.2039 | 0.4715 | 0.0661 | 0.029* | |
H4B | 0.2283 | 0.3734 | 0.0236 | 0.029* | |
C5 | 0.36277 (16) | 0.4152 (4) | 0.06945 (6) | 0.0256 (5) | |
C6 | 0.39041 (15) | 0.4014 (4) | 0.11863 (6) | 0.0234 (5) | |
H6A | 0.4663 | 0.4229 | 0.1283 | 0.028* | |
H6B | 0.3525 | 0.5055 | 0.1314 | 0.028* | |
C7 | 0.36000 (15) | 0.1978 (3) | 0.13284 (6) | 0.0196 (4) | |
H7A | 0.3993 | 0.1012 | 0.1181 | 0.023* | |
C8 | 0.37372 (15) | 0.1226 (3) | 0.17907 (6) | 0.0197 (4) | |
C9 | 0.31546 (14) | 0.2417 (3) | 0.20917 (5) | 0.0169 (4) | |
C10 | 0.19759 (14) | 0.2301 (4) | 0.19046 (5) | 0.0217 (4) | |
H10A | 0.1599 | 0.3287 | 0.2049 | 0.026* | |
H10B | 0.1713 | 0.0969 | 0.1961 | 0.026* | |
C11 | 0.17391 (14) | 0.2695 (4) | 0.14213 (5) | 0.0214 (4) | |
H11A | 0.1845 | 0.4120 | 0.1369 | 0.026* | |
H11B | 0.0997 | 0.2377 | 0.1309 | 0.026* | |
C12 | 0.48492 (15) | 0.0697 (4) | 0.19851 (6) | 0.0282 (5) | |
H12A | 0.5131 | −0.0480 | 0.1854 | 0.034* | |
C13 | 0.52441 (15) | 0.0924 (4) | 0.24330 (6) | 0.0304 (6) | |
H13A | 0.5763 | −0.0087 | 0.2568 | 0.036* | |
C14 | 0.46077 (14) | 0.1942 (3) | 0.27216 (5) | 0.0184 (4) | |
H14A | 0.4692 | 0.3391 | 0.2672 | 0.022* | |
C15 | 0.50418 (14) | 0.1640 (3) | 0.32060 (6) | 0.0194 (4) | |
C16 | 0.61602 (14) | 0.2523 (4) | 0.32994 (6) | 0.0234 (5) | |
H16A | 0.6639 | 0.1625 | 0.3183 | 0.028* | |
H16B | 0.6158 | 0.3814 | 0.3153 | 0.028* | |
C17 | 0.65743 (15) | 0.2823 (4) | 0.37752 (6) | 0.0243 (5) | |
H17A | 0.6627 | 0.1528 | 0.3923 | 0.029* | |
H17B | 0.7280 | 0.3423 | 0.3818 | 0.029* | |
C18 | 0.58362 (15) | 0.4169 (3) | 0.39561 (5) | 0.0230 (5) | |
H18A | 0.5801 | 0.5472 | 0.3805 | 0.028* | |
C19 | 0.47224 (15) | 0.3357 (3) | 0.39178 (6) | 0.0222 (5) | |
C20 | 0.43358 (14) | 0.2950 (3) | 0.34356 (5) | 0.0192 (4) | |
H20A | 0.4339 | 0.4281 | 0.3299 | 0.023* | |
C21 | 0.31921 (14) | 0.2264 (4) | 0.33240 (5) | 0.0218 (4) | |
H21A | 0.3146 | 0.0843 | 0.3396 | 0.026* | |
H21B | 0.2765 | 0.3026 | 0.3493 | 0.026* | |
C22 | 0.27630 (14) | 0.2569 (4) | 0.28508 (5) | 0.0217 (4) | |
H22A | 0.2741 | 0.4007 | 0.2788 | 0.026* | |
H22B | 0.2038 | 0.2061 | 0.2785 | 0.026* | |
C23 | 0.34200 (14) | 0.1521 (3) | 0.25602 (6) | 0.0183 (4) | |
C24 | 0.66861 (15) | 0.6269 (3) | 0.45241 (6) | 0.0240 (5) | |
C25 | 0.7020 (2) | 0.6407 (4) | 0.49973 (7) | 0.0368 (6) | |
H25A | 0.6668 | 0.7533 | 0.5104 | 0.055* | |
H25B | 0.7778 | 0.6598 | 0.5068 | 0.055* | |
H25C | 0.6831 | 0.5182 | 0.5129 | 0.055* | |
C26 | 0.43081 (16) | 0.2772 (4) | 0.04793 (6) | 0.0336 (6) | |
H26A | 0.5047 | 0.3078 | 0.0582 | 0.050* | |
H26B | 0.4140 | 0.2964 | 0.0171 | 0.050* | |
H26C | 0.4171 | 0.1391 | 0.0547 | 0.050* | |
