organic compounds
(22E,24R)-3β,5α,9α-Trihydroxyergosta-7,22-dien-6-one monohydrate
aKey Laboratory of Marine Drugs of the Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, 266003 Qingdao, People's Republic of China
*Correspondence e-mail: weimingzhu@ouc.edu.cn
The title ergosterol compound, C28H44O4·H2O, is composed of four fused rings (three six-membered and one five-membered) and a side chain. It is a derivative of ergosterol and was isolated from a marine-derived halotolerant fungus, Cladosporium cladosporioides PXP-49. In the crystal, molecules are assembled by classical O—H⋯O hydrogen bonds, forming a two-dimensional network, with base vectors [100] and [010]. The was assigned from the measured and reference to the literature. An intramolecular O—H⋯O hydrogen bond occurs.
Related literature
For general background to the cytotoxic activity of similar compounds, see: Valisolalao et al. (1983); Kawagishi et al. (1988); Takaishi et al. (1991); Ishizuka et al. (1997); Yaoita et al. (1998); Sun et al. (2006); Tang et al. (2007); Cui et al. (2010). For details of ring conformations and puckering parameters, see: Cremer & Pople (1975); Baginski et al. (1989); Gonzalez et al. (2002).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Siemens, 1994); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S160053681101347X/su2267sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681101347X/su2267Isup2.hkl
The isolated halotolerant fugal strain Cladosporium cladosporioides PXP-49, was isolated from roots of Rhizophora stylosa collected in the mangrove conservation area of Wenchang, Hainan, China. The working strain was cultured under static conditions at 298 K for 45 days in two hundred 1 L conical flasks containing the liquid medium (300 ml/flask) composed of maltose (20 g/L), mannitol (20 g/L), glucose (10 g/L), monosodium glutamate (10 g/L), KH2PO4 (5 g/L), MgSO4 (0.3 g/L), yeast extract (3 g/L), corn steep liquor (1 g/L), NaCl (100 g/L) after adjusting its pH to 10.0. The fermented whole broth (60 L) was filtered through cheese cloth to separate into supernatant and mycelia. The mycelia was extracted three times with acetone. The acetone solution was concentrated under reduced pressure to afford an aqueous solution. The aqueous solution was extracted three times with ethyl acetate to give an ethyl acetate solution which was concentrated under reduced pressure to give a crude extract (28 g).The crude extract was subjected to
over silica gel column using a stepwise of CHCl3-petroleum ether (0–100%) and then MeOH-CHCl3 (0–50%), to yield five fractions (Fr.1-Fr.5). The Fr.2 was further purified by another silica gel column using a step of petroleum ether:acetone, followed by chromatographing on a Sephadex LH-20 eluting with CHCl3—MeOH (1:1) to afford three subfractions (Fr.2–6-1-Fr.2–6-3). The title compound (5.5 mg) was purified by extensive preparative HPLC using