metal-organic compounds
Diaquabis(4-carboxy-2-ethyl-1H-imidazole-5-carboxylato-κ2N3,O4)zinc N,N-dimethylformamide disolvate
aCollege of Chemistry and Chemical Engineering, Pingdingshan University, Pingdingshan 467000, People's Republic of China.
*Correspondence e-mail: haochengjun2008@163.com
In the title compound, [Zn(C7H7N2O4)2(H2O)2]·2C3H7NO, the ZnII ion, which lies on a center of inversion, is coordinated by two O atoms and two N atoms from two 4-carboxy-2-ethyl-1H-imidazole-5-carboxylato anions and two water O atoms in an octahedral environment, Each 4-carboxy-2-ethyl-1H-imidazole-5-carboxylato ligand adopts a bidentate chelating mode to the ZnII ion, forming two five-membered metalla rings. In the crystal, a two-dimensional framework parallel to (010) is formed by N—H⋯O and O—H⋯O hydrogen bonds.
Related literature
For the properties of complexes derived from imidazole-4,5-dicarboxylic acid, see: Maji et al. (2005); Yang & Zhang (2006). For our previous work based on 2-ethyl-4,5-imidazoledicarboxylate, see: Tian et al. (2010).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811012992/nk2096sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811012992/nk2096Isup2.hkl
A mixture of ZnNO3 (0.5 mmol, 0.06 g) and 2-ethyl-1H-imidazole-4,5-dicarboxylic acid(0.5 mmol, 0.95 g) dissolved in 10 ml C3H7NO, and then the solution was sealed in an autoclave equipped with a Teflon liner (25 ml) and then heated at 373k for 3 days. After slowly cooling down to room temperature, colourless crystals of the title compound were obtained directly from the solution.
Carbon and nitrogen bound H atoms were placed at calculated positions and were treated as riding on the parent C or N atoms with C—H = 0.93 Å, N—H = 0.86 Å, and with Uiso(H) = 1.2 Ueq(C, N). H atoms of the water molecule were located in a difference Fourier map and refined as riding with an O—H distance restraint of 0.84 (1) Å, with Uiso(H) = 1.5 Ueq. The H···H distances within the water molecules were restraint to 1.39 (1) Å. Carboxyl H atoms were located in a difference Fourier map and refined as riding with an O—H distance constraint of 0.85 Å, with Uiso(H) = 1.2 Ueq.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The structure of the title compound, with 30% probability displacement ellipsoids (H atoms are omitted for clarity). [Symmetry codes: (i) -x + 2, -y, -z + 1.] |
[Zn(C7H7N2O4)2(H2O)2]·2C3H7NO | F(000) = 640 |
Mr = 613.89 | Dx = 1.560 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5837 reflections |
a = 7.2817 (8) Å | θ = 2.8–27.9° |
b = 20.660 (2) Å | µ = 1.01 mm−1 |
c = 9.3623 (9) Å | T = 296 K |
β = 111.846 (7)° | Block, colourless |
V = 1307.3 (2) Å3 | 0.53 × 0.41 × 0.31 mm |