C27 | 0.38219 (18) | 0.6281 (4) | 0.05690 (6) | 0.0342 (6) | |
H27A | 0.4548 | 0.6647 | 0.0684 | 0.051* | |
H27B | 0.3349 | 0.7174 | 0.0684 | 0.051* | |
H27C | 0.3693 | 0.6391 | 0.0259 | 0.051* | |
C28 | 0.34752 (16) | 0.4625 (3) | 0.20954 (6) | 0.0227 (5) | |
H28A | 0.3000 | 0.5337 | 0.1873 | 0.034* | |
H28B | 0.4192 | 0.4731 | 0.2043 | 0.034* | |
H28C | 0.3438 | 0.5205 | 0.2372 | 0.034* | |
C29 | 0.51138 (16) | −0.0556 (4) | 0.33404 (6) | 0.0255 (5) | |
H29A | 0.5653 | −0.0711 | 0.3595 | 0.038* | |
H29B | 0.5296 | −0.1362 | 0.3110 | 0.038* | |
H29C | 0.4438 | −0.0992 | 0.3401 | 0.038* | |
C30 | 0.40528 (17) | 0.5014 (4) | 0.40603 (6) | 0.0296 (5) | |
H30A | 0.4392 | 0.5506 | 0.4339 | 0.044* | |
H30B | 0.3360 | 0.4490 | 0.4078 | 0.044* | |
H30C | 0.3980 | 0.6101 | 0.3854 | 0.044* | |
C31 | 0.46755 (16) | 0.1551 (4) | 0.42054 (6) | 0.0270 (5) | |
H31A | 0.4845 | 0.1964 | 0.4503 | 0.040* | |
H31B | 0.5181 | 0.0554 | 0.4150 | 0.040* | |
H31C | 0.3971 | 0.0984 | 0.4146 | 0.040* | |
C32 | 0.31756 (17) | −0.0706 (3) | 0.25724 (6) | 0.0246 (5) | |
H32A | 0.3163 | −0.1105 | 0.2865 | 0.037* | |
H32B | 0.3716 | −0.1460 | 0.2465 | 0.037* | |
H32C | 0.2493 | −0.0971 | 0.2395 | 0.037* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0363 (8) | 0.0157 (8) | 0.0206 (6) | 0.0029 (7) | 0.0019 (5) | −0.0023 (6) |
O2 | 0.0373 (8) | 0.0246 (9) | 0.0164 (6) | −0.0043 (7) | −0.0025 (5) | 0.0014 (6) |
O3 | 0.0515 (9) | 0.0313 (10) | 0.0270 (7) | −0.0149 (9) | −0.0024 (6) | 0.0025 (8) |
O4 | 0.0508 (9) | 0.0236 (10) | 0.0292 (7) | −0.0085 (8) | 0.0001 (7) | −0.0039 (7) |
N1 | 0.0171 (8) | 0.0479 (14) | 0.0367 (9) | −0.0027 (9) | 0.0048 (7) | −0.0081 (10) |
C1 | 0.0309 (10) | 0.0235 (13) | 0.0194 (9) | −0.0020 (10) | 0.0045 (7) | −0.0024 (9) |
C2 | 0.0205 (9) | 0.0193 (11) | 0.0212 (9) | 0.0002 (9) | 0.0024 (7) | −0.0009 (9) |
C3 | 0.0224 (9) | 0.0237 (12) | 0.0180 (9) | −0.0003 (9) | 0.0001 (7) | −0.0030 (8) |
C4 | 0.0265 (10) | 0.0295 (13) | 0.0157 (8) | −0.0002 (10) | 0.0008 (7) | 0.0017 (9) |
C5 | 0.0271 (10) | 0.0305 (14) | 0.0188 (9) | −0.0020 (10) | 0.0033 (7) | 0.0029 (9) |
C6 | 0.0196 (9) | 0.0314 (14) | 0.0185 (9) | −0.0025 (9) | 0.0017 (7) | 0.0008 (9) |
C7 | 0.0203 (9) | 0.0213 (13) | 0.0173 (8) | 0.0031 (8) | 0.0038 (7) | −0.0021 (8) |
C8 | 0.0231 (9) | 0.0150 (12) | 0.0210 (9) | 0.0025 (9) | 0.0043 (7) | −0.0018 (8) |
C9 | 0.0182 (9) | 0.0143 (11) | 0.0183 (8) | 0.0028 (8) | 0.0035 (7) | −0.0014 (8) |
C10 | 0.0199 (9) | 0.0254 (12) | 0.0200 (9) | 0.0040 (9) | 0.0043 (7) | −0.0003 (9) |
C11 | 0.0185 (8) | 0.0236 (12) | 0.0205 (9) | 0.0019 (9) | −0.0003 (7) | −0.0001 (9) |
