organic compounds
of fibaruretin B
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
*Correspondence e-mail: hkfun@usm.my
The title furanoditerpenoid, known as fibaruretin B (systematic name: 2β,3α-dihydroxy-2,3,7,8α-tetrahydropenianthic acid lactone), C20H24O7, was isolated from the roots of Arcangelisia flava. The absolute configurations at positions 2, 3, 4, 4a, 7, 9, 10a and 10b of fibaruretin B are S, R, S, R, S, S, S and S, respectively. In the the molecules are linked into infinite chains along the c axis by O—H⋯O hydrogen bonds and weak C—H⋯O interactions.
Related literature
For ring conformations, see: Cremer & Pople (1975). For bond-length data, see: Allen et al. (1987). For background to and activities of furanoditerpenoids, see: Ito & Furukawa (1969); Keawpradub et al. (2005); Moody et al. (2006); Nguyen-Pouplin et al. (2007); Su et al. (2008). For a related structure, see: Bakhari et al. (1998). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811014887/is2703sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811014887/is2703Isup2.hkl
The air-dried roots of Arcangelisia flava (Menispermaceae) (1.8 kg) were extracted with CH2Cl2 (2 × 10 l) under room temperature. The combined extracts were concentrated under reduced pressure to give a yellow extract (30.1 g) which was subjected to quick
over silica gel using solvents of increasing polarity from n-hexane to EtOAc to afford 10 fractions (F1–F10). Fraction F9 was further purified by using CH2Cl2–EtOAc (6:4), yielding the title compound as a white solid (275.3 mg). Colorless needle-shaped single crystals of the title compound suitable for X-ray were recrystallized from CH2Cl2 by the slow evaporation of the solvent at room temperature after several days (m.p. 539–540 K).Hydroxy H atom was located from the difference map and refined isotropically. The remaining H atoms were placed in calculated positions with C—H = 0.93 for aromatic, 0.96 Å for CH3, 0.97 for CH2 and 0.98 Å for CH. The Uiso(H) values were constrained to be 1.5Ueq of the 1 0) was omitted.
for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups. The highest residual electron density peak is located at 0.78 Å from H6B and the deepest hole is located at 1.51 Å from C10. 1098 Friedel pairs were used to determine the Outlier reflection (1Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The structure of the title compound, showing 50% probability displacement ellipsoids and the atom-numbering scheme. | |
Fig. 2. The crystal packing of (I) viewed along the a axis, showing chains along the c axis. Hydrogen bonds are drawn as dashed lines. |