Z = 2 |
Bruker APEXII area-detector diffractometer | 2619 independent reflections |
Radiation source: fine-focus sealed tube | 2083 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.037 |
ϕ and ω scan | θmax = 26.2°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→8 |
Tmin = 0.616, Tmax = 0.744 | k = −25→25 |
10742 measured reflections | l = −11→11 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.086 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0387P)2 + 0.6624P] where P = (Fo2 + 2Fc2)/3 |
2619 reflections | (Δ/σ)max < 0.001 |
181 parameters | Δρmax = 0.22 e Å−3 |
3 restraints | Δρmin = −0.36 e Å−3 |
[Zn(C7H7N2O4)2(H2O)2]·2C3H7NO | V = 1307.3 (2) Å3 |
Mr = 613.89 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.2817 (8) Å | µ = 1.01 mm−1 |
b = 20.660 (2) Å | T = 296 K |
c = 9.3623 (9) Å | 0.53 × 0.41 × 0.31 mm |
β = 111.846 (7)° |
Bruker APEXII area-detector diffractometer | 2619 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2083 reflections with I > 2σ(I) |
Tmin = 0.616, Tmax = 0.744 | Rint = 0.037 |
10742 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 3 restraints |
wR(F2) = 0.086 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.22 e Å−3 |
2619 reflections | Δρmin = −0.36 e Å−3 |
181 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 1.0000 | 0.0000 | 1.0000 | 0.02973 (13) | |
O1 | 0.6355 (3) | −0.00930 (9) | 0.25342 (18) | 0.0414 (4) | |
O1W | 1.2808 (2) | 0.03585 (9) | 1.00911 (17) | 0.0383 (4) | |
H1W | 1.2982 | 0.0255 | 0.9272 | 0.057* | |
H2W | 1.3729 | 0.0197 | 1.0863 | 0.057* | |
O2 | 0.7948 (3) | −0.09580 (9) | 0.38356 (18) | 0.0424 (4) | |
O3 | 0.9815 (3) | −0.12960 (8) | 0.65214 (18) | 0.0392 (4) | |
H3 | 0.9214 | −0.1176 | 0.5595 | 0.047* | |
O4 | 1.0464 (2) | −0.08767 (8) | 0.88405 (17) | 0.0358 (4) | |
N1 | 0.8675 (3) | 0.02603 (9) | 0.77101 (19) | 0.0263 (4) | |
N2 | 0.7049 (3) | 0.05738 (9) | 0.5331 (2) | 0.0287 (4) | |
H2 | 0.6373 | 0.0814 | 0.4565 | 0.034* | |
C1 | 0.7687 (3) | 0.07446 (11) | 0.6824 (2) | 0.0280 (5) | |
C2 | 0.8660 (3) | −0.02367 (11) | 0.6730 (2) | 0.0247 (4) | |
C3 | 0.7660 (3) | −0.00476 (11) | 0.5237 (2) | 0.0274 (5) | |
C4 | 0.9705 (3) | −0.08386 (11) | 0.7418 (2) | 0.0292 (5) | |
C5 | 0.7267 (3) | −0.03848 (12) | 0.3751 (2) | 0.0326 (5) | |
C6 | 0.7387 (4) | 0.14021 (12) | 0.7351 (3) | 0.0407 (6) | |
H6A | 0.7823 | 0.1403 | 0.8464 | 0.049* | |
H6B | 0.5986 | 0.1504 | 0.6934 | 0.049* | |
C7 | 0.8514 (5) | 0.19225 (14) | 0.6854 (4) | 0.0594 (8) | |
H7A | 0.9895 | 0.1815 | 0.7230 | 0.089* | |
H7B | 0.8342 | 0.2333 | 0.7269 | 0.089* | |
H7C | 0.8013 | 0.1947 | 0.5751 | 0.089* | |
O5 | 0.4712 (3) | 0.14244 (10) | 0.32830 (19) | 0.0504 (5) | |