C12 | 0.0246 (10) | 0.0370 (15) | 0.0241 (10) | 0.0137 (11) | 0.0074 (8) | −0.0003 (10) |
C13 | 0.0234 (9) | 0.0482 (17) | 0.0193 (9) | 0.0122 (11) | 0.0035 (8) | −0.0008 (10) |
C14 | 0.0198 (9) | 0.0177 (12) | 0.0177 (8) | 0.0022 (8) | 0.0036 (7) | −0.0008 (8) |
C15 | 0.0205 (9) | 0.0210 (12) | 0.0163 (8) | 0.0031 (9) | 0.0025 (7) | −0.0002 (8) |
C16 | 0.0205 (9) | 0.0301 (13) | 0.0195 (9) | 0.0031 (9) | 0.0034 (7) | 0.0017 (9) |
C17 | 0.0225 (9) | 0.0295 (13) | 0.0195 (9) | −0.0016 (10) | 0.0006 (7) | 0.0038 (9) |
C18 | 0.0318 (10) | 0.0221 (13) | 0.0135 (8) | −0.0025 (10) | −0.0005 (7) | 0.0010 (9) |
C19 | 0.0280 (10) | 0.0217 (12) | 0.0176 (9) | 0.0017 (9) | 0.0059 (7) | −0.0002 (8) |
C20 | 0.0224 (9) | 0.0182 (12) | 0.0172 (8) | 0.0023 (9) | 0.0041 (7) | 0.0020 (8) |
C21 | 0.0217 (9) | 0.0256 (12) | 0.0194 (9) | 0.0003 (9) | 0.0072 (7) | −0.0019 (9) |
C22 | 0.0193 (8) | 0.0243 (12) | 0.0216 (9) | 0.0035 (9) | 0.0042 (7) | −0.0007 (9) |
C23 | 0.0194 (9) | 0.0168 (11) | 0.0191 (9) | 0.0013 (8) | 0.0044 (7) | −0.0022 (8) |
C24 | 0.0228 (9) | 0.0257 (13) | 0.0228 (10) | 0.0004 (10) | 0.0019 (7) | 0.0003 (10) |
C25 | 0.0522 (13) | 0.0316 (15) | 0.0242 (10) | −0.0048 (12) | 0.0009 (9) | −0.0020 (10) |
C26 | 0.0277 (10) | 0.0529 (18) | 0.0213 (9) | 0.0005 (12) | 0.0069 (8) | −0.0001 (11) |
C27 | 0.0378 (11) | 0.0404 (16) | 0.0229 (10) | −0.0111 (12) | 0.0018 (9) | 0.0070 (10) |
C28 | 0.0300 (10) | 0.0180 (12) | 0.0192 (9) | 0.0017 (9) | 0.0021 (7) | −0.0006 (9) |
C29 | 0.0321 (10) | 0.0210 (12) | 0.0213 (9) | 0.0071 (10) | −0.0005 (8) | −0.0009 (9) |
C30 | 0.0349 (11) | 0.0317 (15) | 0.0215 (9) | 0.0058 (10) | 0.0038 (8) | −0.0042 (9) |
C31 | 0.0317 (10) | 0.0299 (13) | 0.0195 (9) | −0.0041 (10) | 0.0053 (8) | 0.0015 (9) |
C32 | 0.0342 (11) | 0.0181 (12) | 0.0210 (9) | −0.0048 (10) | 0.0033 (8) | 0.0016 (9) |
O1—C1 | 1.363 (2) | C15—C20 | 1.555 (3) |
O1—C8 | 1.493 (3) | C16—C17 | 1.535 (2) |
O2—C24 | 1.340 (3) | C16—H16A | 0.9900 |
O2—C18 | 1.466 (2) | C16—H16B | 0.9900 |
O3—C24 | 1.198 (3) | C17—C18 | 1.514 (3) |
O4—C1 | 1.204 (3) | C17—H17A | 0.9900 |
N1—C12 | 1.371 (3) | C17—H17B | 0.9900 |
N1—C13 | 1.480 (3) | C18—C19 | 1.534 (3) |
N1—H1 | 0.8800 | C18—H18A | 1.0000 |
C1—C2 | 1.502 (3) | C19—C31 | 1.536 (3) |
C2—C3 | 1.533 (2) | C19—C30 | 1.538 (3) |
C2—C7 | 1.539 (3) | C19—C20 | 1.560 (2) |
C2—C11 | 1.547 (3) | C20—C21 | 1.537 (2) |
C3—C4 | 1.537 (3) | C20—H20A | 1.0000 |
C3—H3A | 0.9900 | C21—C22 | 1.531 (2) |
C3—H3B | 0.9900 | C21—H21A | 0.9900 |
C4—C5 | 1.546 (3) | C21—H21B | 0.9900 |
C4—H4A | 0.9900 | C22—C23 | 1.547 (3) |
C4—H4B | 0.9900 | C22—H22A | 0.9900 |
