organic compounds
4-{2-[2-(4-Chlorobenzylidene)hydrazinylidene]-3,6-dihydro-2H-1,3,4-thiadiazin-5-yl}-3-(4-methoxyphenyl)sydnone
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Studies in Chemistry, Mangalore University, Mangalagangotri, Mangalore 574 199, India
*Correspondence e-mail: hkfun@usm.my
The title compound, C19H15ClN6O3S, exists in trans and cis configurations with respect to the acyclic C=N bonds. The 3,6-dihydro-2H-1,3,4-thiadiazine ring adopts a half-boat conformation. The sydnone ring is approximately planar [maximum deviation = 0.013 (1) Å] and forms dihedral angles of 34.76 (4) and 48.67 (4)° with the benzene rings. An intramolecular C—H⋯O hydrogen bond stabilizes the molecular structure and forms an S(6) ring motif. In the crystal packing, intermolecular N—H⋯N hydrogen bonds link centrosymmetrically related molecules into dimers, generating R22(8) ring motifs. The dimers are then linked into a three-dimensional network by intermolecular C—H⋯O and C—H⋯Cl hydrogen bonds, and by C—H⋯π interactions. Further stabilization is provided by π–π interactions involving the sydnone rings, with centroid–centroid separations of 3.4198 (5) Å.
Related literature
For background to and the biological activity of et al. (1949); Hedge et al. (2008); Rai et al. (2008); Kalluraya et al. (2003). For ring conformations, see: Cremer & Pople (1975). For related structures, see: Fun et al. (2010, 2011). For bond-length data, see: Allen et al. (1987). For hydrogen-bond motifs, see: Bernstein et al. (1995). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
see: BakerExperimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811013900/rz2581sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811013900/rz2581Isup2.hkl
To a solution of 4-bromoacetyl-3-(4-anisyl)sydnone (0.01 mol) and N'-(4-chlorophenyl)methylidene]thiocarbonohydrazide (0.01 mol) in ethanol, a catalytic amount of anhydrous sodium acetate was added. The solution was stirred at room temperature for 2 to 3 h. The solid product that separated out was filtered and dried. It was then recrystallized from ethanol. Crystals suitable for X-ray analysis were obtained by slow evaporation of a DMF/ethanol solution (1:2 v/v).
H1 was located from the difference Fourier map and was fixed at its found position with Uiso(H) = 1.2 Ueq(N) [N–H = 0.88 Å]. The remaining H atoms were positioned geometrically and refined using a riding model with C–H = 0.93–0.97 Å and with Uiso(H) = 1.2 Ueq(C) or 1.5 Ueq(C) for methyl H atoms. A rotating group model was applied to the methyl group.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids and the atom-numbering scheme. The dashed line indicates the intramolecular bond. | |