MeOH-H2O (9:1) from Fr.2–6-1. The single crystals were obtained by slow evaporation of CHCl3—MeOH (1:1) solution at 298 K.All the H-atoms were positioned geometrically and allowed to ride on their parent atom: O-Hwater = 0.85 Å, O-Hhydroxyl = 0.82 Å, C-H = 0.93, 096, 0.97 and 0.98 Å for CH(allyl), CH3, CH2, and CH(methine) H-atoms, respectively, with Uiso(H) = k × Ueq(O,C), where k = 1.5 for OHhydroxyl and CH3 H-atoms, and k = 1.2 for all other H-atoms. The terminal methyl groups of the side chain undergo a certain amount of thermal motion. As mentioned above, the
could not be determined crystallographically and the Friedel pairs were merged. The was assigned from the measured and reference to the literature.Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Siemens, 1994); software used to prepare material for publication: WinGX (Farrugia, 1999).C28H44O4·H2O | F(000) = 508 |
Mr = 462.65 | Dx = 1.106 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 1224 reflections |
a = 6.7605 (8) Å | θ = 2.9–18.6° |
b = 7.2626 (11) Å | µ = 0.07 mm−1 |
c = 28.461 (2) Å | T = 298 K |
β = 96.083 (1)° | Needle, colourless |
V = 1389.5 (3) Å3 | 0.40 × 0.35 × 0.17 mm |
Z = 2 |
Bruker SMART CCD area-detector diffractometer | 2641 independent reflections |
Radiation source: fine-focus sealed tube | 1557 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.057 |
ϕ and ω scans | θmax = 25.0°, θmin = 2.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −7→8 |
Tmin = 0.971, Tmax = 0.988 | k = −8→8 |
7040 measured reflections | l = −22→33 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.108 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.036P)2] where P = (Fo2 + 2Fc2)/3 |
2641 reflections | (Δ/σ)max = 0.001 |
304 parameters | Δρmax = 0.14 e Å−3 |
1 restraint | Δρmin = −0.15 e Å−3 |
C28H44O4·H2O | V = 1389.5 (3) Å3 |
Mr = 462.65 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 6.7605 (8) Å | µ = 0.07 mm−1 |
b = 7.2626 (11) Å | T = 298 K |
c = 28.461 (2) Å | 0.40 × 0.35 × 0.17 mm |
β = 96.083 (1)° |
Bruker SMART CCD area-detector diffractometer | 2641 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1557 reflections with I > 2σ(I) |
Tmin = 0.971, Tmax = 0.988 | Rint = 0.057 |
7040 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | 1 restraint |
wR(F2) = 0.108 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.14 e Å−3 |
2641 reflections | Δρmin = −0.15 e Å−3 |
304 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.8875 (4) | 0.0054 (4) | 0.52563 (10) | 0.0738 (10) | |
H1 | 0.9909 | 0.0624 | 0.5235 | 0.111* | |
O2 | 0.4476 (4) | 0.2358 (4) | 0.60388 (9) | 0.0554 (8) | |
H2 | 0.3863 | 0.2270 | 0.5775 | 0.083* | |
O3 | 0.5562 (4) | 0.6238 (4) | 0.55751 (10) | 0.0686 (9) | |
O4 | 0.4840 (4) | 0.2365 (4) | 0.69723 (9) | 0.0618 (8) | |
H4 | 0.4212 | 0.2108 | 0.6718 | 0.093* | |
O5 | 0.2328 (4) | 0.1982 (4) | 0.51822 (8) | 0.0572 (8) | |
H5C | 0.1825 | 0.3000 | 0.5082 | 0.069* | |
