metal-organic compounds
trans-Dichloridobis[(pyridin-4-yl)boronic acid-κN]palladium(II) dimethyl sulfoxide disolvate
aDépartement de Chimie, Université de Montréal, 2900 Boulevard Edouard-Montpetit, Montréal, Québec, Canada H3C 3J7
*Correspondence e-mail: thierry.maris@umontreal.ca
In the title compound, [PdCl2(C5H6BNO2)2]·2C2H6OS, the PdII ion is located on an inversion centre and is four-coordinated in a trans square-planar geometry by two chloride ions and two (pyridin-4-yl)boronic acid ligands. The Pd—N and Pd—Cl distances are 2.023 (2) and 2.2977 (7) Å, respectively, and the average N—Pd—Cl angle is 90°. The dimethyl sulfoxide solvent molecules play a key role in the by bridging the complex molecules via O—H⋯O hydrogen bonds, forming tapes running along the b axis. C—H⋯O interactions also contribute to the cohesion of the crystal.
Related literature
For other PdII complexes with chloride and pyridine ligands, see: Qin et al. (2002); Viossat et al. (1993); Zordan & Brammer (2006).
Experimental
Crystal data
|
Refinement
|
Data collection: SMART (Bruker, 2003); cell SAINT (Bruker, 2003); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Materials Studio (Accelrys, 2002); software used to prepare material for publication: UdMX (Maris, 2004) and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811010713/kp2316sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811010713/kp2316Isup2.hkl
A suspension of PdCl2 (36 mg, 0.20 mmol) and (pyridin-4-yl)boronic acid (50 mg, 0.41 mmol) in MeCN (20 mL) was stirred for 16 h. The resulting mixture was filtered, and the solid was washed thoroughly with MeCN and then dried under vacuum before being purified by crystallization. Crystals of the title complex were grown by slow evaporation from a solution of the solid in DMSO.
All H-atoms were placed in calculated positions (C—H 0.95 - 0.98 Å) and were included in the
in the riding model approximation with U(H) set to 1.2Ueq (C) for aromatic H and 1.5Ueq (C) for methylene H. Hydroxyl H atoms were first located after a difference Fourier map calculation then refined in the riding model approximation using the AFIX 81 instruction from the SHELX program suite (Sheldrick, 2008), with O—H 0.84 Å and U(H) set to 1.2Ueq(O).Data collection: SMART (Bruker, 2003); cell
SAINT (Bruker, 2003); data reduction: SAINT (Bruker, 2003); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Materials Studio (Accelrys, 2002); software used to prepare material for publication: UdMX (Maris, 2004) and publCIF (Westrip, 2010).[PdCl2(C5H6BNO2)2]·2C2H6OS | Z = 1 |
Mr = 579.39 | F(000) = 292 |
Triclinic, P1 | Dx = 1.670 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54178 Å |
a = 6.2629 (4) Å | Cell parameters from 4582 reflections |
b = 8.1515 (5) Å | θ = 3.8–72.2° |
c = 11.7761 (7) Å | µ = 10.62 mm−1 |
α = 80.687 (3)° | T = 150 K |
β = 82.248 (3)° | Block, yellow |
γ = 77.456 (3)° | 0.12 × 0.09 × 0.08 mm |
V = 576.00 (6) Å3 |
Bruker SMART 6000 diffractometer | 2135 independent reflections |
Radiation source: Rotating Anode | 2031 reflections with I > 2σ(I) |
Montel 200 optics monochromator | Rint = 0.041 |
Detector resolution: 5.5 pixels mm-1 | θmax = 72.2°, θmin = 3.8° |
ω scans | h = −7→7 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | k = −10→9 |
Tmin = 0.252, Tmax = 0.428 | l = −14→14 |
6942 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.031 | H-atom parameters constrained |
wR(F2) = 0.082 | w = 1/[σ2(Fo2) + (0.0545P)2 + 0.0938P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max < 0.001 |