C20H24O7 | F(000) = 400 |
Mr = 376.39 | Dx = 1.476 Mg m−3 |
Monoclinic, P21 | Melting point = 539–540 K |
Hall symbol: P 2yb | Cu Kα radiation, λ = 1.54178 Å |
a = 7.0942 (2) Å | Cell parameters from 2645 reflections |
b = 11.7149 (4) Å | θ = 4.3–66.5° |
c = 10.1921 (3) Å | µ = 0.93 mm−1 |
β = 90.805 (1)° | T = 100 K |
V = 846.96 (5) Å3 | Needle, colourless |
Z = 2 | 0.43 × 0.12 × 0.08 mm |
Bruker APEX DUO CCD area-detector diffractometer | 2645 independent reflections |
Radiation source: sealed tube | 2641 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ϕ and ω scans | θmax = 66.5°, θmin = 4.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −8→8 |
Tmin = 0.692, Tmax = 0.926 | k = −11→13 |
11247 measured reflections | l = −11→12 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.025 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.066 | w = 1/[σ2(Fo2) + (0.0393P)2 + 0.1838P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
2645 reflections | Δρmax = 0.19 e Å−3 |
254 parameters | Δρmin = −0.15 e Å−3 |
1 restraint | Absolute structure: Flack (1983), with 1098 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.03 (12) |
C20H24O7 | V = 846.96 (5) Å3 |
Mr = 376.39 | Z = 2 |
Monoclinic, P21 | Cu Kα radiation |
a = 7.0942 (2) Å | µ = 0.93 mm−1 |
b = 11.7149 (4) Å | T = 100 K |
c = 10.1921 (3) Å | 0.43 × 0.12 × 0.08 mm |
β = 90.805 (1)° |
Bruker APEX DUO CCD area-detector diffractometer | 2645 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2641 reflections with I > 2σ(I) |
Tmin = 0.692, Tmax = 0.926 | Rint = 0.018 |
11247 measured reflections |
R[F2 > 2σ(F2)] = 0.025 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.066 | Δρmax = 0.19 e Å−3 |
S = 1.09 | Δρmin = −0.15 e Å−3 |
2645 reflections | Absolute structure: Flack (1983), with 1098 Friedel pairs |
254 parameters | Absolute structure parameter: 0.03 (12) |
1 restraint |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.09153 (14) | 1.02466 (10) | 0.68755 (10) | 0.0211 (2) | |
O2 | 0.32424 (17) | 1.15137 (10) | 0.70124 (12) | 0.0296 (3) | |
O3 | 0.27902 (16) | 0.75672 (11) | 0.80552 (11) | 0.0252 (3) | |
H1O3 | 0.255 (4) | 0.732 (2) | 0.883 (3) | 0.061 (8)* | |
O4 | 0.55436 (14) | 0.96856 (12) | 0.80516 (10) | 0.0239 (3) | |
H1O4 | 0.527 (3) | 0.965 (2) | 0.888 (3) | 0.046 (6)* | |
O5 | 0.31561 (13) | 0.83615 (10) | 0.09804 (9) | 0.0178 (2) | |
O6 | 0.53283 (13) | 0.96975 (11) | 0.09604 (9) | 0.0206 (2) | |
O7 | −0.09239 (17) | 0.58024 (10) | −0.04095 (11) | 0.0275 (3) | |
C1 | 0.08225 (19) | 0.83863 (15) | 0.58193 (13) | 0.0188 (3) | |
H1A | −0.0153 | 0.8680 | 0.5235 | 0.023* | |
H1B | 0.0542 | 0.7589 | 0.5981 | 0.023* | |