H5D | 0.3038 | 0.1571 | 0.4976 | 0.069* | |
C1 | 0.8286 (7) | 0.1178 (6) | 0.65380 (14) | 0.0609 (12) | |
H1A | 0.9211 | 0.1058 | 0.6821 | 0.073* | |
H1B | 0.7149 | 0.0399 | 0.6576 | 0.073* | |
C2 | 0.9293 (6) | 0.0501 (6) | 0.61159 (15) | 0.0665 (13) | |
H2A | 1.0513 | 0.1188 | 0.6097 | 0.080* | |
H2B | 0.9640 | −0.0787 | 0.6161 | 0.080* | |
C3 | 0.7952 (6) | 0.0726 (6) | 0.56552 (15) | 0.0595 (12) | |
H3 | 0.6758 | −0.0019 | 0.5680 | 0.071* | |
C4 | 0.7289 (6) | 0.2714 (6) | 0.55897 (13) | 0.0515 (11) | |
H4A | 0.6375 | 0.2816 | 0.5304 | 0.062* | |
H4B | 0.8437 | 0.3478 | 0.5551 | 0.062* | |
C5 | 0.6271 (6) | 0.3417 (5) | 0.60092 (13) | 0.0469 (11) | |
C6 | 0.5590 (6) | 0.5400 (6) | 0.59528 (15) | 0.0506 (11) | |
C7 | 0.4882 (6) | 0.6255 (6) | 0.63688 (13) | 0.0513 (11) | |
H7 | 0.4196 | 0.7364 | 0.6331 | 0.062* | |
C8 | 0.5173 (6) | 0.5519 (5) | 0.67999 (14) | 0.0454 (10) | |
C9 | 0.6322 (6) | 0.3742 (5) | 0.69000 (14) | 0.0481 (11) | |
C10 | 0.7588 (6) | 0.3185 (5) | 0.64904 (14) | 0.0477 (11) | |
C11 | 0.7618 (7) | 0.3829 (6) | 0.73789 (14) | 0.0615 (13) | |
H11A | 0.8054 | 0.2592 | 0.7467 | 0.074* | |
H11B | 0.8795 | 0.4554 | 0.7340 | 0.074* | |
C12 | 0.6586 (7) | 0.4650 (6) | 0.77811 (14) | 0.0663 (13) | |
H12A | 0.7531 | 0.4736 | 0.8061 | 0.080* | |
H12B | 0.5519 | 0.3838 | 0.7852 | 0.080* | |
C13 | 0.5735 (6) | 0.6555 (6) | 0.76590 (13) | 0.0510 (11) | |
C14 | 0.4259 (6) | 0.6303 (6) | 0.72149 (13) | 0.0469 (10) | |
H14 | 0.3312 | 0.5369 | 0.7300 | 0.056* | |
C15 | 0.3080 (6) | 0.8098 (6) | 0.71665 (14) | 0.0564 (12) | |
H15A | 0.1746 | 0.7887 | 0.7014 | 0.068* | |
H15B | 0.3738 | 0.8996 | 0.6984 | 0.068* | |
C16 | 0.3026 (7) | 0.8755 (6) | 0.76823 (15) | 0.0661 (13) | |
H16A | 0.1674 | 0.8727 | 0.7767 | 0.079* | |
H16B | 0.3523 | 1.0005 | 0.7719 | 0.079* | |
C17 | 0.4362 (6) | 0.7424 (6) | 0.80017 (14) | 0.0596 (12) | |
H17 | 0.3503 | 0.6441 | 0.8101 | 0.072* | |
C18 | 0.5296 (7) | 0.8390 (7) | 0.84525 (15) | 0.0718 (14) | |
H18 | 0.6067 | 0.9439 | 0.8354 | 0.086* | |
C19 | 0.3696 (8) | 0.9138 (8) | 0.87252 (16) | 0.0796 (15) | |
H19 | 0.2887 | 0.8264 | 0.8848 | 0.096* | |
C20 | 0.3289 (8) | 1.0835 (8) | 0.88128 (17) | 0.0869 (16) | |
H20 | 0.4126 | 1.1709 | 0.8700 | 0.104* | |
C21 | 0.1657 (9) | 1.1575 (9) | 0.90707 (19) | 0.1016 (19) | |
H21 | 0.1019 | 1.0547 | 0.9219 | 0.122* | |
C22 | 0.2406 (12) | 1.2938 (10) | 0.9449 (2) | 0.131 (3) | |
H22 | 0.3067 | 1.3949 | 0.9299 | 0.157* | |
C23 | 0.0845 (14) | 1.3730 (13) | 0.9714 (3) | 0.211 (4) | |
H23A | 0.0014 | 1.2760 | 0.9811 | 0.316* | |
H23B | 0.0052 | 1.4578 | 0.9516 | 0.316* | |
H23C | 0.1454 | 1.4366 | 0.9988 | 0.316* | |
C24 | 0.9393 (6) | 0.4470 (6) | 0.64853 (14) | 0.0608 (12) | |
H24A | 1.0417 | 0.4093 | 0.6725 | 0.091* | |
H24B | 0.9000 | 0.5711 | 0.6546 | 0.091* | |
H24C | 0.9888 | 0.4409 | 0.6182 | 0.091* | |
C25 | 0.7358 (6) | 0.7927 (6) | 0.75607 (15) | 0.0681 (14) | |