C5—C27 | 1.525 (4) | C22—H22B | 0.9900 |
C5—C26 | 1.534 (3) | C23—C32 | 1.538 (3) |
C5—C6 | 1.554 (2) | C24—C25 | 1.502 (3) |
C6—C7 | 1.522 (3) | C25—H25A | 0.9800 |
C6—H6A | 0.9900 | C25—H25B | 0.9800 |
C6—H6B | 0.9900 | C25—H25C | 0.9800 |
C7—C8 | 1.546 (2) | C26—H26A | 0.9800 |
C7—H7A | 1.0000 | C26—H26B | 0.9800 |
C8—C12 | 1.510 (3) | C26—H26C | 0.9800 |
C8—C9 | 1.557 (2) | C27—H27A | 0.9800 |
C9—C10 | 1.543 (2) | C27—H27B | 0.9800 |
C9—C28 | 1.546 (3) | C27—H27C | 0.9800 |
C9—C23 | 1.597 (2) | C28—H28A | 0.9800 |
C10—C11 | 1.546 (2) | C28—H28B | 0.9800 |
C10—H10A | 0.9900 | C28—H28C | 0.9800 |
C10—H10B | 0.9900 | C29—H29A | 0.9800 |
C11—H11A | 0.9900 | C29—H29B | 0.9800 |
C11—H11B | 0.9900 | C29—H29C | 0.9800 |
C12—C13 | 1.442 (3) | C30—H30A | 0.9800 |
C12—H12A | 1.0000 | C30—H30B | 0.9800 |
C13—C14 | 1.516 (3) | C30—H30C | 0.9800 |
C13—H13A | 1.0000 | C31—H31A | 0.9800 |
C14—C23 | 1.563 (2) | C31—H31B | 0.9800 |
C14—C15 | 1.565 (2) | C31—H31C | 0.9800 |
C14—H14A | 1.0000 | C32—H32A | 0.9800 |
C15—C29 | 1.541 (3) | C32—H32B | 0.9800 |
C15—C16 | 1.550 (3) | C32—H32C | 0.9800 |
C1—O1—C8 | 109.63 (16) | C15—C16—H16B | 109.0 |
C24—O2—C18 | 118.26 (16) | H16A—C16—H16B | 107.8 |
C12—N1—C13 | 60.61 (15) | C18—C17—C16 | 109.20 (15) |
C12—N1—H1 | 149.7 | C18—C17—H17A | 109.8 |
C13—N1—H1 | 149.7 | C16—C17—H17A | 109.8 |
O4—C1—O1 | 121.1 (2) | C18—C17—H17B | 109.8 |
O4—C1—C2 | 130.24 (18) | C16—C17—H17B | 109.8 |
O1—C1—C2 | 108.64 (18) | H17A—C17—H17B | 108.3 |
C1—C2—C3 | 115.65 (17) | O2—C18—C17 | 108.59 (15) |
C1—C2—C7 | 99.01 (16) | O2—C18—C19 | 108.18 (14) |
C3—C2—C7 | 110.84 (15) | C17—C18—C19 | 114.38 (18) |
C1—C2—C11 | 106.48 (16) | O2—C18—H18A | 108.5 |
C3—C2—C11 | 113.10 (16) | C17—C18—H18A | 108.5 |
C7—C2—C11 | 110.87 (16) | C19—C18—H18A | 108.5 |
C2—C3—C4 | 110.22 (16) | C18—C19—C31 | 112.16 (16) |
C2—C3—H3A | 109.6 | C18—C19—C30 | 107.22 (18) |
C4—C3—H3A | 109.6 | C31—C19—C30 | 108.08 (16) |
C2—C3—H3B | 109.6 | C18—C19—C20 | 105.63 (14) |
C4—C3—H3B | 109.6 | C31—C19—C20 | 114.48 (18) |
H3A—C3—H3B | 108.1 | C30—C19—C20 | 109.00 (16) |
C3—C4—C5 | 114.01 (17) | C21—C20—C15 | 110.54 (16) |
C3—C4—H4A | 108.8 | C21—C20—C19 | 113.90 (14) |
C5—C4—H4A | 108.8 | C15—C20—C19 | 117.30 (15) |
C3—C4—H4B | 108.8 | C21—C20—H20A | 104.5 |
C5—C4—H4B | 108.8 | C15—C20—H20A | 104.5 |
H4A—C4—H4B | 107.6 | C19—C20—H20A | 104.5 |
C27—C5—C26 | 108.38 (18) | C22—C21—C20 | 110.53 (15) |
C27—C5—C4 | 108.57 (18) | C22—C21—H21A | 109.5 |
C26—C5—C4 | 111.10 (18) | C20—C21—H21A | 109.5 |
C27—C5—C6 | 107.80 (18) | C22—C21—H21B | 109.5 |
C26—C5—C6 | 112.04 (17) | C20—C21—H21B | 109.5 |