Fig. 2. The crystal packing of the title compound, viewed along the a axis. H atoms not involved in the intermolecular interactions (dashed lines) have been omitted for clarity. |
C19H15ClN6O3S | F(000) = 912 |
Mr = 442.88 | Dx = 1.520 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9060 reflections |
a = 7.2322 (2) Å | θ = 3.5–37.6° |
b = 22.7311 (6) Å | µ = 0.34 mm−1 |
c = 12.9299 (3) Å | T = 100 K |
β = 114.426 (1)° | Block, red |
V = 1935.37 (9) Å3 | 0.56 × 0.33 × 0.19 mm |
Z = 4 |
Bruker SMART APEXII DUO CCD area-detector diffractometer | 10172 independent reflections |
Radiation source: fine-focus sealed tube | 8764 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
ϕ and ω scans | θmax = 37.6°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −12→12 |
Tmin = 0.832, Tmax = 0.937 | k = −37→38 |
38523 measured reflections | l = −22→22 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.031 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0455P)2 + 0.4618P] where P = (Fo2 + 2Fc2)/3 |
10172 reflections | (Δ/σ)max = 0.003 |
272 parameters | Δρmax = 0.61 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
C19H15ClN6O3S | V = 1935.37 (9) Å3 |
Mr = 442.88 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.2322 (2) Å | µ = 0.34 mm−1 |
b = 22.7311 (6) Å | T = 100 K |
c = 12.9299 (3) Å | 0.56 × 0.33 × 0.19 mm |
β = 114.426 (1)° |
Bruker SMART APEXII DUO CCD area-detector diffractometer | 10172 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 8764 reflections with I > 2σ(I) |
Tmin = 0.832, Tmax = 0.937 | Rint = 0.023 |
38523 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | 0 restraints |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.61 e Å−3 |
10172 reflections | Δρmin = −0.31 e Å−3 |
272 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | −0.20673 (3) | 0.599009 (8) | −0.296760 (19) | 0.02044 (4) | |
S1 | 0.27993 (3) | 0.865504 (7) | 0.177439 (15) | 0.01416 (4) | |
O1 | 0.86209 (8) | 0.99555 (2) | 0.58612 (4) | 0.01533 (9) | |
O2 | 0.69250 (10) | 0.90827 (3) | 0.56018 (5) | 0.01973 (10) | |
O3 | 0.62847 (10) | 1.19710 (2) | 0.08415 (5) | 0.01920 (10) | |
N1 | −0.02123 (10) | 0.86024 (3) | −0.03458 (5) | 0.01436 (10) | |
N2 | 0.00267 (10) | 0.91926 (3) | −0.00409 (5) | 0.01412 (10) | |
N3 | 0.16911 (9) | 0.98004 (3) | 0.14755 (5) | 0.01379 (9) | |
H1 | 0.1098 | 1.0093 | 0.1006 | 0.017* | |
N4 | 0.34093 (9) | 0.99876 (3) | 0.23756 (5) | 0.01274 (9) | |
N5 | 0.72206 (9) | 1.03311 (3) | 0.42028 (5) | 0.01207 (9) | |
N6 | 0.86571 (10) | 1.04359 (3) | 0.52215 (5) | 0.01467 (10) | |
C1 | −0.20026 (12) | 0.77461 (3) | −0.29399 (6) | 0.01656 (12) | |
H1A | −0.2271 | 0.8050 | −0.3464 | 0.020* | |