H25A | 0.7981 | 0.7527 | 0.7291 | 0.102* | |
H25B | 0.8335 | 0.7996 | 0.7831 | 0.102* | |
H25C | 0.6775 | 0.9120 | 0.7499 | 0.102* | |
C26 | 0.6712 (9) | 0.7170 (9) | 0.87720 (17) | 0.110 (2) | |
H26A | 0.7094 | 0.7798 | 0.9064 | 0.165* | |
H26B | 0.7876 | 0.6909 | 0.8617 | 0.165* | |
H26C | 0.6055 | 0.6038 | 0.8835 | 0.165* | |
C27 | 0.0112 (11) | 1.2509 (12) | 0.8717 (2) | 0.186 (4) | |
H27A | 0.0681 | 1.3595 | 0.8593 | 0.280* | |
H27B | −0.1028 | 1.2843 | 0.8872 | 0.280* | |
H27C | −0.0285 | 1.1675 | 0.8462 | 0.280* | |
C28 | 0.3933 (12) | 1.1993 (12) | 0.9799 (2) | 0.175 (3) | |
H28A | 0.3376 | 1.0880 | 0.9910 | 0.262* | |
H28B | 0.4293 | 1.2800 | 1.0061 | 0.262* | |
H28C | 0.5095 | 1.1705 | 0.9646 | 0.262* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.081 (2) | 0.070 (2) | 0.076 (2) | −0.0171 (19) | 0.0347 (17) | −0.0278 (17) |
O2 | 0.0557 (18) | 0.0629 (19) | 0.0479 (16) | −0.0209 (16) | 0.0069 (13) | −0.0030 (14) |
O3 | 0.092 (2) | 0.068 (2) | 0.0496 (18) | 0.0010 (18) | 0.0244 (17) | 0.0116 (16) |
O4 | 0.081 (2) | 0.0486 (18) | 0.0589 (18) | −0.0105 (17) | 0.0215 (16) | 0.0065 (14) |
O5 | 0.0665 (19) | 0.0589 (18) | 0.0477 (16) | 0.0020 (15) | 0.0129 (14) | 0.0026 (14) |
C1 | 0.073 (3) | 0.053 (3) | 0.058 (3) | 0.005 (3) | 0.010 (2) | −0.002 (2) |
C2 | 0.073 (3) | 0.055 (3) | 0.075 (3) | 0.007 (3) | 0.022 (3) | −0.002 (3) |
C3 | 0.062 (3) | 0.060 (3) | 0.061 (3) | −0.005 (2) | 0.023 (2) | −0.014 (2) |
C4 | 0.053 (3) | 0.056 (3) | 0.048 (3) | −0.013 (2) | 0.012 (2) | −0.007 (2) |
C5 | 0.054 (3) | 0.041 (3) | 0.047 (3) | −0.011 (2) | 0.011 (2) | −0.001 (2) |
C6 | 0.056 (3) | 0.047 (3) | 0.049 (3) | −0.011 (2) | 0.009 (2) | 0.004 (2) |
C7 | 0.062 (3) | 0.048 (3) | 0.046 (3) | 0.000 (2) | 0.013 (2) | 0.001 (2) |
C8 | 0.050 (3) | 0.041 (3) | 0.045 (3) | −0.010 (2) | 0.006 (2) | −0.001 (2) |
C9 | 0.055 (3) | 0.042 (3) | 0.048 (3) | 0.001 (2) | 0.009 (2) | 0.005 (2) |
C10 | 0.056 (3) | 0.041 (2) | 0.047 (3) | −0.004 (2) | 0.010 (2) | −0.0045 (19) |
C11 | 0.075 (3) | 0.060 (3) | 0.049 (3) | 0.012 (3) | 0.002 (2) | −0.003 (2) |
C12 | 0.084 (3) | 0.066 (3) | 0.048 (3) | 0.008 (3) | 0.004 (2) | 0.000 (2) |
C13 | 0.058 (3) | 0.054 (3) | 0.042 (2) | −0.006 (2) | 0.008 (2) | −0.004 (2) |
C14 | 0.049 (2) | 0.046 (3) | 0.047 (2) | −0.009 (2) | 0.009 (2) | −0.001 (2) |
C15 | 0.060 (3) | 0.054 (3) | 0.056 (3) | −0.003 (2) | 0.009 (2) | −0.007 (2) |
C16 | 0.065 (3) | 0.071 (3) | 0.065 (3) | −0.008 (3) | 0.016 (3) | −0.017 (3) |
C17 | 0.066 (3) | 0.061 (3) | 0.054 (3) | −0.003 (3) | 0.014 (2) | −0.007 (2) |
C18 | 0.087 (4) | 0.078 (3) | 0.051 (3) | 0.003 (3) | 0.008 (3) | −0.012 (3) |
C19 | 0.101 (4) | 0.084 (4) | 0.056 (3) | 0.005 (4) | 0.018 (3) | −0.014 (3) |
C20 | 0.111 (4) | 0.089 (4) | 0.063 (3) | 0.007 (4) | 0.016 (3) | −0.018 (3) |
C21 | 0.125 (5) | 0.109 (5) | 0.072 (4) | 0.042 (4) | 0.017 (4) | −0.019 (4) |
C22 | 0.160 (7) | 0.132 (6) | 0.102 (5) | 0.053 (5) | 0.025 (5) | −0.033 (5) |