C2 | 0.07216 (19) | 0.90202 (14) | 0.70997 (14) | 0.0185 (3) | |
H2A | −0.0459 | 0.8851 | 0.7547 | 0.022* | |
C3 | 0.2412 (2) | 0.87467 (14) | 0.79792 (13) | 0.0181 (3) | |
H3A | 0.2207 | 0.9052 | 0.8861 | 0.022* | |
C4 | 0.39121 (19) | 0.94530 (14) | 0.72888 (14) | 0.0170 (3) | |
C5 | 0.45100 (19) | 0.89413 (13) | 0.59309 (13) | 0.0147 (3) | |
C6 | 0.56241 (19) | 0.98757 (13) | 0.51939 (14) | 0.0162 (3) | |
H6A | 0.4927 | 1.0586 | 0.5247 | 0.019* | |
H6B | 0.6821 | 0.9989 | 0.5647 | 0.019* | |
C7 | 0.60174 (18) | 0.96286 (14) | 0.37404 (14) | 0.0163 (3) | |
H7A | 0.6105 | 1.0347 | 0.3272 | 0.020* | |
H7B | 0.7225 | 0.9246 | 0.3676 | 0.020* | |
C8 | 0.44977 (18) | 0.88869 (13) | 0.30780 (13) | 0.0145 (3) | |
H8A | 0.4901 | 0.8096 | 0.3218 | 0.017* | |
C9 | 0.25169 (18) | 0.89794 (14) | 0.37078 (13) | 0.0151 (3) | |
C10 | 0.27476 (18) | 0.84594 (14) | 0.51044 (13) | 0.0147 (3) | |
H10A | 0.3078 | 0.7660 | 0.4940 | 0.018* | |
C11 | 0.1130 (2) | 0.82256 (15) | 0.28832 (13) | 0.0200 (3) | |
H11A | 0.0532 | 0.7684 | 0.3465 | 0.024* | |
H11B | 0.0149 | 0.8712 | 0.2516 | 0.024* | |
C12 | 0.20406 (19) | 0.75715 (14) | 0.17735 (13) | 0.0158 (3) | |
H12A | 0.2855 | 0.6969 | 0.2132 | 0.019* | |
C13 | 0.0605 (2) | 0.70654 (14) | 0.08547 (14) | 0.0169 (3) | |
C14 | −0.1096 (2) | 0.75809 (15) | 0.03551 (14) | 0.0214 (3) | |
H14A | −0.1519 | 0.8318 | 0.0517 | 0.026* | |
C15 | −0.1952 (2) | 0.67891 (16) | −0.03912 (14) | 0.0245 (4) | |
H15A | −0.3091 | 0.6896 | −0.0837 | 0.029* | |
C16 | 0.0642 (2) | 0.60018 (15) | 0.03548 (15) | 0.0226 (3) | |
H16A | 0.1600 | 0.5475 | 0.0508 | 0.027* | |
C17 | 0.43951 (19) | 0.90427 (14) | 0.16102 (14) | 0.0161 (3) | |
C18 | 0.2742 (2) | 1.05332 (15) | 0.70502 (14) | 0.0196 (3) | |
C19 | 0.5852 (2) | 0.79280 (14) | 0.61724 (14) | 0.0185 (3) | |
H19A | 0.6860 | 0.8160 | 0.6751 | 0.028* | |
H19B | 0.6363 | 0.7681 | 0.5353 | 0.028* | |
H19C | 0.5170 | 0.7311 | 0.6564 | 0.028* | |
C20 | 0.17620 (19) | 1.02044 (14) | 0.36919 (14) | 0.0185 (3) | |
H20A | 0.0509 | 1.0215 | 0.4036 | 0.028* | |
H20B | 0.1736 | 1.0485 | 0.2807 | 0.028* | |
H20C | 0.2567 | 1.0681 | 0.4223 | 0.028* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0209 (5) | 0.0249 (7) | 0.0177 (5) | 0.0024 (4) | 0.0029 (4) | −0.0014 (5) |
O2 | 0.0385 (6) | 0.0192 (7) | 0.0313 (6) | −0.0040 (5) | 0.0147 (5) | −0.0054 (5) |
O3 | 0.0353 (6) | 0.0215 (6) | 0.0189 (6) | −0.0015 (5) | 0.0068 (5) | 0.0065 (5) |
O4 | 0.0183 (5) | 0.0407 (7) | 0.0125 (5) | −0.0077 (5) | −0.0016 (4) | −0.0034 (5) |
O5 | 0.0203 (5) | 0.0222 (6) | 0.0109 (4) | −0.0035 (4) | 0.0008 (4) | −0.0001 (4) |