C2 | −0.22174 (12) | 0.71639 (3) | −0.33105 (6) | 0.01765 (12) | |
H2A | −0.2614 | 0.7077 | −0.4075 | 0.021* | |
C3 | −0.18281 (11) | 0.67161 (3) | −0.25156 (6) | 0.01502 (11) | |
C4 | −0.12243 (11) | 0.68343 (3) | −0.13639 (6) | 0.01594 (11) | |
H4A | −0.0979 | 0.6529 | −0.0845 | 0.019* | |
C5 | −0.09958 (11) | 0.74165 (3) | −0.10043 (6) | 0.01524 (11) | |
H5A | −0.0579 | 0.7501 | −0.0237 | 0.018* | |
C6 | −0.13877 (11) | 0.78790 (3) | −0.17873 (6) | 0.01341 (10) | |
C7 | −0.11200 (11) | 0.84940 (3) | −0.14139 (6) | 0.01443 (11) | |
H7A | −0.1597 | 0.8799 | −0.1938 | 0.017* | |
C8 | 0.13666 (10) | 0.92500 (3) | 0.10070 (6) | 0.01224 (10) | |
C9 | 0.37326 (12) | 0.89915 (3) | 0.31690 (6) | 0.01527 (11) | |
H9A | 0.2663 | 0.8990 | 0.3437 | 0.018* | |
H9B | 0.4857 | 0.8761 | 0.3696 | 0.018* | |
C10 | 0.44244 (10) | 0.96112 (3) | 0.31486 (6) | 0.01225 (10) | |
C11 | 0.62297 (10) | 0.98132 (3) | 0.41035 (6) | 0.01216 (10) | |
C12 | 0.71662 (11) | 0.95431 (3) | 0.51973 (6) | 0.01398 (11) | |
C13 | 0.69885 (10) | 1.07654 (3) | 0.33459 (6) | 0.01235 (10) | |
C14 | 0.68466 (12) | 1.13502 (3) | 0.35876 (6) | 0.01581 (11) | |
H14A | 0.6883 | 1.1460 | 0.4289 | 0.019* | |
C15 | 0.66483 (12) | 1.17767 (3) | 0.27707 (7) | 0.01669 (12) | |
H15A | 0.6581 | 1.2173 | 0.2928 | 0.020* | |
C16 | 0.65519 (11) | 1.16009 (3) | 0.17168 (6) | 0.01458 (11) | |
C17 | 0.67298 (12) | 1.10052 (3) | 0.14935 (6) | 0.01655 (12) | |
H17A | 0.6690 | 1.0892 | 0.0793 | 0.020* | |
C18 | 0.69642 (12) | 1.05866 (3) | 0.23103 (6) | 0.01542 (11) | |
H18A | 0.7104 | 1.0191 | 0.2172 | 0.019* | |
C19 | 0.61977 (13) | 1.25837 (3) | 0.10431 (8) | 0.02065 (13) | |
H19A | 0.5968 | 1.2798 | 0.0361 | 0.031* | |
H19B | 0.7459 | 1.2707 | 0.1638 | 0.031* | |
H19C | 0.5108 | 1.2659 | 0.1266 | 0.031* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.02240 (8) | 0.01084 (7) | 0.03075 (9) | −0.00245 (5) | 0.01366 (7) | −0.00500 (6) |
S1 | 0.01632 (7) | 0.00916 (6) | 0.01430 (7) | 0.00094 (5) | 0.00364 (6) | −0.00035 (5) |
O1 | 0.0158 (2) | 0.0165 (2) | 0.01175 (19) | 0.00025 (17) | 0.00369 (17) | 0.00065 (16) |
O2 | 0.0252 (3) | 0.0156 (2) | 0.0162 (2) | −0.00022 (19) | 0.0064 (2) | 0.00420 (18) |
O3 | 0.0257 (3) | 0.0128 (2) | 0.0186 (2) | −0.00033 (19) | 0.0087 (2) | 0.00338 (18) |
N1 | 0.0161 (2) | 0.0102 (2) | 0.0146 (2) | −0.00112 (18) | 0.00425 (19) | −0.00205 (17) |
N2 | 0.0163 (2) | 0.0099 (2) | 0.0132 (2) | −0.00053 (18) | 0.00306 (19) | −0.00127 (17) |
N3 | 0.0150 (2) | 0.0094 (2) | 0.0127 (2) | 0.00004 (17) | 0.00144 (18) | −0.00074 (17) |
N4 | 0.0135 (2) | 0.0108 (2) | 0.0118 (2) | −0.00057 (17) | 0.00305 (18) | −0.00070 (17) |
N5 | 0.0124 (2) | 0.0115 (2) | 0.0114 (2) | −0.00024 (17) | 0.00396 (17) | −0.00076 (17) |