N3 | 0.4143 (3) | 0.18961 (10) | 0.0978 (2) | 0.0412 (5) | |
C8 | 0.5131 (4) | 0.15203 (13) | 0.2144 (3) | 0.0428 (6) | |
H8A | 0.6239 | 0.1309 | 0.2104 | 0.051* | |
C9 | 0.4683 (6) | 0.1927 (2) | −0.0361 (4) | 0.0754 (10) | |
H9A | 0.5986 | 0.1751 | −0.0109 | 0.113* | |
H9B | 0.4665 | 0.2369 | −0.0679 | 0.113* | |
H9C | 0.3755 | 0.1680 | −0.1182 | 0.113* | |
C10 | 0.2338 (5) | 0.22132 (16) | 0.0909 (4) | 0.0654 (9) | |
H10A | 0.2220 | 0.2184 | 0.1895 | 0.098* | |
H10B | 0.1223 | 0.2005 | 0.0147 | 0.098* | |
H10C | 0.2374 | 0.2660 | 0.0640 | 0.098* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0328 (2) | 0.0381 (2) | 0.01527 (18) | 0.00315 (17) | 0.00554 (15) | 0.00143 (15) |
O1 | 0.0407 (10) | 0.0605 (12) | 0.0179 (8) | 0.0054 (8) | 0.0051 (8) | 0.0017 (8) |
O1W | 0.0322 (9) | 0.0579 (12) | 0.0227 (8) | −0.0008 (8) | 0.0078 (7) | 0.0013 (8) |
O2 | 0.0510 (11) | 0.0429 (11) | 0.0271 (9) | 0.0046 (9) | 0.0075 (8) | −0.0077 (7) |
O3 | 0.0489 (10) | 0.0363 (9) | 0.0271 (9) | 0.0113 (8) | 0.0079 (8) | −0.0007 (7) |
O4 | 0.0433 (10) | 0.0374 (9) | 0.0211 (8) | 0.0090 (8) | 0.0055 (7) | 0.0040 (7) |
N1 | 0.0285 (10) | 0.0322 (10) | 0.0167 (9) | 0.0036 (8) | 0.0065 (8) | 0.0015 (7) |
N2 | 0.0295 (10) | 0.0336 (11) | 0.0196 (9) | 0.0060 (8) | 0.0053 (8) | 0.0066 (8) |
C1 | 0.0283 (12) | 0.0331 (12) | 0.0218 (11) | 0.0025 (9) | 0.0082 (10) | 0.0026 (9) |
C2 | 0.0250 (11) | 0.0297 (11) | 0.0183 (10) | 0.0009 (9) | 0.0068 (9) | 0.0007 (8) |
C3 | 0.0251 (11) | 0.0359 (12) | 0.0204 (10) | −0.0016 (10) | 0.0075 (9) | 0.0005 (9) |
C4 | 0.0292 (12) | 0.0323 (12) | 0.0252 (12) | 0.0008 (10) | 0.0092 (10) | −0.0001 (9) |
C5 | 0.0278 (12) | 0.0450 (15) | 0.0230 (12) | −0.0046 (11) | 0.0072 (10) | −0.0024 (10) |
C6 | 0.0472 (15) | 0.0407 (15) | 0.0313 (13) | 0.0133 (12) | 0.0114 (12) | −0.0014 (11) |
C7 | 0.067 (2) | 0.0383 (16) | 0.064 (2) | −0.0033 (15) | 0.0142 (17) | −0.0061 (14) |
O5 | 0.0557 (12) | 0.0593 (13) | 0.0310 (10) | 0.0156 (10) | 0.0101 (9) | 0.0128 (8) |
N3 | 0.0462 (12) | 0.0405 (12) | 0.0304 (11) | 0.0003 (10) | 0.0069 (10) | 0.0045 (9) |
C8 | 0.0419 (15) | 0.0422 (15) | 0.0390 (15) | 0.0083 (12) | 0.0090 (12) | 0.0028 (12) |
C9 | 0.091 (3) | 0.095 (3) | 0.0440 (18) | −0.008 (2) | 0.0296 (19) | 0.0128 (17) |
C10 | 0.066 (2) | 0.062 (2) | 0.0517 (18) | 0.0231 (17) | 0.0028 (16) | 0.0102 (15) |
Zn1—N1 | 2.0680 (17) | C2—C4 | 1.475 (3) |
Zn1—N1i | 2.0680 (17) | C3—C5 | 1.485 (3) |
Zn1—O1Wi | 2.1464 (16) | C6—C7 | 1.526 (4) |
Zn1—O1W | 2.1464 (16) | C6—H6A | 0.9700 |
Zn1—O4 | 2.2013 (16) | C6—H6B | 0.9700 |
Zn1—O4i | 2.2013 (16) | C7—H7A | 0.9600 |
O1—C5 | 1.241 (3) | C7—H7B | 0.9600 |
O1W—H1W | 0.8501 | C7—H7C | 0.9600 |
O1W—H2W | 0.8500 | O5—C8 | 1.230 (3) |