C23 | 0.236 (10) | 0.210 (10) | 0.191 (9) | 0.069 (9) | 0.052 (7) | −0.078 (8) |
C24 | 0.058 (3) | 0.065 (3) | 0.060 (3) | −0.008 (3) | 0.007 (2) | −0.013 (2) |
C25 | 0.059 (3) | 0.082 (4) | 0.064 (3) | −0.009 (3) | 0.009 (2) | −0.020 (3) |
C26 | 0.128 (5) | 0.132 (5) | 0.066 (3) | 0.040 (5) | −0.008 (3) | −0.022 (4) |
C27 | 0.166 (7) | 0.252 (11) | 0.135 (6) | 0.113 (8) | −0.015 (5) | −0.017 (7) |
C28 | 0.214 (9) | 0.195 (9) | 0.111 (5) | 0.036 (8) | −0.004 (6) | −0.038 (6) |
O1—C3 | 1.438 (4) | C14—H14 | 0.9800 |
O1—H1 | 0.8200 | C15—C16 | 1.548 (5) |
O2—C5 | 1.447 (4) | C15—H15A | 0.9700 |
O2—H2 | 0.8200 | C15—H15B | 0.9700 |
O3—C6 | 1.234 (4) | C16—C17 | 1.550 (6) |
O4—C9 | 1.446 (5) | C16—H16A | 0.9700 |
O4—H4 | 0.8200 | C16—H16B | 0.9700 |
O5—H5C | 0.8500 | C17—C18 | 1.538 (5) |
O5—H5D | 0.8500 | C17—H17 | 0.9800 |
C1—C2 | 1.524 (5) | C18—C19 | 1.498 (6) |
C1—C10 | 1.533 (5) | C18—C26 | 1.531 (7) |
C1—H1A | 0.9700 | C18—H18 | 0.9800 |
C1—H1B | 0.9700 | C19—C20 | 1.293 (6) |
C2—C3 | 1.522 (6) | C19—H19 | 0.9300 |
C2—H2A | 0.9700 | C20—C21 | 1.489 (7) |
C2—H2B | 0.9700 | C20—H20 | 0.9300 |
C3—C4 | 1.517 (6) | C21—C22 | 1.510 (8) |
C3—H3 | 0.9800 | C21—C27 | 1.531 (8) |
C4—C5 | 1.528 (5) | C21—H21 | 0.9800 |
C4—H4A | 0.9700 | C22—C23 | 1.478 (9) |
C4—H4B | 0.9700 | C22—C28 | 1.520 (9) |
C5—C6 | 1.516 (6) | C22—H22 | 0.9800 |
C5—C10 | 1.561 (5) | C23—H23A | 0.9600 |
C6—C7 | 1.461 (5) | C23—H23B | 0.9600 |
C7—C8 | 1.334 (5) | C23—H23C | 0.9600 |
C7—H7 | 0.9300 | C24—H24A | 0.9600 |
C8—C14 | 1.502 (5) | C24—H24B | 0.9600 |
C8—C9 | 1.518 (5) | C24—H24C | 0.9600 |
C9—C11 | 1.542 (5) | C25—H25A | 0.9600 |
C9—C10 | 1.571 (5) | C25—H25B | 0.9600 |
C10—C24 | 1.537 (5) | C25—H25C | 0.9600 |
C11—C12 | 1.524 (5) | C26—H26A | 0.9600 |
C11—H11A | 0.9700 | C26—H26B | 0.9600 |
C11—H11B | 0.9700 | C26—H26C | 0.9600 |
C12—C13 | 1.524 (6) | C27—H27A | 0.9600 |
C12—H12A | 0.9700 | C27—H27B | 0.9600 |
C12—H12B | 0.9700 | C27—H27C | 0.9600 |
C13—C25 | 1.529 (6) | C28—H28A | 0.9600 |
C13—C14 | 1.536 (5) | C28—H28B | 0.9600 |
C13—C17 | 1.551 (5) | C28—H28C | 0.9600 |
C14—C15 | 1.527 (5) | ||
C3—O1—H1 | 109.5 | C14—C15—C16 | 104.0 (3) |
C5—O2—H2 | 109.5 | C14—C15—H15A | 111.0 |
C9—O4—H4 | 109.5 | C16—C15—H15A | 111.0 |
H5C—O5—H5D | 108.0 | C14—C15—H15B | 111.0 |
C2—C1—C10 | 113.3 (4) | C16—C15—H15B | 111.0 |
C2—C1—H1A | 108.9 | H15A—C15—H15B | 109.0 |
C10—C1—H1A | 108.9 | C15—C16—C17 | 107.1 (3) |
C2—C1—H1B | 108.9 | C15—C16—H16A | 110.3 |
C10—C1—H1B | 108.9 | C17—C16—H16A | 110.3 |
H1A—C1—H1B | 107.7 | C15—C16—H16B | 110.3 |
C3—C2—C1 | 111.7 (4) | C17—C16—H16B | 110.3 |
C3—C2—H2A | 109.3 | H16A—C16—H16B | 108.6 |
C1—C2—H2A | 109.3 | C18—C17—C16 | 111.5 (4) |
C3—C2—H2B | 109.3 | C18—C17—C13 | 119.3 (4) |
C1—C2—H2B | 109.3 | C16—C17—C13 | 103.6 (3) |
H2A—C2—H2B | 107.9 | C18—C17—H17 | 107.3 |
O1—C3—C4 | 111.9 (4) | C16—C17—H17 | 107.3 |
O1—C3—C2 | 112.0 (3) | C13—C17—H17 | 107.3 |