C4—C5—C6 | 108.83 (15) | H21A—C21—H21B | 108.1 |
C7—C6—C5 | 109.49 (17) | C21—C22—C23 | 113.23 (16) |
C7—C6—H6A | 109.8 | C21—C22—H22A | 108.9 |
C5—C6—H6A | 109.8 | C23—C22—H22A | 108.9 |
C7—C6—H6B | 109.8 | C21—C22—H22B | 108.9 |
C5—C6—H6B | 109.8 | C23—C22—H22B | 108.9 |
H6A—C6—H6B | 108.2 | H22A—C22—H22B | 107.7 |
C6—C7—C2 | 114.13 (17) | C32—C23—C22 | 106.92 (17) |
C6—C7—C8 | 126.37 (17) | C32—C23—C14 | 111.44 (17) |
C2—C7—C8 | 98.92 (15) | C22—C23—C14 | 109.92 (15) |
C6—C7—H7A | 105.2 | C32—C23—C9 | 112.57 (16) |
C2—C7—H7A | 105.2 | C22—C23—C9 | 110.26 (16) |
C8—C7—H7A | 105.2 | C14—C23—C9 | 105.77 (14) |
O1—C8—C12 | 103.81 (17) | O3—C24—O2 | 123.95 (18) |
O1—C8—C7 | 98.61 (14) | O3—C24—C25 | 124.6 (2) |
C12—C8—C7 | 113.93 (15) | O2—C24—C25 | 111.48 (19) |
O1—C8—C9 | 108.06 (14) | C24—C25—H25A | 109.5 |
C12—C8—C9 | 113.95 (15) | C24—C25—H25B | 109.5 |
C7—C8—C9 | 116.24 (17) | H25A—C25—H25B | 109.5 |
C10—C9—C28 | 107.43 (17) | C24—C25—H25C | 109.5 |
C10—C9—C8 | 107.23 (15) | H25A—C25—H25C | 109.5 |
C28—C9—C8 | 109.88 (15) | H25B—C25—H25C | 109.5 |
C10—C9—C23 | 111.93 (15) | C5—C26—H26A | 109.5 |
C28—C9—C23 | 110.24 (16) | C5—C26—H26B | 109.5 |
C8—C9—C23 | 110.04 (16) | H26A—C26—H26B | 109.5 |
C9—C10—C11 | 112.39 (14) | C5—C26—H26C | 109.5 |
C9—C10—H10A | 109.1 | H26A—C26—H26C | 109.5 |
C11—C10—H10A | 109.1 | H26B—C26—H26C | 109.5 |
C9—C10—H10B | 109.1 | C5—C27—H27A | 109.5 |
C11—C10—H10B | 109.1 | C5—C27—H27B | 109.5 |
H10A—C10—H10B | 107.9 | H27A—C27—H27B | 109.5 |
C10—C11—C2 | 112.49 (16) | C5—C27—H27C | 109.5 |
C10—C11—H11A | 109.1 | H27A—C27—H27C | 109.5 |
C2—C11—H11A | 109.1 | H27B—C27—H27C | 109.5 |
C10—C11—H11B | 109.1 | C9—C28—H28A | 109.5 |
C2—C11—H11B | 109.1 | C9—C28—H28B | 109.5 |
H11A—C11—H11B | 107.8 | H28A—C28—H28B | 109.5 |
N1—C12—C13 | 63.43 (16) | C9—C28—H28C | 109.5 |
N1—C12—C8 | 119.3 (2) | H28A—C28—H28C | 109.5 |
C13—C12—C8 | 121.65 (17) | H28B—C28—H28C | 109.5 |
N1—C12—H12A | 114.4 | C15—C29—H29A | 109.5 |
C13—C12—H12A | 114.4 | C15—C29—H29B | 109.5 |
C8—C12—H12A | 114.4 | H29A—C29—H29B | 109.5 |
C12—C13—N1 | 55.96 (15) | C15—C29—H29C | 109.5 |
C12—C13—C14 | 121.46 (17) | H29A—C29—H29C | 109.5 |
N1—C13—C14 | 115.9 (2) | H29B—C29—H29C | 109.5 |
C12—C13—H13A | 116.5 | C19—C30—H30A | 109.5 |
N1—C13—H13A | 116.5 | C19—C30—H30B | 109.5 |
C14—C13—H13A | 116.5 | H30A—C30—H30B | 109.5 |
C13—C14—C23 | 109.54 (15) | C19—C30—H30C | 109.5 |
C13—C14—C15 | 114.15 (16) | H30A—C30—H30C | 109.5 |
C23—C14—C15 | 117.30 (15) | H30B—C30—H30C | 109.5 |
C13—C14—H14A | 104.8 | C19—C31—H31A | 109.5 |
C23—C14—H14A | 104.8 | C19—C31—H31B | 109.5 |
C15—C14—H14A | 104.8 | H31A—C31—H31B | 109.5 |