O6 | 0.0215 (5) | 0.0262 (6) | 0.0143 (5) | −0.0042 (5) | 0.0021 (4) | 0.0028 (4) |
O7 | 0.0346 (6) | 0.0253 (7) | 0.0225 (6) | −0.0079 (5) | −0.0056 (4) | −0.0038 (5) |
C1 | 0.0175 (7) | 0.0248 (9) | 0.0141 (6) | −0.0075 (6) | 0.0010 (5) | −0.0010 (6) |
C2 | 0.0169 (7) | 0.0244 (9) | 0.0145 (7) | −0.0046 (6) | 0.0041 (5) | 0.0001 (6) |
C3 | 0.0209 (7) | 0.0223 (9) | 0.0112 (7) | −0.0035 (6) | 0.0025 (5) | −0.0010 (6) |
C4 | 0.0162 (6) | 0.0217 (9) | 0.0131 (6) | −0.0044 (6) | −0.0011 (5) | −0.0020 (6) |
C5 | 0.0147 (6) | 0.0171 (8) | 0.0124 (6) | −0.0016 (6) | 0.0005 (5) | −0.0007 (6) |
C6 | 0.0148 (6) | 0.0187 (8) | 0.0152 (7) | −0.0021 (6) | −0.0003 (5) | −0.0005 (6) |
C7 | 0.0140 (6) | 0.0205 (8) | 0.0144 (7) | −0.0022 (6) | 0.0016 (5) | 0.0005 (6) |
C8 | 0.0143 (6) | 0.0155 (8) | 0.0138 (7) | 0.0006 (5) | 0.0007 (5) | 0.0001 (6) |
C9 | 0.0142 (6) | 0.0189 (8) | 0.0122 (6) | −0.0022 (6) | 0.0012 (5) | −0.0010 (6) |
C10 | 0.0153 (6) | 0.0158 (8) | 0.0130 (7) | −0.0029 (5) | 0.0010 (5) | −0.0015 (5) |
C11 | 0.0159 (6) | 0.0296 (9) | 0.0144 (7) | −0.0044 (6) | 0.0011 (5) | −0.0045 (6) |
C12 | 0.0170 (6) | 0.0171 (8) | 0.0132 (6) | −0.0010 (6) | 0.0001 (5) | 0.0029 (6) |
C13 | 0.0197 (7) | 0.0185 (8) | 0.0124 (6) | −0.0032 (6) | 0.0022 (5) | 0.0012 (6) |
C14 | 0.0226 (7) | 0.0249 (9) | 0.0167 (7) | −0.0005 (6) | −0.0008 (5) | 0.0000 (6) |
C15 | 0.0248 (7) | 0.0310 (10) | 0.0177 (7) | −0.0055 (7) | −0.0041 (6) | 0.0004 (6) |
C16 | 0.0280 (8) | 0.0209 (9) | 0.0190 (7) | −0.0036 (6) | −0.0008 (6) | −0.0012 (6) |
C17 | 0.0146 (6) | 0.0178 (8) | 0.0158 (7) | 0.0040 (6) | 0.0010 (5) | −0.0013 (6) |
C18 | 0.0254 (7) | 0.0210 (9) | 0.0125 (6) | −0.0025 (6) | 0.0070 (5) | −0.0040 (6) |
C19 | 0.0166 (6) | 0.0218 (9) | 0.0172 (6) | 0.0012 (6) | 0.0005 (5) | 0.0035 (6) |
C20 | 0.0171 (6) | 0.0232 (9) | 0.0152 (7) | 0.0032 (6) | −0.0005 (5) | 0.0016 (6) |
O1—C18 | 1.3482 (19) | C7—C8 | 1.5338 (19) |
O1—C2 | 1.462 (2) | C7—H7A | 0.9700 |
O2—C18 | 1.203 (2) | C7—H7B | 0.9700 |
O3—C3 | 1.409 (2) | C8—C17 | 1.5078 (19) |
O3—H1O3 | 0.86 (3) | C8—C9 | 1.5568 (17) |
O4—C4 | 1.4117 (16) | C8—H8A | 0.9800 |
O4—H1O4 | 0.87 (3) | C9—C20 | 1.532 (2) |
O5—C17 | 1.3437 (18) | C9—C10 | 1.5548 (19) |
O5—C12 | 1.4677 (17) | C9—C11 | 1.5593 (19) |
O6—C17 | 1.2156 (19) | C10—H10A | 0.9800 |
O7—C15 | 1.367 (2) | C11—C12 | 1.518 (2) |
O7—C16 | 1.3677 (18) | C11—H11A | 0.9700 |
C1—C2 | 1.504 (2) | C11—H11B | 0.9700 |
C1—C10 | 1.5593 (18) | C12—C13 | 1.4962 (19) |
C1—H1A | 0.9700 | C12—H12A | 0.9800 |
C1—H1B | 0.9700 | C13—C16 | 1.347 (2) |
C2—C3 | 1.521 (2) | C13—C14 | 1.436 (2) |
C2—H2A | 0.9800 | C14—C15 | 1.340 (2) |