N6 | 0.0152 (2) | 0.0152 (2) | 0.0117 (2) | −0.00103 (19) | 0.00366 (19) | −0.00106 (18) |
C1 | 0.0208 (3) | 0.0119 (3) | 0.0134 (3) | −0.0007 (2) | 0.0035 (2) | −0.0005 (2) |
C2 | 0.0218 (3) | 0.0133 (3) | 0.0156 (3) | −0.0015 (2) | 0.0056 (2) | −0.0025 (2) |
C3 | 0.0144 (3) | 0.0103 (2) | 0.0202 (3) | −0.0011 (2) | 0.0071 (2) | −0.0021 (2) |
C4 | 0.0176 (3) | 0.0116 (2) | 0.0188 (3) | 0.0002 (2) | 0.0077 (2) | 0.0014 (2) |
C5 | 0.0175 (3) | 0.0125 (2) | 0.0146 (3) | 0.0001 (2) | 0.0056 (2) | 0.0005 (2) |
C6 | 0.0137 (3) | 0.0105 (2) | 0.0137 (2) | −0.00017 (19) | 0.0034 (2) | −0.00092 (19) |
C7 | 0.0159 (3) | 0.0108 (2) | 0.0137 (2) | −0.0004 (2) | 0.0032 (2) | −0.00090 (19) |
C8 | 0.0131 (2) | 0.0100 (2) | 0.0127 (2) | −0.00038 (19) | 0.0044 (2) | −0.00029 (18) |
C9 | 0.0185 (3) | 0.0112 (2) | 0.0134 (2) | −0.0021 (2) | 0.0039 (2) | 0.0007 (2) |
C10 | 0.0132 (2) | 0.0105 (2) | 0.0120 (2) | −0.00038 (19) | 0.0041 (2) | −0.00019 (18) |
C11 | 0.0130 (2) | 0.0108 (2) | 0.0116 (2) | 0.00004 (19) | 0.00400 (19) | 0.00039 (18) |
C12 | 0.0148 (3) | 0.0137 (3) | 0.0122 (2) | 0.0012 (2) | 0.0045 (2) | 0.00047 (19) |
C13 | 0.0139 (2) | 0.0103 (2) | 0.0126 (2) | −0.00055 (19) | 0.0052 (2) | −0.00006 (19) |
C14 | 0.0207 (3) | 0.0117 (2) | 0.0157 (3) | −0.0002 (2) | 0.0082 (2) | −0.0019 (2) |
C15 | 0.0216 (3) | 0.0106 (2) | 0.0184 (3) | 0.0005 (2) | 0.0088 (2) | −0.0007 (2) |
C16 | 0.0156 (3) | 0.0116 (2) | 0.0162 (3) | −0.0006 (2) | 0.0061 (2) | 0.0010 (2) |
C17 | 0.0238 (3) | 0.0123 (3) | 0.0157 (3) | −0.0014 (2) | 0.0103 (2) | −0.0010 (2) |
C18 | 0.0219 (3) | 0.0107 (2) | 0.0153 (3) | −0.0008 (2) | 0.0094 (2) | −0.0013 (2) |
C19 | 0.0221 (3) | 0.0127 (3) | 0.0274 (4) | −0.0001 (2) | 0.0105 (3) | 0.0042 (2) |
Cl1—C3 | 1.7353 (7) | C4—C5 | 1.3897 (10) |
S1—C8 | 1.7426 (7) | C4—H4A | 0.9300 |
S1—C9 | 1.8125 (7) | C5—C6 | 1.4047 (10) |
O1—N6 | 1.3767 (8) | C5—H5A | 0.9300 |
O1—C12 | 1.4055 (9) | C6—C7 | 1.4653 (9) |
O2—C12 | 1.2145 (9) | C7—H7A | 0.9300 |
O3—C16 | 1.3582 (9) | C9—C10 | 1.4988 (9) |
O3—C19 | 1.4231 (10) | C9—H9A | 0.9700 |
N1—C7 | 1.2842 (9) | C9—H9B | 0.9700 |
N1—N2 | 1.3887 (8) | C10—C11 | 1.4514 (10) |
N2—C8 | 1.3061 (9) | C11—C12 | 1.4295 (9) |
N3—C8 | 1.3675 (9) | C13—C14 | 1.3790 (9) |
N3—N4 | 1.3724 (8) | C13—C18 | 1.3924 (9) |
N3—H1 | 0.8830 | C14—C15 | 1.3968 (10) |
N4—C10 | 1.2896 (9) | C14—H14A | 0.9300 |
N5—N6 | 1.3188 (8) | C15—C16 | 1.3939 (10) |
N5—C11 | 1.3564 (9) | C15—H15A | 0.9300 |
N5—C13 | 1.4411 (9) | C16—C17 | 1.4017 (10) |
C1—C2 | 1.3942 (10) | C17—C18 | 1.3788 (10) |
C1—C6 | 1.4007 (10) | C17—H17A | 0.9300 |
C1—H1A | 0.9300 | C18—H18A | 0.9300 |
C2—C3 | 1.3902 (11) | C19—H19A | 0.9600 |
C2—H2A | 0.9300 | C19—H19B | 0.9600 |
C3—C4 | 1.3938 (11) | C19—H19C | 0.9600 |