C29—C15—C16 | 107.99 (18) | C19—C31—H31C | 109.5 |
C29—C15—C20 | 115.13 (16) | H31A—C31—H31C | 109.5 |
C16—C15—C20 | 107.86 (17) | H31B—C31—H31C | 109.5 |
C29—C15—C14 | 113.26 (16) | C23—C32—H32A | 109.5 |
C16—C15—C14 | 107.20 (15) | C23—C32—H32B | 109.5 |
C20—C15—C14 | 105.03 (15) | H32A—C32—H32B | 109.5 |
C17—C16—C15 | 112.80 (15) | C23—C32—H32C | 109.5 |
C17—C16—H16A | 109.0 | H32A—C32—H32C | 109.5 |
C15—C16—H16A | 109.0 | H32B—C32—H32C | 109.5 |
C17—C16—H16B | 109.0 | ||
C8—O1—C1—O4 | −178.70 (18) | C12—N1—C13—C14 | −111.9 (2) |
C8—O1—C1—C2 | 0.5 (2) | C12—C13—C14—C23 | 33.2 (3) |
O4—C1—C2—C3 | −33.0 (3) | N1—C13—C14—C23 | 97.6 (2) |
O1—C1—C2—C3 | 147.89 (16) | C12—C13—C14—C15 | 167.0 (2) |
O4—C1—C2—C7 | −151.4 (2) | N1—C13—C14—C15 | −128.61 (18) |
O1—C1—C2—C7 | 29.49 (19) | C13—C14—C15—C29 | −58.5 (2) |
O4—C1—C2—C11 | 93.6 (2) | C23—C14—C15—C29 | 71.6 (2) |
O1—C1—C2—C11 | −85.54 (19) | C13—C14—C15—C16 | 60.5 (2) |
C1—C2—C3—C4 | −163.28 (17) | C23—C14—C15—C16 | −169.39 (18) |
C7—C2—C3—C4 | −51.7 (2) | C13—C14—C15—C20 | 175.07 (19) |
C11—C2—C3—C4 | 73.6 (2) | C23—C14—C15—C20 | −54.8 (2) |
C2—C3—C4—C5 | 55.2 (2) | C29—C15—C16—C17 | −72.5 (2) |
C3—C4—C5—C27 | −174.19 (16) | C20—C15—C16—C17 | 52.5 (2) |
C3—C4—C5—C26 | 66.7 (2) | C14—C15—C16—C17 | 165.10 (18) |
C3—C4—C5—C6 | −57.1 (2) | C15—C16—C17—C18 | −57.9 (3) |
C27—C5—C6—C7 | 173.35 (17) | C24—O2—C18—C17 | 106.1 (2) |
C26—C5—C6—C7 | −67.5 (2) | C24—O2—C18—C19 | −129.18 (19) |
C4—C5—C6—C7 | 55.8 (2) | C16—C17—C18—O2 | −177.98 (17) |
C5—C6—C7—C2 | −57.1 (2) | C16—C17—C18—C19 | 61.1 (2) |
C5—C6—C7—C8 | −179.84 (18) | O2—C18—C19—C31 | −52.2 (2) |
C1—C2—C7—C6 | 177.12 (15) | C17—C18—C19—C31 | 69.0 (2) |
C3—C2—C7—C6 | 55.2 (2) | O2—C18—C19—C30 | 66.3 (2) |
C11—C2—C7—C6 | −71.3 (2) | C17—C18—C19—C30 | −172.55 (16) |
C1—C2—C7—C8 | −46.17 (17) | O2—C18—C19—C20 | −177.56 (17) |
C3—C2—C7—C8 | −168.12 (18) | C17—C18—C19—C20 | −56.4 (2) |
C11—C2—C7—C8 | 65.4 (2) | C29—C15—C20—C21 | −64.4 (2) |
C1—O1—C8—C12 | −147.48 (15) | C16—C15—C20—C21 | 175.02 (16) |
C1—O1—C8—C7 | −30.11 (18) | C14—C15—C20—C21 | 60.9 (2) |
C1—O1—C8—C9 | 91.20 (17) | C29—C15—C20—C19 | 68.5 (2) |
C6—C7—C8—O1 | 175.33 (17) | C16—C15—C20—C19 | −52.1 (2) |
C2—C7—C8—O1 | 46.32 (17) | C14—C15—C20—C19 | −166.21 (17) |
C6—C7—C8—C12 | −75.3 (3) | C18—C19—C20—C21 | −175.71 (18) |
C2—C7—C8—C12 | 155.67 (19) | C31—C19—C20—C21 | 60.4 (2) |
C6—C7—C8—C9 | 60.2 (2) | C30—C19—C20—C21 | −60.8 (2) |
C2—C7—C8—C9 | −68.8 (2) | C18—C19—C20—C15 | 53.0 (2) |
O1—C8—C9—C10 | −48.83 (19) | C31—C19—C20—C15 | −71.0 (2) |
C12—C8—C9—C10 | −163.63 (19) | C30—C19—C20—C15 | 167.88 (18) |