C3—C4 | 1.528 (2) | C14—H14A | 0.9300 |
C3—H3A | 0.9800 | C15—H15A | 0.9300 |
C4—C18 | 1.531 (2) | C16—H16A | 0.9300 |
C4—C5 | 1.5720 (18) | C19—H19A | 0.9600 |
C5—C19 | 1.539 (2) | C19—H19B | 0.9600 |
C5—C6 | 1.550 (2) | C19—H19C | 0.9600 |
C5—C10 | 1.6006 (18) | C20—H20A | 0.9600 |
C6—C7 | 1.5388 (19) | C20—H20B | 0.9600 |
C6—H6A | 0.9700 | C20—H20C | 0.9600 |
C6—H6B | 0.9700 | ||
C18—O1—C2 | 108.45 (12) | C20—C9—C8 | 112.23 (12) |
C3—O3—H1O3 | 109.8 (19) | C10—C9—C8 | 105.44 (11) |
C4—O4—H1O4 | 109.2 (15) | C20—C9—C11 | 107.87 (11) |
C17—O5—C12 | 117.74 (10) | C10—C9—C11 | 109.21 (12) |
C15—O7—C16 | 106.07 (12) | C8—C9—C11 | 107.75 (11) |
C2—C1—C10 | 115.53 (12) | C9—C10—C1 | 111.57 (11) |
C2—C1—H1A | 108.4 | C9—C10—C5 | 114.52 (11) |
C10—C1—H1A | 108.4 | C1—C10—C5 | 117.14 (11) |
C2—C1—H1B | 108.4 | C9—C10—H10A | 103.9 |
C10—C1—H1B | 108.4 | C1—C10—H10A | 103.9 |
H1A—C1—H1B | 107.5 | C5—C10—H10A | 103.9 |
O1—C2—C1 | 110.12 (12) | C12—C11—C9 | 114.55 (11) |
O1—C2—C3 | 102.95 (12) | C12—C11—H11A | 108.6 |
C1—C2—C3 | 111.13 (12) | C9—C11—H11A | 108.6 |
O1—C2—H2A | 110.8 | C12—C11—H11B | 108.6 |
C1—C2—H2A | 110.8 | C9—C11—H11B | 108.6 |
C3—C2—H2A | 110.8 | H11A—C11—H11B | 107.6 |
O3—C3—C2 | 112.76 (13) | O5—C12—C13 | 105.82 (10) |
O3—C3—C4 | 115.02 (13) | O5—C12—C11 | 109.30 (12) |
C2—C3—C4 | 99.38 (11) | C13—C12—C11 | 111.92 (11) |
O3—C3—H3A | 109.7 | O5—C12—H12A | 109.9 |
C2—C3—H3A | 109.7 | C13—C12—H12A | 109.9 |
C4—C3—H3A | 109.7 | C11—C12—H12A | 109.9 |
O4—C4—C3 | 114.97 (12) | C16—C13—C14 | 105.98 (13) |
O4—C4—C18 | 111.49 (13) | C16—C13—C12 | 125.95 (15) |
C3—C4—C18 | 98.12 (11) | C14—C13—C12 | 128.05 (15) |
O4—C4—C5 | 109.22 (11) | C15—C14—C13 | 106.37 (16) |
C3—C4—C5 | 113.41 (12) | C15—C14—H14A | 126.8 |
C18—C4—C5 | 109.13 (12) | C13—C14—H14A | 126.8 |
C19—C5—C6 | 107.67 (11) | C14—C15—O7 | 110.84 (14) |
C19—C5—C4 | 109.10 (11) | C14—C15—H15A | 124.6 |
C6—C5—C4 | 107.64 (12) | O7—C15—H15A | 124.6 |
C19—C5—C10 | 106.79 (12) | C13—C16—O7 | 110.72 (14) |
C6—C5—C10 | 113.19 (11) | C13—C16—H16A | 124.6 |
C4—C5—C10 | 112.30 (10) | O7—C16—H16A | 124.6 |
C7—C6—C5 | 115.73 (12) | O6—C17—O5 | 118.17 (13) |
C7—C6—H6A | 108.3 | O6—C17—C8 | 126.71 (13) |
C5—C6—H6A | 108.3 | O5—C17—C8 | 115.10 (12) |
C7—C6—H6B | 108.3 | O2—C18—O1 | 121.13 (15) |
C5—C6—H6B | 108.3 | O2—C18—C4 | 129.41 (14) |
H6A—C6—H6B | 107.4 | O1—C18—C4 | 109.46 (13) |
C8—C7—C6 | 113.24 (11) | C5—C19—H19A | 109.5 |
C8—C7—H7A | 108.9 | C5—C19—H19B | 109.5 |
C6—C7—H7A | 108.9 | H19A—C19—H19B | 109.5 |
C8—C7—H7B | 108.9 | C5—C19—H19C | 109.5 |
C6—C7—H7B | 108.9 | H19A—C19—H19C | 109.5 |
H7A—C7—H7B | 107.7 | H19B—C19—H19C | 109.5 |