2135 reflections | Δρmax = 0.68 e Å−3 |
136 parameters | Δρmin = −0.87 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0025 (5) |
[PdCl2(C5H6BNO2)2]·2C2H6OS | γ = 77.456 (3)° |
Mr = 579.39 | V = 576.00 (6) Å3 |
Triclinic, P1 | Z = 1 |
a = 6.2629 (4) Å | Cu Kα radiation |
b = 8.1515 (5) Å | µ = 10.62 mm−1 |
c = 11.7761 (7) Å | T = 150 K |
α = 80.687 (3)° | 0.12 × 0.09 × 0.08 mm |
β = 82.248 (3)° |
Bruker SMART 6000 diffractometer | 2135 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | 2031 reflections with I > 2σ(I) |
Tmin = 0.252, Tmax = 0.428 | Rint = 0.041 |
6942 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | 0 restraints |
wR(F2) = 0.082 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.68 e Å−3 |
2135 reflections | Δρmin = −0.87 e Å−3 |
136 parameters |
Experimental. X-ray crystallographic data for I were collected from a single-crystal sample, which was mounted on a loop fiber. Data were collected using a Bruker Platform diffractometer, equipped with a Bruker SMART 4 K Charged-Coupled Device (CCD) Area Detector using the program APEX2 and a Nonius FR591 rotating anode equiped with Montel 200 optics The crystal-to-detector distance was 5.0 cm, and the data collection was carried out in 512 x 512 pixel mode. The initial unit-cell parameters were determined by a least-squares fit of the angular setting of strong reflections, collected by a 10.0 degree scan in 33 frames over four different parts of the reciprocal space (132 frames total). One complete sphere of data was collected to better than 0.80 Å resolution. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) were estimated using the full covariance matrix. The cell e.s.d.'s were taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters were only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s was used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Pd1 | 0.0000 | 0.0000 | 1.0000 | 0.01847 (14) | |
Cl1 | 0.11789 (13) | −0.28133 (9) | 0.97775 (6) | 0.02895 (19) | |
N1 | 0.2223 (4) | 0.0656 (3) | 0.86854 (18) | 0.0200 (5) | |
C2 | 0.3867 (5) | 0.1387 (4) | 0.8834 (2) | 0.0236 (6) | |
H2 | 0.4017 | 0.1599 | 0.9586 | 0.028* | |
C3 | 0.5340 (5) | 0.1837 (4) | 0.7926 (2) | 0.0233 (6) | |
H3 | 0.6538 | 0.2292 | 0.8067 | 0.028* | |
C4 | 0.5097 (5) | 0.1633 (4) | 0.6795 (2) | 0.0203 (6) | |
C5 | 0.3368 (5) | 0.0875 (4) | 0.6668 (2) | 0.0217 (6) | |
H5 | 0.3141 | 0.0695 | 0.5920 | 0.026* | |
C6 | 0.1981 (5) | 0.0384 (4) | 0.7615 (2) | 0.0223 (6) | |
H6 | 0.0835 | −0.0156 | 0.7511 | 0.027* | |
B7 | 0.6709 (6) | 0.2213 (5) | 0.5709 (3) | 0.0233 (7) | |
O8 | 0.8706 (4) | 0.2330 (3) | 0.59305 (17) | 0.0353 (6) | |
H8 | 0.9476 | 0.2547 | 0.5305 | 0.042* | |
O9 | 0.6102 (4) | 0.2582 (3) | 0.46159 (16) | 0.0296 (5) | |
H9 | 0.4748 | 0.2611 | 0.4638 | 0.036* | |
O10 | 0.1939 (4) | 0.2593 (3) | 0.41211 (16) | 0.0306 (5) | |
S10 | 0.13090 (13) | 0.28540 (10) | 0.28929 (6) | 0.02519 (19) | |
C11 | 0.3559 (6) | 0.3547 (5) | 0.1998 (3) | 0.0399 (9) | |
H11A | 0.4844 | 0.2613 | 0.2002 | 0.060* | |
H11B | 0.3909 | 0.4503 | 0.2294 | 0.060* | |
H11C | 0.3164 | 0.3905 | 0.1205 | 0.060* | |
C12 | −0.0641 (5) | 0.4798 (4) | 0.2747 (3) | 0.0318 (7) | |
H12A | −0.0058 | 0.5685 | 0.3002 | 0.048* | |
H12B | −0.2015 | 0.4657 | 0.3223 | 0.048* | |
H12C | −0.0925 | 0.5125 | 0.1935 | 0.048* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd1 | 0.01890 (19) | 0.0231 (2) | 0.01229 (16) | −0.00496 (12) | 0.00089 (10) | −0.00004 (11) |
Cl1 | 0.0351 (4) | 0.0237 (4) | 0.0244 (3) | −0.0038 (3) | 0.0060 (3) | −0.0028 (3) |