C8—S1—C9 | 97.36 (3) | C10—C9—H9A | 109.3 |
N6—O1—C12 | 110.94 (5) | S1—C9—H9A | 109.3 |
C16—O3—C19 | 117.09 (6) | C10—C9—H9B | 109.3 |
C7—N1—N2 | 116.04 (6) | S1—C9—H9B | 109.3 |
C8—N2—N1 | 110.05 (6) | H9A—C9—H9B | 108.0 |
C8—N3—N4 | 126.06 (6) | N4—C10—C11 | 118.23 (6) |
C8—N3—H1 | 116.0 | N4—C10—C9 | 123.36 (6) |
N4—N3—H1 | 111.2 | C11—C10—C9 | 118.15 (6) |
C10—N4—N3 | 118.51 (6) | N5—C11—C12 | 105.27 (6) |
N6—N5—C11 | 114.74 (6) | N5—C11—C10 | 127.54 (6) |
N6—N5—C13 | 115.93 (6) | C12—C11—C10 | 126.68 (6) |
C11—N5—C13 | 129.25 (6) | O2—C12—O1 | 121.08 (6) |
N5—N6—O1 | 104.71 (5) | O2—C12—C11 | 134.63 (7) |
C2—C1—C6 | 120.77 (7) | O1—C12—C11 | 104.28 (6) |
C2—C1—H1A | 119.6 | C14—C13—C18 | 121.78 (6) |
C6—C1—H1A | 119.6 | C14—C13—N5 | 118.81 (6) |
C3—C2—C1 | 118.77 (7) | C18—C13—N5 | 119.38 (6) |
C3—C2—H2A | 120.6 | C13—C14—C15 | 119.45 (6) |
C1—C2—H2A | 120.6 | C13—C14—H14A | 120.3 |
C2—C3—C4 | 121.79 (6) | C15—C14—H14A | 120.3 |
C2—C3—Cl1 | 119.07 (6) | C16—C15—C14 | 119.24 (6) |
C4—C3—Cl1 | 119.13 (5) | C16—C15—H15A | 120.4 |
C5—C4—C3 | 118.85 (6) | C14—C15—H15A | 120.4 |
C5—C4—H4A | 120.6 | O3—C16—C15 | 124.71 (6) |
C3—C4—H4A | 120.6 | O3—C16—C17 | 114.86 (6) |
C4—C5—C6 | 120.73 (7) | C15—C16—C17 | 120.43 (6) |
C4—C5—H5A | 119.6 | C18—C17—C16 | 120.11 (6) |
C6—C5—H5A | 119.6 | C18—C17—H17A | 119.9 |
C1—C6—C5 | 119.08 (6) | C16—C17—H17A | 119.9 |
C1—C6—C7 | 119.79 (6) | C17—C18—C13 | 118.94 (6) |
C5—C6—C7 | 121.11 (6) | C17—C18—H18A | 120.5 |
N1—C7—C6 | 118.46 (6) | C13—C18—H18A | 120.5 |
N1—C7—H7A | 120.8 | O3—C19—H19A | 109.5 |
C6—C7—H7A | 120.8 | O3—C19—H19B | 109.5 |
N2—C8—N3 | 117.95 (6) | H19A—C19—H19B | 109.5 |
N2—C8—S1 | 121.64 (5) | O3—C19—H19C | 109.5 |
N3—C8—S1 | 120.34 (5) | H19A—C19—H19C | 109.5 |
C10—C9—S1 | 111.64 (5) | H19B—C19—H19C | 109.5 |
C7—N1—N2—C8 | −164.75 (7) | C13—N5—C11—C12 | 175.91 (6) |
C8—N3—N4—C10 | −31.43 (10) | N6—N5—C11—C10 | 171.22 (6) |
C11—N5—N6—O1 | −0.60 (8) | C13—N5—C11—C10 | −11.96 (11) |
C13—N5—N6—O1 | −177.86 (5) | N4—C10—C11—N5 | −12.74 (10) |
C12—O1—N6—N5 | 1.94 (7) | C9—C10—C11—N5 | 172.88 (6) |
C6—C1—C2—C3 | 0.59 (12) | N4—C10—C11—C12 | 157.77 (7) |
C1—C2—C3—C4 | −0.26 (11) | C9—C10—C11—C12 | −16.60 (10) |
C1—C2—C3—Cl1 | −179.36 (6) | N6—O1—C12—O2 | 178.68 (7) |
C2—C3—C4—C5 | −0.40 (11) | N6—O1—C12—C11 | −2.46 (7) |
Cl1—C3—C4—C5 | 178.71 (6) | N5—C11—C12—O2 | −179.41 (8) |
C3—C4—C5—C6 | 0.72 (11) | C10—C11—C12—O2 | 8.38 (13) |
C2—C1—C6—C5 | −0.27 (11) | N5—C11—C12—O1 | 1.97 (7) |
C2—C1—C6—C7 | 178.37 (7) | C10—C11—C12—O1 | −170.25 (6) |
C4—C5—C6—C1 | −0.40 (11) | N6—N5—C13—C14 | −49.70 (9) |
C4—C5—C6—C7 | −179.03 (7) | C11—N5—C13—C14 | 133.51 (8) |
N2—N1—C7—C6 | 179.07 (6) | N6—N5—C13—C18 | 128.71 (7) |
