organic compounds
1-(Thiophen-2-yl)ethanone thiosemicarbazone
aDépartement de Chimie, Faculté des Sciences et Techniques, Université Cheikh Anta Diop, Dakar, Senegal, and bLaboratoire de Cristallochimie, Ecole de Physique, 24 Quai Ernest-Ansermet, 1211 Gebeve, Switzerland
*Correspondence e-mail: mlgayeastou@yahoo.fr
The title compound, C7H9N3S2, crystallizes with two unique molecules in the both present as thiosemicarbazide tautomers. The molecules differ principally in the dihedral angles between the thiophene ring planes and the planes through the non-H atoms of the hydrazinecarbothioamide units, viz. 9.80 (8)° for one molecule and 19.37 (7)° for the other. The hydrazinecarbothioamide units are reasonably planar, with r.m.s. deviations of 0.001Å for each of the molecules. In the crystal, N—H⋯S hydrogen bonds link like molecules into R22(8) inversion dimers. A three-dimensional network structure is generated by additional N—H⋯S hydrogen bonds and weak C—H⋯S contacts between the unique molecules.
Related literature
For related structures, see: Avsar et al. (2003); Arslan et al. (2004); Kusaï et al. (2009). For graph-set motifs, see: Bernstein et al. (1995). For the weighting scheme, see: Prince (1982); Watkin (1994).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: IPDS (Stoe & Cie, 1996); cell IPDS; data reduction: X-RED (Stoe & Cie 1996); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: CAMERON (Watkin et al., 1996); software used to prepare material for publication: CRYSTALS.
Supporting information
10.1107/S1600536811011986/pb2061sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811011986/pb2061Isup2.hkl
2-Acetyl thiophene (1,2618 g, 10 mmol) was reacted with thiosemicarbazide (0.9114 g, 10 mmol) in CH3OH (50 ml) solution, to give the corresponding compound after one hour under reflux. After cooling to room temperature, a yellow solid was isolated and washed twice with diethyl ether. Yield: 79.5%. m.p. 142–146 °C. Anal. Calc. for C7H9N3S2 (%): C, 42.19; H, 4.55; N, 21.08. Found: C, 42.22; H, 4.53; N, 21.01. Selected IR data (cm-1, KBr pellet): 3450, 3250 (ν NH), 1630 (ν C=N), 1160 (ν C=S). 1H NMR (200 MHz, CD6Cl, δ, p.p.m.): 2.32 (s, 3H, –CH3); 7.42 (s, 2H, –NH2); 8.32 (s, 1H, –NH); 7.07–7.58 (m, 3H, C4H3S); 10.36 (s, 1H, SH);. 13C NMR (200 MHz, CD3Cl, δ, p.p.m.): 14.01 (–CH3); 68.09 (O—CH~2~); 70.12 (O– CH~2~); 127.12–143.152 (C4H3S); 145.30 (C=N); 178.02 (C=S). A CH3Cl solution of the title compound was mixed with ethanol (1/1). After several days, colorless block-shaped single crystals suitable for X-ray crystallographic analysis were obtained.
The H atoms were all located in a difference map, but those attached to carbon atoms were repositioned geometrically. The H atoms were initially refined with soft restraints on the bond lengths and angles to regularize their geometry (C—H in the range 0.93–0.98, N—H in the range 0.86–0.89 N—H to 0.86 O—H = 0.82 Å) and Uiso(H) (in the range 1.2–1.5 times Ueq of the parent atom), after which the positions were refined with riding constraints.