C17—C8—C7 | 113.08 (12) | C9—C20—H20A | 109.5 |
C17—C8—C9 | 111.68 (11) | C9—C20—H20B | 109.5 |
C7—C8—C9 | 114.33 (11) | H20A—C20—H20B | 109.5 |
C17—C8—H8A | 105.6 | C9—C20—H20C | 109.5 |
C7—C8—H8A | 105.6 | H20A—C20—H20C | 109.5 |
C9—C8—H8A | 105.6 | H20B—C20—H20C | 109.5 |
C20—C9—C10 | 114.15 (11) | ||
C18—O1—C2—C1 | −94.59 (13) | C2—C1—C10—C9 | −121.36 (14) |
C18—O1—C2—C3 | 23.98 (14) | C2—C1—C10—C5 | 13.4 (2) |
C10—C1—C2—O1 | 64.85 (17) | C19—C5—C10—C9 | −116.27 (13) |
C10—C1—C2—C3 | −48.58 (18) | C6—C5—C10—C9 | 2.04 (17) |
O1—C2—C3—O3 | −164.81 (11) | C4—C5—C10—C9 | 124.18 (13) |
C1—C2—C3—O3 | −46.95 (16) | C19—C5—C10—C1 | 110.25 (14) |
O1—C2—C3—C4 | −42.52 (13) | C6—C5—C10—C1 | −131.43 (13) |
C1—C2—C3—C4 | 75.34 (15) | C4—C5—C10—C1 | −9.29 (18) |
O3—C3—C4—O4 | −77.80 (16) | C20—C9—C11—C12 | 124.47 (13) |
C2—C3—C4—O4 | 161.55 (13) | C10—C9—C11—C12 | −110.95 (14) |
O3—C3—C4—C18 | 163.86 (12) | C8—C9—C11—C12 | 3.10 (18) |
C2—C3—C4—C18 | 43.21 (13) | C17—O5—C12—C13 | 171.56 (12) |
O3—C3—C4—C5 | 48.87 (17) | C17—O5—C12—C11 | 50.87 (15) |
C2—C3—C4—C5 | −71.78 (15) | C9—C11—C12—O5 | −51.14 (16) |
O4—C4—C5—C19 | 52.16 (16) | C9—C11—C12—C13 | −168.04 (13) |
C3—C4—C5—C19 | −77.48 (15) | O5—C12—C13—C16 | 105.01 (16) |
C18—C4—C5—C19 | 174.28 (12) | C11—C12—C13—C16 | −136.03 (16) |
O4—C4—C5—C6 | −64.40 (15) | O5—C12—C13—C14 | −76.91 (17) |
C3—C4—C5—C6 | 165.96 (12) | C11—C12—C13—C14 | 42.1 (2) |
C18—C4—C5—C6 | 57.71 (14) | C16—C13—C14—C15 | 0.54 (17) |
O4—C4—C5—C10 | 170.36 (13) | C12—C13—C14—C15 | −177.84 (14) |
C3—C4—C5—C10 | 40.72 (17) | C13—C14—C15—O7 | −0.09 (18) |
C18—C4—C5—C10 | −67.53 (15) | C16—O7—C15—C14 | −0.40 (17) |
C19—C5—C6—C7 | 73.55 (14) | C14—C13—C16—O7 | −0.81 (17) |
C4—C5—C6—C7 | −168.95 (12) | C12—C13—C16—O7 | 177.62 (13) |
C10—C5—C6—C7 | −44.25 (16) | C15—O7—C16—C13 | 0.76 (16) |
C5—C6—C7—C8 | 29.86 (17) | C12—O5—C17—O6 | 179.82 (13) |
C6—C7—C8—C17 | 155.77 (13) | C12—O5—C17—C8 | 0.97 (18) |
C6—C7—C8—C9 | 26.47 (18) | C7—C8—C17—O6 | −2.4 (2) |
C17—C8—C9—C20 | −71.31 (15) | C9—C8—C17—O6 | 128.28 (16) |
C7—C8—C9—C20 | 58.69 (15) | C7—C8—C17—O5 | 176.37 (12) |
C17—C8—C9—C10 | 163.84 (13) | C9—C8—C17—O5 | −52.99 (17) |
C7—C8—C9—C10 | −66.16 (16) | C2—O1—C18—O2 | −174.62 (13) |
C17—C8—C9—C11 | 47.30 (17) | C2—O1—C18—C4 | 5.10 (14) |
C7—C8—C9—C11 | 177.30 (12) | O4—C4—C18—O2 | 27.2 (2) |
C20—C9—C10—C1 | 61.69 (15) | C3—C4—C18—O2 | 148.19 (15) |
C8—C9—C10—C1 | −174.68 (12) | C5—C4—C18—O2 | −93.50 (18) |
C11—C9—C10—C1 | −59.14 (16) | O4—C4—C18—O1 | −152.46 (11) |
C20—C9—C10—C5 | −74.33 (14) | C3—C4—C18—O1 | −31.50 (13) |
C8—C9—C10—C5 | 49.30 (16) | C5—C4—C18—O1 | 86.81 (13) |