C1—C6—C7—N1 | −167.55 (7) | C11—N5—C13—C18 | −48.07 (10) |
C5—C6—C7—N1 | 11.07 (11) | C18—C13—C14—C15 | 0.78 (11) |
N1—N2—C8—N3 | −175.58 (6) | N5—C13—C14—C15 | 179.15 (7) |
N1—N2—C8—S1 | 7.51 (8) | C13—C14—C15—C16 | 1.44 (11) |
N4—N3—C8—N2 | −157.12 (7) | C19—O3—C16—C15 | 3.20 (11) |
N4—N3—C8—S1 | 19.84 (9) | C19—O3—C16—C17 | −176.93 (7) |
C9—S1—C8—N2 | −165.71 (6) | C14—C15—C16—O3 | 177.44 (7) |
C9—S1—C8—N3 | 17.44 (6) | C14—C15—C16—C17 | −2.43 (11) |
C8—S1—C9—C10 | −44.06 (6) | O3—C16—C17—C18 | −178.67 (7) |
N3—N4—C10—C11 | −179.45 (6) | C15—C16—C17—C18 | 1.21 (12) |
N3—N4—C10—C9 | −5.39 (10) | C16—C17—C18—C13 | 0.99 (12) |
S1—C9—C10—N4 | 44.63 (9) | C14—C13—C18—C17 | −2.00 (11) |
S1—C9—C10—C11 | −141.30 (5) | N5—C13—C18—C17 | 179.63 (7) |
N6—N5—C11—C12 | −0.91 (8) |
Cg2 is the centroid of the N3/N4/C10/C9/S1 thiadiazine ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H1···N2i | 0.88 | 2.00 | 2.8841 (9) | 174 |
C1—H1A···O2ii | 0.93 | 2.59 | 3.4898 (10) | 162 |
C9—H9B···O2 | 0.97 | 2.41 | 3.0433 (10) | 123 |
C18—H18A···Cl1iii | 0.93 | 2.77 | 3.6978 (7) | 173 |
C19—H19B···Cg2iv | 0.96 | 2.79 | 3.5792 (11) | 140 |
Symmetry codes: (i) −x, −y+2, −z; (ii) x−1, y, z−1; (iii) x+1, −y+3/2, z+1/2; (iv) −x+1, −y+2, −z. |
Experimental details
Crystal data | |
Chemical formula | C19H15ClN6O3S |
Mr | 442.88 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 7.2322 (2), 22.7311 (6), 12.9299 (3) |
β (°) | 114.426 (1) |
V (Å3) | 1935.37 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.34 |
Crystal size (mm) | 0.56 × 0.33 × 0.19 |
Data collection | |
Diffractometer | Bruker SMART APEXII DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.832, 0.937 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 38523, 10172, 8764 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.858 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.088, 1.03 |
No. of reflections | 10172 |
No. of parameters | 272 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.61, −0.31 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg2 is the centroid of the N3/N4/C10/C9/S1 thiadiazine ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H1···N2i | 0.88 | 2.00 | 2.8841 (9) | 174 |
C1—H1A···O2ii | 0.93 | 2.59 | 3.4898 (10) | 162 |
C9—H9B···O2 | 0.97 | 2.41 | 3.0433 (10) | 123 |
C18—H18A···Cl1iii | 0.93 | 2.77 | 3.6978 (7) | 173 |
C19—H19B···Cg2iv | 0.96 | 2.79 | 3.5792 (11) | 140 |
Symmetry codes: (i) −x, −y+2, −z; (ii) x−1, y, z−1; (iii) x+1, −y+3/2, z+1/2; (iv) −x+1, −y+2, −z. |
Acknowledgements