Data collection: IPDS (Stoe & Cie, 1996); cell
IPDS (Stoe & Cie, 1996); data reduction: X-RED (Stoe & Cie 1996); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: CAMERON (Watkin et al., 1996); software used to prepare material for publication: CRYSTALS (Betteridge et al., 2003).C7H9N3S2 | Z = 4 |
Mr = 199.31 | F(000) = 416 |
Triclinic, P1 | Dx = 1.430 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.0037 (9) Å | Cell parameters from 0 reflections |
b = 9.7800 (9) Å | θ = 0–0° |
c = 12.1428 (12) Å | µ = 0.52 mm−1 |
α = 104.575 (8)° | T = 140 K |
β = 103.345 (8)° | Parallelepiped, yellow |
γ = 108.227 (8)° | 0.50 × 0.40 × 0.30 mm |
V = 925.52 (18) Å3 |
Stoe IPDS diffractometer | Rint = 0.033 |
Graphite monochromator | θmax = 30.9°, θmin = 2.3° |
ω scans | h = −12→12 |
13175 measured reflections | k = −12→13 |
5386 independent reflections | l = −17→17 |
4634 reflections with I > 2σ(I) |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.034 | H-atom parameters constrained |
wR(F2) = 0.053 | Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 17.0 19.0 6.62 |
S = 1.00 | (Δ/σ)max = 0.001 |
5373 reflections | Δρmax = 0.40 e Å−3 |
217 parameters | Δρmin = −0.39 e Å−3 |
0 restraints |
C7H9N3S2 | γ = 108.227 (8)° |
Mr = 199.31 | V = 925.52 (18) Å3 |
Triclinic, P1 | Z = 4 |
a = 9.0037 (9) Å | Mo Kα radiation |
b = 9.7800 (9) Å | µ = 0.52 mm−1 |
c = 12.1428 (12) Å | T = 140 K |
α = 104.575 (8)° | 0.50 × 0.40 × 0.30 mm |
β = 103.345 (8)° |
Stoe IPDS diffractometer | 4634 reflections with I > 2σ(I) |
13175 measured reflections | Rint = 0.033 |
5386 independent reflections |
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.053 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.40 e Å−3 |
5373 reflections | Δρmin = −0.39 e Å−3 |
217 parameters |
Experimental. Reflections affected by the beam-stop were not included in the refinement. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.26295 (15) | 0.85450 (15) | 0.42449 (11) | 0.0287 | |
C2 | 0.23744 (17) | 0.93285 (17) | 0.51896 (12) | 0.0224 | |
S3 | 0.37191 (5) | 1.11020 (4) | 0.61614 (4) | 0.0264 | |
N4 | 0.09273 (14) | 0.86531 (14) | 0.53590 (11) | 0.0255 | |
N5 | −0.00908 (14) | 0.71581 (14) | 0.46373 (11) | 0.0234 | |
C6 | −0.13491 (16) | 0.65062 (17) | 0.49325 (12) | 0.0217 | |
C7 | −0.17662 (18) | 0.72896 (18) | 0.59706 (13) | 0.0276 | |
C8 | −0.23815 (16) | 0.49066 (17) | 0.41921 (13) | 0.0222 | |
S9 | −0.19349 (5) | 0.39888 (5) | 0.29754 (4) | 0.0286 | |
C10 | −0.35441 (19) | 0.22919 (18) | 0.26747 (15) | 0.0313 | |
C11 | −0.43840 (19) | 0.24169 (18) | 0.34678 (15) | 0.0295 | |
C12 | −0.37117 (18) | 0.39098 (17) | 0.43411 (14) | 0.0260 | |
N21 | −0.13026 (16) | 0.79416 (16) | 0.21760 (12) | 0.0317 | |
C22 | −0.07537 (17) | 0.87345 (17) | 0.15117 (12) | 0.0240 | |
S23 | −0.15386 (5) | 0.99727 (5) | 0.11278 (4) | 0.0283 | |
N24 | 0.05087 (15) | 0.85422 (14) | 0.11585 (11) | 0.0245 | |
N25 | 0.10126 (15) | 0.74112 (14) | 0.13786 (10) | 0.0233 | |