N1 | 0.0230 (13) | 0.0214 (12) | 0.0139 (10) | −0.0032 (10) | −0.0004 (9) | −0.0006 (9) |
C2 | 0.0244 (16) | 0.0282 (16) | 0.0172 (12) | −0.0038 (13) | −0.0012 (11) | −0.0028 (11) |
C3 | 0.0199 (15) | 0.0288 (16) | 0.0215 (12) | −0.0057 (13) | −0.0036 (11) | −0.0016 (11) |
C4 | 0.0164 (14) | 0.0251 (15) | 0.0165 (11) | −0.0021 (12) | 0.0020 (10) | −0.0002 (10) |
C5 | 0.0232 (15) | 0.0258 (15) | 0.0157 (11) | −0.0036 (12) | −0.0027 (10) | −0.0029 (10) |
C6 | 0.0230 (15) | 0.0238 (15) | 0.0195 (12) | −0.0045 (12) | −0.0038 (11) | −0.0006 (11) |
B7 | 0.0205 (17) | 0.0310 (18) | 0.0180 (13) | −0.0067 (14) | 0.0005 (12) | −0.0026 (12) |
O8 | 0.0205 (12) | 0.0661 (17) | 0.0194 (9) | −0.0150 (12) | −0.0018 (8) | 0.0021 (10) |
O9 | 0.0208 (11) | 0.0519 (15) | 0.0173 (9) | −0.0140 (10) | 0.0004 (8) | −0.0007 (9) |
O10 | 0.0199 (11) | 0.0520 (15) | 0.0180 (9) | −0.0087 (10) | −0.0045 (8) | 0.0051 (9) |
S10 | 0.0271 (4) | 0.0280 (4) | 0.0205 (3) | −0.0054 (3) | −0.0063 (3) | −0.0003 (3) |
C11 | 0.0300 (19) | 0.051 (2) | 0.0259 (15) | 0.0031 (17) | 0.0088 (13) | 0.0087 (15) |
C12 | 0.0251 (17) | 0.0374 (19) | 0.0289 (14) | −0.0008 (14) | −0.0010 (12) | −0.0011 (13) |
Pd1—N1i | 2.023 (2) | C6—H6 | 0.9500 |
Pd1—N1 | 2.023 (2) | B7—O8 | 1.338 (4) |
Pd1—Cl1i | 2.2977 (7) | B7—O9 | 1.360 (4) |
Pd1—Cl1 | 2.2977 (7) | O8—H8 | 0.8400 |
N1—C2 | 1.340 (4) | O9—H9 | 0.8400 |
N1—C6 | 1.348 (3) | O10—S10 | 1.5201 (19) |
C2—C3 | 1.372 (4) | S10—C12 | 1.778 (3) |
C2—H2 | 0.9500 | S10—C11 | 1.780 (3) |
C3—C4 | 1.401 (4) | C11—H11a | 0.9800 |
C3—H3 | 0.9500 | C11—H11b | 0.9800 |
C4—C5 | 1.393 (4) | C11—H11c | 0.9800 |
C4—B7 | 1.594 (4) | C12—H12a | 0.9800 |
C5—C6 | 1.380 (4) | C12—H12b | 0.9800 |
C5—H5 | 0.9500 | C12—H12c | 0.9800 |
N1i—Pd1—N1 | 180.0 | N1—C6—H6 | 119.4 |
N1i—Pd1—Cl1i | 90.64 (7) | C5—C6—H6 | 119.4 |
N1—Pd1—Cl1i | 89.36 (7) | O8—B7—O9 | 121.3 (3) |
N1i—Pd1—Cl1 | 89.36 (7) | O8—B7—C4 | 116.3 (3) |
N1—Pd1—Cl1 | 90.64 (7) | O9—B7—C4 | 122.4 (3) |
Cl1i—Pd1—Cl1 | 180.0 | B7—O8—H8 | 109.5 |
C2—N1—C6 | 119.3 (2) | B7—O9—H9 | 109.5 |
C2—N1—Pd1 | 122.71 (17) | O10—S10—C12 | 106.02 (14) |
C6—N1—Pd1 | 117.96 (19) | O10—S10—C11 | 105.38 (15) |
N1—C2—C3 | 121.6 (2) | C12—S10—C11 | 98.27 (17) |
N1—C2—H2 | 119.2 | S10—C11—H11A | 109.5 |
C3—C2—H2 | 119.2 | S10—C11—H11B | 109.5 |
C2—C3—C4 | 120.8 (3) | H11A—C11—H11B | 109.5 |
C2—C3—H3 | 119.6 | S10—C11—H11C | 109.5 |
C4—C3—H3 | 119.6 | H11A—C11—H11C | 109.5 |
C5—C4—C3 | 116.2 (2) | H11B—C11—H11C | 109.5 |
C5—C4—B7 | 121.4 (2) | S10—C12—H12A | 109.5 |
C3—C4—B7 | 122.4 (3) | S10—C12—H12B | 109.5 |
C6—C5—C4 | 120.8 (2) | H12A—C12—H12B | 109.5 |
C6—C5—H5 | 119.6 | S10—C12—H12C | 109.5 |
C4—C5—H5 | 119.6 | H12A—C12—H12C | 109.5 |
N1—C6—C5 | 121.2 (3) | H12B—C12—H12C | 109.5 |
Cl1i—Pd1—N1—C2 | 63.4 (2) | C3—C4—C5—C6 | 0.7 (4) |
Cl1—Pd1—N1—C2 | −116.6 (2) | B7—C4—C5—C6 | −179.8 (3) |
Cl1i—Pd1—N1—C6 | −114.6 (2) | C2—N1—C6—C5 | −1.3 (5) |
Cl1—Pd1—N1—C6 | 65.4 (2) | Pd1—N1—C6—C5 | 176.8 (2) |
C6—N1—C2—C3 | −1.3 (5) | C4—C5—C6—N1 | 1.6 (5) |
Pd1—N1—C2—C3 | −179.3 (2) | C5—C4—B7—O8 | −156.2 (3) |
N1—C2—C3—C4 | 3.7 (5) | C3—C4—B7—O8 | 23.2 (5) |
C2—C3—C4—C5 | −3.3 (5) | C5—C4—B7—O9 | 24.3 (5) |
C2—C3—C4—B7 | 177.3 (3) | C3—C4—B7—O9 | −156.3 (3) |
Symmetry code: (i) −x, −y, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O8—H8···O10ii | 0.84 | 1.94 | 2.750 (3) | 163 |
O9—H9···O10 | 0.84 | 1.94 | 2.745 (3) | 160 |
C5—H5···O10 | 0.95 | 2.51 | 3.253 (3) | 135 |
C12—H12A···O8iii | 0.98 | 2.54 | 3.506 (4) | 169 |