C11—C9—C10—C5 | 164.85 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H1O3···O5i | 0.86 (3) | 2.54 (3) | 3.1305 (15) | 127 (2) |
O4—H1O4···O6i | 0.87 (3) | 2.12 (3) | 2.9708 (14) | 165 (2) |
C3—H3A···O5i | 0.98 | 2.39 | 3.1295 (16) | 131 |
C6—H6A···O2 | 0.97 | 2.43 | 3.1718 (19) | 133 |
C8—H8A···O2ii | 0.98 | 2.29 | 3.2113 (19) | 157 |
C19—H19C···O3 | 0.96 | 2.31 | 2.9489 (18) | 124 |
C20—H20B···O7iii | 0.96 | 2.53 | 3.4613 (18) | 164 |
Symmetry codes: (i) x, y, z+1; (ii) −x+1, y−1/2, −z+1; (iii) −x, y+1/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C20H24O7 |
Mr | 376.39 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 7.0942 (2), 11.7149 (4), 10.1921 (3) |
β (°) | 90.805 (1) |
V (Å3) | 846.96 (5) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 0.93 |
Crystal size (mm) | 0.43 × 0.12 × 0.08 |
Data collection | |
Diffractometer | Bruker APEX DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.692, 0.926 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11247, 2645, 2641 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.025, 0.066, 1.09 |
No. of reflections | 2645 |
No. of parameters | 254 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.19, −0.15 |
Absolute structure | Flack (1983), with 1098 Friedel pairs |
Absolute structure parameter | 0.03 (12) |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H1O3···O5i | 0.86 (3) | 2.54 (3) | 3.1305 (15) | 127 (2) |
O4—H1O4···O6i | 0.87 (3) | 2.12 (3) | 2.9708 (14) | 165 (2) |
C3—H3A···O5i | 0.98 | 2.39 | 3.1295 (16) | 131 |
C6—H6A···O2 | 0.97 | 2.43 | 3.1718 (19) | 133 |
C8—H8A···O2ii | 0.98 | 2.29 | 3.2113 (19) | 157 |
C19—H19C···O3 | 0.96 | 2.31 | 2.9489 (18) | 124 |
C20—H20B···O7iii | 0.96 | 2.53 | 3.4613 (18) | 164 |
Symmetry codes: (i) x, y, z+1; (ii) −x+1, y−1/2, −z+1; (iii) −x, y+1/2, −z. |
Acknowledgements
AWS thanks the Universiti Sains Malaysia for a PhD Student Visiting Fellowship. SC thanks the Prince of Songkla University for financial support through the Crystal Materials Research Unit. The authors thank the Universiti Sains Malaysia for Research University Grant No. 1001/PFIZIK/811151.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Furanoditerpenoids are secondary metabolites which were found in Menispermaceae plants such as Fibraurea chloroleuta Miers (Ito & Furukawa, 1969), Fibraurea tinctoria Lour. (Su et al., 2008) and Sphenocentrum jollyanum Pierre (Moody et al., 2006). They were found to possess biological properties such as anti-inflammatory and antimalarial activities. Arcangelisia flava (Menispermaceae), commonly called `Khaminkhruea' in the southern Thailand, is widely distributed