C26 | 0.22938 (17) | 0.73180 (16) | 0.11099 (12) | 0.0213 | |
C27 | 0.33339 (19) | 0.83708 (19) | 0.06322 (15) | 0.0311 | |
C28 | 0.27075 (17) | 0.60356 (16) | 0.12664 (12) | 0.0210 | |
S29 | 0.14366 (5) | 0.46442 (5) | 0.16514 (4) | 0.0294 | |
C30 | 0.2690 (2) | 0.36424 (19) | 0.15960 (14) | 0.0324 | |
C31 | 0.4021 (2) | 0.43291 (19) | 0.13032 (15) | 0.0314 | |
C32 | 0.40373 (19) | 0.57103 (18) | 0.11115 (14) | 0.0282 | |
H71 | −0.2700 | 0.6650 | 0.6064 | 0.0418* | |
H73 | −0.1962 | 0.8165 | 0.5899 | 0.0414* | |
H72 | −0.0819 | 0.7680 | 0.6714 | 0.0395* | |
H101 | −0.3781 | 0.1398 | 0.2028 | 0.0387* | |
H111 | −0.5275 | 0.1609 | 0.3456 | 0.0342* | |
H121 | −0.4131 | 0.4187 | 0.4973 | 0.0309* | |
H271 | 0.4474 | 0.8480 | 0.0869 | 0.0485* | |
H273 | 0.3333 | 0.9390 | 0.0904 | 0.0470* | |
H272 | 0.2894 | 0.8001 | −0.0250 | 0.0484* | |
H301 | 0.2423 | 0.2727 | 0.1735 | 0.0391* | |
H311 | 0.4849 | 0.3958 | 0.1244 | 0.0388* | |
H321 | 0.4848 | 0.6364 | 0.0904 | 0.0338* | |
H41 | 0.0815 | 0.9026 | 0.6019 | 0.0329* | |
H241 | 0.0787 | 0.8967 | 0.0667 | 0.0309* | |
H12 | 0.1936 | 0.7641 | 0.3821 | 0.0374* | |
H211 | −0.0889 | 0.7344 | 0.2366 | 0.0407* | |
H11 | 0.3561 | 0.8847 | 0.4174 | 0.0369* | |
H212 | −0.2011 | 0.8090 | 0.2464 | 0.0402* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0205 (6) | 0.0368 (7) | 0.0220 (6) | 0.0057 (5) | 0.0103 (5) | 0.0038 (5) |
C2 | 0.0188 (6) | 0.0292 (7) | 0.0221 (6) | 0.0107 (5) | 0.0084 (5) | 0.0108 (6) |
S3 | 0.02314 (17) | 0.02531 (17) | 0.03061 (19) | 0.00811 (14) | 0.01403 (15) | 0.00688 (15) |
N4 | 0.0206 (6) | 0.0279 (6) | 0.0274 (6) | 0.0080 (5) | 0.0136 (5) | 0.0058 (5) |
N5 | 0.0191 (5) | 0.0264 (6) | 0.0245 (6) | 0.0089 (5) | 0.0085 (5) | 0.0075 (5) |
C6 | 0.0174 (6) | 0.0298 (7) | 0.0221 (6) | 0.0116 (5) | 0.0084 (5) | 0.0114 (6) |
C7 | 0.0236 (7) | 0.0346 (8) | 0.0257 (7) | 0.0107 (6) | 0.0129 (6) | 0.0086 (6) |
C8 | 0.0185 (6) | 0.0293 (7) | 0.0238 (7) | 0.0125 (5) | 0.0093 (5) | 0.0115 (6) |
S9 | 0.02536 (18) | 0.03112 (19) | 0.03085 (19) | 0.01106 (15) | 0.01547 (15) | 0.00804 (15) |
C10 | 0.0276 (7) | 0.0267 (7) | 0.0396 (9) | 0.0120 (6) | 0.0135 (7) | 0.0079 (7) |
C11 | 0.0253 (7) | 0.0270 (7) | 0.0417 (9) | 0.0122 (6) | 0.0152 (7) | 0.0148 (7) |
C12 | 0.0225 (7) | 0.0309 (7) | 0.0327 (8) | 0.0136 (6) | 0.0150 (6) | 0.0152 (6) |
N21 | 0.0333 (7) | 0.0477 (8) | 0.0356 (7) | 0.0287 (6) | 0.0220 (6) | 0.0234 (6) |
C22 | 0.0235 (7) | 0.0300 (7) | 0.0188 (6) | 0.0144 (6) | 0.0068 (5) | 0.0044 (5) |
S23 | 0.03127 (19) | 0.0329 (2) | 0.03109 (19) | 0.02194 (16) | 0.01527 (16) | 0.01188 (16) |
N24 | 0.0271 (6) | 0.0323 (6) | 0.0242 (6) | 0.0197 (5) | 0.0130 (5) | 0.0119 (5) |
N25 | 0.0249 (6) | 0.0293 (6) | 0.0210 (6) | 0.0165 (5) | 0.0091 (5) | 0.0088 (5) |
C26 | 0.0201 (6) | 0.0269 (7) | 0.0170 (6) | 0.0114 (5) | 0.0052 (5) | 0.0059 (5) |
C27 | 0.0293 (8) | 0.0347 (8) | 0.0405 (9) | 0.0175 (7) | 0.0173 (7) | 0.0198 (7) |