C4—C3—C2 | 110.4 (3) | C19—C18—C26 | 110.0 (4) |
O1—C3—H3 | 107.4 | C19—C18—C17 | 110.0 (4) |
C4—C3—H3 | 107.4 | C26—C18—C17 | 114.0 (4) |
C2—C3—H3 | 107.4 | C19—C18—H18 | 107.5 |
C3—C4—C5 | 111.9 (3) | C26—C18—H18 | 107.5 |
C3—C4—H4A | 109.2 | C17—C18—H18 | 107.5 |
C5—C4—H4A | 109.2 | C20—C19—C18 | 128.7 (6) |
C3—C4—H4B | 109.2 | C20—C19—H19 | 115.6 |
C5—C4—H4B | 109.2 | C18—C19—H19 | 115.6 |
H4A—C4—H4B | 107.9 | C19—C20—C21 | 128.5 (6) |
O2—C5—C6 | 105.3 (3) | C19—C20—H20 | 115.7 |
O2—C5—C4 | 108.5 (3) | C21—C20—H20 | 115.7 |
C6—C5—C4 | 113.1 (3) | C20—C21—C22 | 112.2 (5) |
O2—C5—C10 | 107.2 (3) | C20—C21—C27 | 109.0 (5) |
C6—C5—C10 | 109.5 (3) | C22—C21—C27 | 109.4 (6) |
C4—C5—C10 | 112.8 (3) | C20—C21—H21 | 108.7 |
O3—C6—C7 | 121.4 (4) | C22—C21—H21 | 108.7 |
O3—C6—C5 | 122.5 (4) | C27—C21—H21 | 108.7 |
C7—C6—C5 | 116.1 (4) | C23—C22—C21 | 114.6 (7) |
C8—C7—C6 | 123.1 (4) | C23—C22—C28 | 108.2 (7) |
C8—C7—H7 | 118.4 | C21—C22—C28 | 108.9 (6) |
C6—C7—H7 | 118.4 | C23—C22—H22 | 108.3 |
C7—C8—C14 | 122.6 (4) | C21—C22—H22 | 108.3 |
C7—C8—C9 | 122.4 (4) | C28—C22—H22 | 108.3 |
C14—C8—C9 | 114.8 (3) | C22—C23—H23A | 109.5 |
O4—C9—C8 | 105.4 (3) | C22—C23—H23B | 109.5 |
O4—C9—C11 | 103.9 (3) | H23A—C23—H23B | 109.5 |
C8—C9—C11 | 111.3 (3) | C22—C23—H23C | 109.5 |
O4—C9—C10 | 111.6 (3) | H23A—C23—H23C | 109.5 |
C8—C9—C10 | 112.8 (3) | H23B—C23—H23C | 109.5 |
C11—C9—C10 | 111.3 (3) | C10—C24—H24A | 109.5 |
C1—C10—C24 | 109.9 (3) | C10—C24—H24B | 109.5 |
C1—C10—C5 | 108.8 (3) | H24A—C24—H24B | 109.5 |
C24—C10—C5 | 107.8 (3) | C10—C24—H24C | 109.5 |
C1—C10—C9 | 111.5 (3) | H24A—C24—H24C | 109.5 |
C24—C10—C9 | 110.2 (3) | H24B—C24—H24C | 109.5 |
C5—C10—C9 | 108.6 (3) | C13—C25—H25A | 109.5 |
C12—C11—C9 | 114.7 (4) | C13—C25—H25B | 109.5 |
C12—C11—H11A | 108.6 | H25A—C25—H25B | 109.5 |
C9—C11—H11A | 108.6 | C13—C25—H25C | 109.5 |
C12—C11—H11B | 108.6 | H25A—C25—H25C | 109.5 |
C9—C11—H11B | 108.6 | H25B—C25—H25C | 109.5 |
H11A—C11—H11B | 107.6 | C18—C26—H26A | 109.5 |
C11—C12—C13 | 112.1 (3) | C18—C26—H26B | 109.5 |
C11—C12—H12A | 109.2 | H26A—C26—H26B | 109.5 |
C13—C12—H12A | 109.2 | C18—C26—H26C | 109.5 |
C11—C12—H12B | 109.2 | H26A—C26—H26C | 109.5 |
C13—C12—H12B | 109.2 | H26B—C26—H26C | 109.5 |
H12A—C12—H12B | 107.9 | C21—C27—H27A | 109.5 |
C12—C13—C25 | 111.9 (4) | C21—C27—H27B | 109.5 |
C12—C13—C14 | 106.0 (3) | H27A—C27—H27B | 109.5 |
C25—C13—C14 | 110.1 (3) | C21—C27—H27C | 109.5 |
C12—C13—C17 | 117.5 (3) | H27A—C27—H27C | 109.5 |
C25—C13—C17 | 109.8 (3) | H27B—C27—H27C | 109.5 |
C14—C13—C17 | 100.7 (3) | C22—C28—H28A | 109.5 |
C8—C14—C15 | 120.5 (3) | C22—C28—H28B | 109.5 |
C8—C14—C13 | 114.0 (3) | H28A—C28—H28B | 109.5 |
C15—C14—C13 | 105.1 (3) | C22—C28—H28C | 109.5 |
C8—C14—H14 | 105.3 | H28A—C28—H28C | 109.5 |
C15—C14—H14 | 105.3 | H28B—C28—H28C | 109.5 |
C13—C14—H14 | 105.3 | ||
C10—C1—C2—C3 | −56.2 (5) | C8—C9—C10—C5 | −45.5 (4) |