C7—C8—C9—C10 | 60.8 (2) | C15—C20—C21—C22 | −64.6 (2) |
O1—C8—C9—C28 | −165.30 (14) | C19—C20—C21—C22 | 160.85 (18) |
C12—C8—C9—C28 | 79.9 (2) | C20—C21—C22—C23 | 56.1 (2) |
C7—C8—C9—C28 | −55.6 (2) | C21—C22—C23—C32 | 74.7 (2) |
O1—C8—C9—C23 | 73.13 (18) | C21—C22—C23—C14 | −46.4 (2) |
C12—C8—C9—C23 | −41.7 (2) | C21—C22—C23—C9 | −162.63 (17) |
C7—C8—C9—C23 | −177.21 (16) | C13—C14—C23—C32 | 62.1 (2) |
C28—C9—C10—C11 | 72.3 (2) | C15—C14—C23—C32 | −70.1 (2) |
C8—C9—C10—C11 | −45.8 (2) | C13—C14—C23—C22 | −179.53 (19) |
C23—C9—C10—C11 | −166.56 (18) | C15—C14—C23—C22 | 48.3 (2) |
C9—C10—C11—C2 | 49.1 (3) | C13—C14—C23—C9 | −60.5 (2) |
C1—C2—C11—C10 | 45.1 (2) | C15—C14—C23—C9 | 167.27 (17) |
C3—C2—C11—C10 | 173.17 (18) | C10—C9—C23—C32 | 63.8 (2) |
C7—C2—C11—C10 | −61.6 (2) | C28—C9—C23—C32 | −176.72 (16) |
C13—N1—C12—C8 | 113.1 (2) | C8—C9—C23—C32 | −55.4 (2) |
O1—C8—C12—N1 | 179.68 (16) | C10—C9—C23—C22 | −55.5 (2) |
C7—C8—C12—N1 | 73.5 (2) | C28—C9—C23—C22 | 64.0 (2) |
C9—C8—C12—N1 | −63.0 (2) | C8—C9—C23—C22 | −174.65 (16) |
O1—C8—C12—C13 | −105.2 (2) | C10—C9—C23—C14 | −174.31 (17) |
C7—C8—C12—C13 | 148.7 (2) | C28—C9—C23—C14 | −54.80 (19) |
C9—C8—C12—C13 | 12.1 (3) | C8—C9—C23—C14 | 66.6 (2) |
C8—C12—C13—N1 | −109.5 (3) | C18—O2—C24—O3 | −3.3 (3) |
N1—C12—C13—C14 | 101.7 (3) | C18—O2—C24—C25 | 176.38 (17) |
C8—C12—C13—C14 | −7.8 (4) |
Experimental details
Crystal data | |
Chemical formula | C32H49NO4 |
Mr | 511.72 |
Crystal system, space group | Monoclinic, C2 |
Temperature (K) | 100 |
a, b, c (Å) | 13.0197 (2), 6.7460 (1), 32.0674 (5) |
β (°) | 100.6452 (4) |
V (Å3) | 2768.04 (7) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.62 |
Crystal size (mm) | 0.73 × 0.15 × 0.14 |
Data collection | |
Diffractometer | Bruker SMART APEX DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.659, 0.917 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8407, 3061, 3050 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.575 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.087, 1.02 |
No. of reflections | 3061 |
No. of parameters | 342 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.32, −0.37 |
Absolute structure | Flack (1983), 721 Friedel pairs |
Absolute structure parameter | 0.1 (2) |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