C12—H12B···O9iv | 0.98 | 2.53 | 3.372 (4) | 144 |
Symmetry codes: (ii) x+1, y, z; (iii) −x+1, −y+1, −z+1; (iv) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | [PdCl2(C5H6BNO2)2]·2C2H6OS |
Mr | 579.39 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 150 |
a, b, c (Å) | 6.2629 (4), 8.1515 (5), 11.7761 (7) |
α, β, γ (°) | 80.687 (3), 82.248 (3), 77.456 (3) |
V (Å3) | 576.00 (6) |
Z | 1 |
Radiation type | Cu Kα |
µ (mm−1) | 10.62 |
Crystal size (mm) | 0.12 × 0.09 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART 6000 diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2004) |
Tmin, Tmax | 0.252, 0.428 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6942, 2135, 2031 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.618 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.082, 1.07 |
No. of reflections | 2135 |
No. of parameters | 136 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.68, −0.87 |
Computer programs: SMART (Bruker, 2003), SAINT (Bruker, 2003), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and Materials Studio (Accelrys, 2002), UdMX (Maris, 2004) and publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
O8—H8···O10i | 0.84 | 1.94 | 2.750 (3) | 163 |
O9—H9···O10 | 0.84 | 1.94 | 2.745 (3) | 160 |
C5—H5···O10 | 0.95 | 2.51 | 3.253 (3) | 135 |
C12—H12A···O8ii | 0.98 | 2.54 | 3.506 (4) | 169 |
C12—H12B···O9iii | 0.98 | 2.53 | 3.372 (4) | 144 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, −y+1, −z+1; (iii) x−1, y, z. |
Acknowledgements
We are grateful to the Natural Sciences and Engineering Research Council of Canada, the Ministère de l'Éducation du Québec, the Canada Foundation for Innovation, the Canada Research Chairs Program and the Université de Montréal for financial support.
References
Accelrys (2002). Materials Studio. Accelrys Inc., San Diego, California, USA. Google Scholar
Bruker (2003). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Maris, T. (2004). UdMX. University of Montréal, Montréal, QC, Canada. Google Scholar
Qin, Z., Jennings, M. C., Puddephatt, R. J. & Muir, K. W. (2002). Inorg. Chem. 41, 5174–5186. Web of Science CSD CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2004). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Viossat, B., Dung, N.-H. & Robert, F. (1993). Acta Cryst. C49, 84–85. CSD CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
Zordan, F. & Brammer, L. (2006). Cryst. Growth Des. 6, 1374–1379. Web of Science CSD CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound was isolated as an air-stable yellow-orange solid. Each PdII centre lies on a crystallographic inversion centre in a square-planar environment. The chloride and (pyridin-4-yl)boronic acid ligands adopt a trans arrangement due to the molecular symmetry Ci; N—Pd—Cl angles are about 90° (Fig. 1). The bond lengths expected for Pd—N and Pd—Cl (2.023 (2) Å and 2.2977 (7) Å, respectively) are similar to those observed in trans-dichloridobis(pyridine)PdII (Viossat et al., 1993).
In the crystal structure, the solvent molecules of DMSO are linked by the boronic acid group of the complexes via O—H···O hydrogen bonds (average distance 2.747 (3) Å) to form tapes (Fig. 2, Table 2). The tapes are further connected to create layers by C—H···π interactions (distance C11—H11···Cg1 = 3.815 (4) Å where Cg1 is the centroid of the pyridine ring). Cohesion of the crystals also arises in part from C—H···O interactions involving one methyl moiety of DMSO molecules and oxygen atoms of the boronic acid unit (average C···O distance 3.439 (4) Å).