The authors thank Universiti Sains Malaysia (USM) for the Research University Grant (1001/PFIZIK/811160). WSL also thanks the Malaysian Government and USM for the award of a research fellowship.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Sydnones constitute a well defined class of mesoionic compounds consisting of the 1,2,3-oxadiazole ring system. The introduction of the concept of mesoionic structure for certain heterocyclic compounds in the year 1949 has proved to be a fruitful development in heterocyclic chemistry (Baker et al., 1949). The study of sydnones still remains a field of interest because of their electronic structures and also because of the various types of biological activities displayed by some of them. Interest in sydnone derivatives has also been encouraged by the discovery that they exhibit various pharmacological activities (Hedge et al., 2008; Rai et al., 2008).
Encouraged by these reports and in continuation of our research for biologically active nitrogen containing heterocycles, a thiadiazine moiety at the 4-position of the phenylsydnone was introduced. The title compound was synthesized by the condensation of 4-bromoacetyl-3-arylsydnones with N'-[(4-chlorohlorophenyl)methylidene]thiocarbonohydrazide. 4-Bromoacetyl-3-arylsydnones were in turn obtained by the photochemical bromination of 4-acetyl-3-arylsydnones (Kalluraya et al., 2003).
The title compound (Fig. 1) exists in trans and cis configurations with respect to the acyclic C7═N1 and C8═N2 bonds [C7═N1 = 1.2842 (9) Å and C8═N2 = 1.3061 (9) Å], respectively. The 3,6-dihydro-2H-1,3,4-thiadiazine ring (N3/N4/C10/C9/S1) adopts a half-boat conformation with the puckering parameters (Cremer & Pople, 1975), Q = 0.5322 (7) Å, Θ = 108.60 (8)°, ϕ = 136.74 (8)°. The sydnone ring (N5/N6/O1/C12/C11) is approximately planar with a maximum deviation of 0.013 (1) Å at atom C12 and forms dihedral angles of 34.76 (4) and 48.67 (4)° with the benzene rings (C1–C6 and C13–C18), respectively. An intramolecular C9—H9B···O2 hydrogen bond (Table 1) stabilizes the molecular structure and forms an S(6) ring motif (Bernstein et al., 1995). Bond lengths (Allen et al., 1987) and angles are within normal ranges and are comparable to the related structures (Fun et al., 2010; Fun et al., 2011).
In the crystal packing (Fig. 2), intermolecular N3—H1···N2 hydrogen bonds (Table 1) link centrosymmetrically related molecules to form dimers, generating R22(8) ring motifs (Bernstein et al., 1995). The dimers are then linked into a three-dimensional network by intermolecular C1—H1A···O2 and C18—H18A···Cl1 hydrogen bonds (Table 1) and stabilized by C—H···π interactions. The crystal structure is further consolidated by π–π interactions (Table 1), involving the sydnone rings (Cg1) with centroid-to-centroid separations Cg1···Cg1v = 3.4198 (5) Å [symmetry code: (v) 2 - x,2 - y,1 - z].