TWN, WKC and MK wish to acknowledge the research grant RU1001/PKIMIA/811129 provided by the Universiti Sains Malaysia, Penang, that has resulted in this article. TWN would like to thank USM for the award of a postgraduate fellowship. MH and HKF thank the Malaysian Government and Universiti Sains Malaysia for the Research University grant No. 1001/PFIZIK/811160. MH also thanks Universiti Sains Malaysia for a postdoctoral research fellowship.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Amran, A. A., Zaiton, Z., Faizah, O. & Morat, P. (2009). Singapore Med. J. 50, 295–299. Web of Science PubMed CAS Google Scholar
Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107. CrossRef CAS Web of Science IUCr Journals Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Permana, D., Lajis, N. H., Mackeen, M. M., Ali, A. M., Aimi, N., Kitajima, M. & Takayama, H. (2001). J. Nat. Prod. 64, 976–979. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Garcinia atroviridis Griff. ex T. Anders. (Clusiaceae) is a medium-sized fruit tree which may be found growing wild or cultivated throughout Peninsular Malaysia (Permana et al., 2001). In folkloric medicine, it has been used as a postpartum medication agent as well as an agent to treat earache, throat irritation, cough, dandruff and some stomachache associated with pregnancy (Amran et al., 2009). In our research on this plant, the stem bark extracts of G. atroviridis were examined. The title compound (I), 3β-acetoxyolean-11,12-aziridin-28,13-β-olide, has been isolated from the dichloromethane extract.
The title molecule presented in Fig. 1 contains five six-membered rings, namely, A (C15–C20), B (C14/C15/C20–C23), C (C9/C8/C12–C14/C23), D (C2/C7–C11) and E (C2–C7). The ester group attached to ring A is in an equatorial position. The bond distances (Allen et al., 1987) and angles in (I) are as expected. Rings A/B, B/C and C/D are trans-fused, whereas rings D/E are cis-fused. Rings A, B, C and E have slightly distorted chair conformations, ring D being most heavily distorted towards a half-chair conformation due to the strain induced by the lactonization, as shown by the Cremer & Pople, (1975) parameters: [ring A: Q = 0.572 (2) Å, θ = 175.5 (2)° and ϕ = 325 (3)°; B: Q = 0.584 (2) Å, θ = 11.6 (2)° and f = 118.6 (10)°; C: Q = 0.574 (2) Å, θ = 46.9 (2)° and ϕ = 111.4 (3)°; D: Q = 0.629 (2) Å, θ = 166.06 (18)° and f = 236.5 (8); E: Q = 0.571 (2) Å, θ = 3.8 (2)° and f = 202 (4)°]. The absolute configurations of the natural product molecule were determined by the refinement of the Flack parameter to 0.1 (2). There are eleven chiral centres in the molecule. From the structure presented, these centers exhibit the following chiralities: C2 = S, C7 = R, C8 = S, C9 = S, C12 = S, C13 = S, C14 = R, C15 = S, C18 = S, C20 = R and C23 = R. There are no classical hydrogen bond, weak interaction, Cg–Cg and C—H···π interactions in the crystal packing.