O2—C5 | 1.275 (3) | N3—C8 | 1.314 (3) |
O3—C4 | 1.286 (3) | N3—C10 | 1.448 (4) |
O3—H3 | 0.8500 | N3—C9 | 1.448 (3) |
O4—C4 | 1.240 (3) | C8—H8A | 0.9300 |
N1—C1 | 1.328 (3) | C9—H9A | 0.9600 |
N1—C2 | 1.375 (3) | C9—H9B | 0.9600 |
N2—C1 | 1.346 (3) | C9—H9C | 0.9600 |
N2—C3 | 1.372 (3) | C10—H10A | 0.9600 |
N2—H2 | 0.8600 | C10—H10B | 0.9600 |
C1—C6 | 1.489 (3) | C10—H10C | 0.9600 |
C2—C3 | 1.371 (3) | ||
N1—Zn1—N1i | 180.0 | O4—C4—C2 | 118.3 (2) |
N1—Zn1—O1Wi | 88.77 (7) | O3—C4—C2 | 118.78 (19) |
N1i—Zn1—O1Wi | 91.23 (6) | O1—C5—O2 | 124.8 (2) |
N1—Zn1—O1W | 91.23 (6) | O1—C5—C3 | 118.9 (2) |
N1i—Zn1—O1W | 88.77 (7) | O2—C5—C3 | 116.3 (2) |
O1Wi—Zn1—O1W | 180.0 | C1—C6—C7 | 112.3 (2) |
N1—Zn1—O4 | 78.50 (6) | C1—C6—H6A | 109.1 |
N1i—Zn1—O4 | 101.50 (6) | C7—C6—H6A | 109.1 |
O1Wi—Zn1—O4 | 90.87 (6) | C1—C6—H6B | 109.1 |
O1W—Zn1—O4 | 89.13 (6) | C7—C6—H6B | 109.1 |
N1—Zn1—O4i | 101.50 (6) | H6A—C6—H6B | 107.9 |
N1i—Zn1—O4i | 78.50 (6) | C6—C7—H7A | 109.5 |
O1Wi—Zn1—O4i | 89.13 (6) | C6—C7—H7B | 109.5 |
O1W—Zn1—O4i | 90.87 (6) | H7A—C7—H7B | 109.5 |
O4—Zn1—O4i | 180.000 (1) | C6—C7—H7C | 109.5 |
Zn1—O1W—H1W | 109.7 | H7A—C7—H7C | 109.5 |
Zn1—O1W—H2W | 109.7 | H7B—C7—H7C | 109.5 |
H1W—O1W—H2W | 109.5 | C8—N3—C10 | 120.8 (2) |
C4—O3—H3 | 108.6 | C8—N3—C9 | 120.2 (3) |
C4—O4—Zn1 | 112.88 (14) | C10—N3—C9 | 118.4 (2) |
C1—N1—C2 | 106.13 (17) | O5—C8—N3 | 125.4 (2) |
C1—N1—Zn1 | 141.17 (15) | O5—C8—H8A | 117.3 |
C2—N1—Zn1 | 112.51 (14) | N3—C8—H8A | 117.3 |
C1—N2—C3 | 108.49 (18) | N3—C9—H9A | 109.5 |
C1—N2—H2 | 125.8 | N3—C9—H9B | 109.5 |
C3—N2—H2 | 125.8 | H9A—C9—H9B | 109.5 |
N1—C1—N2 | 110.41 (19) | N3—C9—H9C | 109.5 |
N1—C1—C6 | 126.4 (2) | H9A—C9—H9C | 109.5 |
N2—C1—C6 | 123.2 (2) | H9B—C9—H9C | 109.5 |
C3—C2—N1 | 109.71 (19) | N3—C10—H10A | 109.5 |
C3—C2—C4 | 132.7 (2) | N3—C10—H10B | 109.5 |
N1—C2—C4 | 117.60 (18) | H10A—C10—H10B | 109.5 |
C2—C3—N2 | 105.25 (18) | N3—C10—H10C | 109.5 |
C2—C3—C5 | 131.7 (2) | H10A—C10—H10C | 109.5 |
N2—C3—C5 | 123.0 (2) | H10B—C10—H10C | 109.5 |
O4—C4—O3 | 122.9 (2) |
Symmetry code: (i) −x+2, −y, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W···O1ii | 0.85 | 1.95 | 2.798 (2) | 173 |
O1W—H2W···O1iii | 0.85 | 2.06 | 2.894 (2) | 168 |
O3—H3···O2 | 0.85 | 1.62 | 2.473 (2) | 177 |
N2—H2···O5 | 0.86 | 1.85 | 2.689 (2) | 166 |
Symmetry codes: (ii) −x+2, −y, −z+1; (iii) x+1, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C7H7N2O4)2(H2O)2]·2C3H7NO |
Mr | 613.89 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 7.2817 (8), 20.660 (2), 9.3623 (9) |
β (°) | 111.846 (7) |
V (Å3) | 1307.3 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.01 |
Crystal size (mm) | 0.53 × 0.41 × 0.31 |
Data collection | |