from Hainan (China), Indo-China, southern peninsular Thailand, peninsular Malaysia, Sumatra, Java, Borneo, the Philipines, Sulawesi, the Northern Moluccas to New Guinea. It is an available medicinal plant used for the treatment of malaria, dysentery and as a tonic. The antimalarial, cytotoxic and antioxidant effects of this plant have been reported (Nguyen-Pouplin et al., 2007; Keawpradub et al., 2005). During the course of our study of bioactive compounds from medicinal plants, the title furanoditerpenoid compound, (I), which is known as fibaruretin B, was isolated for the first time from the roots of Arcangelisia flava (Menispermaceae) which were collected from Songkhla province in the southern part of Thailand. The absolute configuration of (I) was determined by making use of the anomalous scattering of Cu Kα radiation with the Flack parameter being refined to 0.03 (12).
The molecule of (I) has four fused rings consisting of one five- and three six-membered rings (A/B/C/D) (Fig. 1). The two cyclohexane rings A and B are cis fused, whereas the cyclohexane ring B and pyran ring C are trans fused. The cyclohexane ring A (C1–C5/C10) is in an envelope conformation, with the pucker atom C3 (0.4436 (16) Å) and puckering parameter Q = 0.6349 (16) Å, θ = 46.82 (14)° and ϕ = 115.0 (2)° (Cremer & Pople, 1975). The cyclohexane ring B (C5–C10) adopts a twisted boat conformation with puckering parameter Q = 0.7098 (15) Å, θ = 99.25 (12)° and ϕ = 45.65 (13)°. The pyran ring C (O5/C17/C8/C9/C11/C12) is in a boat conformation with puckering parameter Q = 0.7026 (15) Å, θ = 89.67 (12)° and ϕ = 241.68 (12)°. The tetrahydrofuran ring D (O1/C2–C4/C18) is in an envelope conformation, with the pucker atom C3 [-0.2883 (16) Å] and puckering parameter Q = 0.4584 (16) Å and ϕ = 258.04 (19)°. The furan ring (C13–C16/O7) is planar with an r.m.s. 0.0028 (2) Å and is equatorially attached to the pyran ring C with torsion angles O5—C12—C13—C14 = -76.91 (15)° and O5—C12—C13—C16 = 105.01 (16)°. The bond distances in (I) are within normal ranges (Allen et al., 1987) and comparable with the related structure (Bakhari et al., 1998).
The absolute configuration at atoms C2, C3, C4, C5, C8, C12, C9, C10 or positions 2, 3, 4, 4a, 7, 9, 10a and 10b of the fibaruretin B are S, R, S, R, S, S, S and S, respectively which agree with the previous stereochemistry of fibaruretin B (Su et al., 2008).
In the crystal packing of (I) (Fig. 2), the molecules are linked into chains along the c axis through O—H···O hydrogen bonds and C—H···O weak interactions (Fig. 2 and Table 1) and the crystal is stabilized by these interactions.