C28 | 0.0209 (6) | 0.0259 (7) | 0.0173 (6) | 0.0109 (5) | 0.0071 (5) | 0.0066 (5) |
S29 | 0.03128 (19) | 0.0318 (2) | 0.0328 (2) | 0.01480 (16) | 0.01744 (16) | 0.01445 (16) |
C30 | 0.0462 (9) | 0.0327 (8) | 0.0278 (7) | 0.0228 (7) | 0.0162 (7) | 0.0134 (6) |
C31 | 0.0376 (8) | 0.0386 (9) | 0.0317 (8) | 0.0266 (7) | 0.0163 (7) | 0.0154 (7) |
C32 | 0.0264 (7) | 0.0351 (8) | 0.0305 (8) | 0.0177 (6) | 0.0134 (6) | 0.0128 (6) |
N1—C2 | 1.3210 (17) | N21—C22 | 1.3249 (19) |
N1—H12 | 0.845 | N21—H211 | 0.836 |
N1—H11 | 0.831 | N21—H212 | 0.828 |
C2—S3 | 1.6921 (15) | C22—S23 | 1.6884 (15) |
C2—N4 | 1.3528 (17) | C22—N24 | 1.3525 (17) |
N4—N5 | 1.3754 (17) | N24—N25 | 1.3811 (16) |
N4—H41 | 0.836 | N24—H241 | 0.849 |
N5—C6 | 1.2920 (17) | N25—C26 | 1.2923 (17) |
C6—C7 | 1.4931 (19) | C26—C27 | 1.491 (2) |
C6—C8 | 1.455 (2) | C26—C28 | 1.4586 (19) |
C7—H71 | 0.928 | C27—H271 | 0.963 |
C7—H73 | 0.947 | C27—H273 | 0.969 |
C7—H72 | 0.978 | C27—H272 | 0.977 |
C8—S9 | 1.7270 (14) | C28—S29 | 1.7243 (14) |
C8—C12 | 1.3696 (19) | C28—C32 | 1.3719 (18) |
S9—C10 | 1.7127 (16) | S29—C30 | 1.7122 (16) |
C10—C11 | 1.360 (2) | C30—C31 | 1.351 (2) |
C10—H101 | 0.941 | C30—H301 | 0.921 |
C11—C12 | 1.412 (2) | C31—C32 | 1.424 (2) |
C11—H111 | 0.927 | C31—H311 | 0.935 |
C12—H121 | 0.948 | C32—H321 | 0.938 |
C2—N1—H12 | 119.3 | C22—N21—H211 | 121.3 |
C2—N1—H11 | 119.5 | C22—N21—H212 | 120.1 |
H12—N1—H11 | 119.4 | H211—N21—H212 | 118.3 |
N1—C2—S3 | 124.09 (11) | N21—C22—S23 | 122.70 (11) |
N1—C2—N4 | 116.62 (13) | N21—C22—N24 | 117.28 (13) |
S3—C2—N4 | 119.28 (10) | S23—C22—N24 | 120.01 (11) |
C2—N4—N5 | 119.09 (12) | C22—N24—N25 | 118.70 (12) |
C2—N4—H41 | 118.7 | C22—N24—H241 | 117.3 |
N5—N4—H41 | 119.2 | N25—N24—H241 | 122.2 |
N4—N5—C6 | 116.53 (12) | N24—N25—C26 | 117.62 (12) |
N5—C6—C7 | 124.02 (13) | N25—C26—C27 | 125.81 (13) |
N5—C6—C8 | 116.11 (12) | N25—C26—C28 | 115.93 (13) |
C7—C6—C8 | 119.87 (12) | C27—C26—C28 | 118.24 (12) |
C6—C7—H71 | 112.8 | C26—C27—H271 | 112.9 |
C6—C7—H73 | 112.7 | C26—C27—H273 | 111.6 |
H71—C7—H73 | 107.0 | H271—C27—H273 | 107.4 |
C6—C7—H72 | 109.4 | C26—C27—H272 | 110.7 |
H71—C7—H72 | 109.4 | H271—C27—H272 | 107.9 |
H73—C7—H72 | 105.1 | H273—C27—H272 | 106.0 |
C6—C8—S9 | 120.53 (10) | C26—C28—S29 | 121.16 (10) |
C6—C8—C12 | 128.75 (13) | C26—C28—C32 | 128.13 (13) |
S9—C8—C12 | 110.66 (11) | S29—C28—C32 | 110.68 (11) |
C8—S9—C10 | 91.72 (8) | C28—S29—C30 | 91.80 (8) |
S9—C10—C11 | 112.09 (12) | S29—C30—C31 | 112.44 (12) |
S9—C10—H101 | 121.9 | S29—C30—H301 | 121.1 |
C11—C10—H101 | 126.1 | C31—C30—H301 | 126.4 |
C10—C11—C12 | 112.29 (14) | C30—C31—C32 | 112.12 (14) |
C10—C11—H111 | 124.1 | C30—C31—H311 | 124.5 |
C12—C11—H111 | 123.6 | C32—C31—H311 | 123.4 |
C11—C12—C8 | 113.24 (13) | C31—C32—C28 | 112.97 (14) |
C11—C12—H121 | 123.2 | C31—C32—H321 | 126.0 |
C8—C12—H121 | 123.5 | C28—C32—H321 | 121.0 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H11···S3i | 0.83 | 2.56 | 3.3609 (16) | 162 |