Diffractometer | Bruker APEXII area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.616, 0.744 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10742, 2619, 2083 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.621 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.086, 1.02 |
No. of reflections | 2619 |
No. of parameters | 181 |
No. of restraints | 3 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.36 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W···O1i | 0.85 | 1.95 | 2.798 (2) | 173 |
O1W—H2W···O1ii | 0.85 | 2.06 | 2.894 (2) | 168 |
O3—H3···O2 | 0.85 | 1.62 | 2.473 (2) | 177 |
N2—H2···O5 | 0.86 | 1.85 | 2.689 (2) | 166 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) x+1, y, z+1. |
Acknowledgements
The authors acknowledge Pingdingshan University for support of this work.
References
Bruker (2007). APEX2 and SMART. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Maji, T. K., Mostafa, G., Chang, H. C. & Kitagawa, S. (2005). Chem. Commun. pp. 2436–2438. Web of Science CSD CrossRef Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Tian, D. M., Li, Y. F. & Hao, C. J. (2010). Z. Kristallogr. New Cryst. Struct. 225, 403–404 CAS Google Scholar
Yang, R. Q. & Zhang, X. M. (2006). Inorg. Chem. 45, 4801–4810 Web of Science PubMed Google Scholar
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Imidazole-4,5-dicarboxylic acid (H3Imda) can be deprotonated to generate three types of anions, namely Imda3-, HImda2- and H2Imda-and react with metal ions to form fascinating structures with different structures and useful properties (Maji et al., 2005; Yang et al., 2006). In previous studies, we have obtained a CaIIcomplex based on 2-ethyl-1H-imidazole-4,5-dicarboxylate under hydrothermal conditions (Tian et al., 2010). In this paper, we report a new ZnII complex.
The title compound, [Zn(C7H7N2O4)2 (H2O)2].2C3H7NO, as shown in Fig. 1, is a discrete complex, consisting of one ZnII ion, two mono-deprotonated 2-ethyl-1H-imidazole-4,5-dicarboxy anions and two water molecules. Each ZnII ion is six-coordinated in an octahedral coordination environment, formed by two oxygen atoms(O4,O4i) and two nitrogen atoms (N1,N1i)from two 2-ethyl-4,5-imidazoledicarboxylate ligands in the equatorial plane and two water molecules in the apical sites (symmetry codes: -x + 2, -y, -z + 1).the Zn—O bond distances are 2.1461 (18) Å and 2.2013 (18) Å, and Zn—N bond distances are 2.0683 (19) Å. Each 2-ethyl-4,5-imidazoledicarboxylate ligand chelates the ZnII ion in a bidentate coordination mode through its imidazole nitrogen atom and carboxylate oxygen atom. Extensive hydrogen-bonding interactions (N—H···O and O—H···O), generate a two-dimensional structure.