C1—C2—C3—O1 | −178.8 (3) | C11—C9—C10—C5 | −171.4 (3) |
C1—C2—C3—C4 | 55.8 (5) | O4—C9—C11—C12 | −69.0 (4) |
O1—C3—C4—C5 | 178.9 (3) | C8—C9—C11—C12 | 44.0 (5) |
C2—C3—C4—C5 | −55.6 (4) | C10—C9—C11—C12 | 170.8 (4) |
C3—C4—C5—O2 | −63.5 (4) | C9—C11—C12—C13 | −54.7 (5) |
C3—C4—C5—C6 | −179.9 (3) | C11—C12—C13—C25 | −61.0 (5) |
C3—C4—C5—C10 | 55.2 (4) | C11—C12—C13—C14 | 59.0 (5) |
O2—C5—C6—O3 | −106.8 (4) | C11—C12—C13—C17 | 170.6 (4) |
C4—C5—C6—O3 | 11.5 (5) | C7—C8—C14—C15 | −5.1 (6) |
C10—C5—C6—O3 | 138.2 (4) | C9—C8—C14—C15 | 179.3 (3) |
O2—C5—C6—C7 | 70.7 (4) | C7—C8—C14—C13 | −131.5 (4) |
C4—C5—C6—C7 | −170.9 (3) | C9—C8—C14—C13 | 53.0 (4) |
C10—C5—C6—C7 | −44.3 (5) | C12—C13—C14—C8 | −58.9 (4) |
O3—C6—C7—C8 | −169.0 (4) | C25—C13—C14—C8 | 62.3 (5) |
C5—C6—C7—C8 | 13.4 (6) | C17—C13—C14—C8 | 178.2 (3) |
C6—C7—C8—C14 | −173.5 (3) | C12—C13—C14—C15 | 167.1 (3) |
C6—C7—C8—C9 | 1.7 (6) | C25—C13—C14—C15 | −71.7 (4) |
C7—C8—C9—O4 | −106.3 (4) | C17—C13—C14—C15 | 44.1 (4) |
C14—C8—C9—O4 | 69.2 (4) | C8—C14—C15—C16 | −161.5 (3) |
C7—C8—C9—C11 | 141.6 (4) | C13—C14—C15—C16 | −31.2 (4) |
C14—C8—C9—C11 | −42.8 (4) | C14—C15—C16—C17 | 5.9 (4) |
C7—C8—C9—C10 | 15.7 (5) | C15—C16—C17—C18 | 150.7 (4) |
C14—C8—C9—C10 | −168.7 (3) | C15—C16—C17—C13 | 21.1 (4) |
C2—C1—C10—C24 | −64.8 (4) | C12—C13—C17—C18 | 81.5 (5) |
C2—C1—C10—C5 | 53.0 (5) | C25—C13—C17—C18 | −47.9 (5) |
C2—C1—C10—C9 | 172.7 (3) | C14—C13—C17—C18 | −164.0 (4) |
O2—C5—C10—C1 | 67.0 (4) | C12—C13—C17—C16 | −153.8 (4) |
C6—C5—C10—C1 | −179.2 (3) | C25—C13—C17—C16 | 76.8 (4) |
C4—C5—C10—C1 | −52.4 (4) | C14—C13—C17—C16 | −39.3 (4) |
O2—C5—C10—C24 | −173.8 (3) | C16—C17—C18—C19 | 58.6 (5) |
C6—C5—C10—C24 | −60.1 (4) | C13—C17—C18—C19 | 179.4 (4) |
C4—C5—C10—C24 | 66.8 (4) | C16—C17—C18—C26 | −177.3 (4) |
O2—C5—C10—C9 | −54.4 (4) | C13—C17—C18—C26 | −56.5 (6) |
C6—C5—C10—C9 | 59.3 (4) | C26—C18—C19—C20 | 119.0 (6) |
C4—C5—C10—C9 | −173.8 (3) | C17—C18—C19—C20 | −114.6 (6) |
O4—C9—C10—C1 | −46.7 (4) | C18—C19—C20—C21 | 177.8 (5) |
C8—C9—C10—C1 | −165.2 (3) | C19—C20—C21—C22 | 130.0 (7) |
C11—C9—C10—C1 | 68.8 (4) | C19—C20—C21—C27 | −108.7 (8) |
O4—C9—C10—C24 | −169.1 (3) | C20—C21—C22—C23 | 179.5 (6) |
C8—C9—C10—C24 | 72.4 (4) | C27—C21—C22—C23 | 58.5 (9) |
C11—C9—C10—C24 | −53.5 (4) | C20—C21—C22—C28 | −59.1 (8) |
O4—C9—C10—C5 | 73.0 (4) | C27—C21—C22—C28 | 179.8 (6) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O5i | 0.82 | 1.93 | 2.749 (4) | 180 |
O2—H2···O5 | 0.82 | 1.90 | 2.716 (4) | 177 |
O4—H4···O2 | 0.82 | 1.97 | 2.642 (4) | 139 |
O5—H5C···O1ii | 0.85 | 1.81 | 2.642 (4) | 165 |
O5—H5D···O3iii | 0.85 | 1.93 | 2.761 (4) | 165 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, y+1/2, −z+1; (iii) −x+1, y−1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C28H44O4·H2O |
Mr | 462.65 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 298 |
a, b, c (Å) | 6.7605 (8), 7.2626 (11), 28.461 (2) |
β (°) | 96.083 (1) |