N21—H212···S3ii | 0.83 | 2.66 | 3.4691 (16) | 167 |
N24—H241···S23iii | 0.85 | 2.77 | 3.6128 (14) | 174 |
C7—H72···S23ii | 0.98 | 2.83 | 3.7236 (16) | 153 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x, −y+2, −z+1; (iii) −x, −y+2, −z. |
Experimental details
Crystal data | |
Chemical formula | C7H9N3S2 |
Mr | 199.31 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 140 |
a, b, c (Å) | 9.0037 (9), 9.7800 (9), 12.1428 (12) |
α, β, γ (°) | 104.575 (8), 103.345 (8), 108.227 (8) |
V (Å3) | 925.52 (18) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.52 |
Crystal size (mm) | 0.50 × 0.40 × 0.30 |
Data collection | |
Diffractometer | Stoe IPDS diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13175, 5386, 4634 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.723 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.053, 1.00 |
No. of reflections | 5373 |
No. of parameters | 217 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.40, −0.39 |
Computer programs: IPDS (Stoe & Cie, 1996), X-RED (Stoe & Cie 1996), SUPERFLIP (Palatinus & Chapuis, 2007), CRYSTALS (Betteridge et al., 2003), CAMERON (Watkin et al., 1996).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H11···S3i | 0.83 | 2.56 | 3.3609 (16) | 162 |
N21—H212···S3ii | 0.83 | 2.66 | 3.4691 (16) | 167 |
N24—H241···S23iii | 0.85 | 2.77 | 3.6128 (14) | 174 |
C7—H72···S23ii | 0.98 | 2.83 | 3.7236 (16) | 153 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x, −y+2, −z+1; (iii) −x, −y+2, −z. |
Acknowledgements
The authors thank the Agence Universitaire de la Francophonie for financial support (AUF-PSCI No. 6314PS804).
References
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NMR analysis of the title compound, (C7H9N3S2)2, (see experimental) shows that two forms are present in solution with the thiosemicarbazide moiety being partially transformed into the thioenolsemicarbazide. The X-ray structure determination reveals that the compound crystallizes in the triclinic space group P-1 with two molecules in the asymmetric unit, both of which are present as the thiosemicarbazide tautomer. The molecular geometry is illustrated in Fig. 1. The C—S bond lengths 1.6921 (15) Å and 1.6884 (15) Å confirm the double bond character and are comparable to those observed for 1-(biphenyl-4-carbonyl)-3-p-tolyl-thiourea [1.647 (3) Å for C—S, 1.217 (3) and 1.224 (3) Å] (Avsar et al., 2003). The C—N bond lengths are in the range [1.2920 (17) - 1.4122 (16) Å] which are shorter than normal single C—N bond lengths (Arslan et al., 2004).
Both unique molecules form inversion related dimers with R22(8) graph-set motifs (Bernstein et al., 1995) through N1—H11···S3 and N24—H241···S23 hydrogen bonds. Unique molecules are further linked by N21—H212···S3 bonds supported by a weak C7—H72···S3 contacts which generate additional centrosymmetric R22(11) motifs and a three dimensional network (Fig. 2).