V (Å3) | 1389.5 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.40 × 0.35 × 0.17 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.971, 0.988 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7040, 2641, 1557 |
Rint | 0.057 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.108, 1.02 |
No. of reflections | 2641 |
No. of parameters | 304 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.14, −0.15 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP (Siemens, 1994), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O5i | 0.82 | 1.93 | 2.749 (4) | 180 |
O2—H2···O5 | 0.82 | 1.90 | 2.716 (4) | 177 |
O4—H4···O2 | 0.82 | 1.97 | 2.642 (4) | 139 |
O5—H5C···O1ii | 0.85 | 1.81 | 2.642 (4) | 165 |
O5—H5D···O3iii | 0.85 | 1.93 | 2.761 (4) | 165 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, y+1/2, −z+1; (iii) −x+1, y−1/2, −z+1. |
Acknowledgements
This work was supported by grants from the Special Fund for Marine Scientific Research in the Public Interest of China (No. 2010418022–3) and from the PCSIRT (No. IRT0944).
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title ergosterol compound was first isolated from the fungus Polyporus versicolor as a cytotoxic principle to hepatoma cells (Valisolalao et al., 1983). This compound, and other related compounds from different genera of mushrooms, for eg. Bugula neritina L., and endophytic fungi derived from marine red alga, are of interest due to their cytotoxic activity (Kawagishi et al., 1988; Ishizuka et al., 1997; Takaishi et al., 1991; Yaoita et al., 1998; Sun et al., 2006; Tang et al., 2007; Cui et al., 2010). We isolated the title compound as part of our ongoing studies on characterizing bioactive metabolites from marine-derived halotolerant fungi, and we report herein on its crystal structure.
As illustrated in Fig. 1 the title compound is composed of four fused rings, three six-membered and one five-membered, and a side chain in which the terminal methyl groups undergo a certain amount of thermal motion. One of the six-membered rings (C1-C5,C10) adopts a chair conformation, with puckering parameters (Cremer & Pople, 1975) of Q = 0.559 (4) Å, θ = 0.1 (4) ° and ϕ = 109 (19) °, the second six-membered ring (C5-C10) adopts a half-chair conformation, with puckering parameters Q = 0.500 (4) Å, θ = 51.1 (5) ° and ϕ = 326.3 (6) °, while the third six-membered ring (C8,C9,C11-C14) adopts a boat conformation, the puckering parameters are Q = 0.541 (4) Å, θ = 13.1 (4) ° and ϕ = 233 (2) °. The five-membered ring (C13-C17) has an envelope conformation on atom C13 (Baginski et al., 1989; Gonzalez et al., 2002), the corresponding puckering parameters are Q = 0.435 (4) Å and ϕ = 187.6 (6) °.
In the crystal the molecules are linked, via the water molecule of crystallization, by classical O—H···O hydrogen bonds to form a two-dimensional network with base vectors [100] and [010] (Fig. 2 and Table 1).