metal-organic compounds
Bis(2-carboxybenzoato-κO1)bis[1-cyclopropyl-6-fluoro-4-oxo-7-(piperazin-4-ium-1-yl)-1,4-dihydroquinoline-3-carboxylato-κ2O3,O4]manganese(II) dihydrate
aCollege of Chemistry and Chemical Engineering, Southwest University, Chongqing, 400715, People's Republic of China
*Correspondence e-mail: guaiguaijuzi@yahoo.com.cn
The title compound, [Mn(C17H18FN3O3)2(C8H5O4)2]·2H2O or [Mn(cfH)2(1,2-Hbdc)2]·2H2O (cfH = ciprofloxacin = 1-cyclopropyl-6-fluoro-1,4-dihydro-4-oxo-7-(1-piperazinyl)-3-quinoline carboxylic acid, 1,2-bdc = benzene-1,2-dicarboxylate), has been prepared under hydrothermal conditions. The Mn2+ atom, located on an inversion centre, exhibits a distorted octahedral geometry, coordinated by four O atoms from two symmetry-related zwitterionic ciprofloxacin ligands in the equatorial positions and two O atoms of two 1,2-Hbdc ligands in the axial positions. The complex molecules are linked into a two-dimensional network through N—H⋯O and OW—H⋯O hydrogen bonds. A strong intramolecular hydrogen bond between the carboxyl/carboxylate groups of the 1,2-Hbdc anion is also present. The layers are further extended through off-set aromatic π–π stacking interactions of cfH groups [centroid–centroid distance of 3.657 (2) Å] into the final three-dimensional supramolecular arrays.
Related literature
For background to the antibiotic drug ciprofloxacin, see: Turel (2002); Xiao et al. (2005). The mechanisms of action of the quinolone antibacterial agents are either their inhibition of DNA gyrase (Topoisomerase II) or their interaction with the DNA molecule via a metal complex intermediate, see: Chulvi et al. (1991); Ruiz et al. (1993); Wallis et al. (1995). For related structures, see: Fabbiani & Dittrich (2008); Wang et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: RAPID-AUTO (Rigaku, 1998); cell RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811011615/vm2075sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811011615/vm2075Isup2.hkl
A mixture of Mn(OAc)2.4H2O (0.5 mmol), ciprofloxacin hydrochloride (0.25 mmol), 1,2-KHbdc (0.5 mmol), and water (7 ml) was stirred for 30 min in air (solution pH = 4.0), then transferred and sealed in an 18 ml Teflon-lined autoclave, which was heated at 110 °C for 96 h. After slow cooling to room temperature, yellow block crystals were filtered off, washed with distilled water, and dried at ambient temperature.
The structure was solved by
and successive Fourier difference synthesis. The H atoms bonded to C or N atoms were positioned geometrically and refined using a riding model [aromatic C—H = 0.93 Å, aliphatic C—H = 0.97 – 0.98 Å and N—H = 0.90 Å, Uiso(H) = 1.2Ueq(C) and Uiso(H) = 1.2Ueq(N)]. The H atoms bonded to OW atoms were located in a difference Fourier maps and refined with OW—H = 0.84 Å and Uiso(H) = 1.3Ueq(OW).Data collection: RAPID-AUTO (Rigaku, 1998); cell
RAPID-AUTO (Rigaku, 1998); data reduction: RAPID-AUTO (Rigaku, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXS97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. ORTEP drawing of 1 with thermal ellipsoids at 30% probability. Symmetry code (i): -x, -y, -z+1. | |
Fig. 2. Perspective view of the three-dimensional supramolecular network in 1. The hydrogen bonds are indicated by pink dotted lines while the aromatic π—π stacking interaction is indicated by a green dotted line. |
[Mn(C17H18FN3O3)2(C8H5O4)2]·2H2O | F(000) = 1126 |
Mr = 1083.90 | Dx = 1.494 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 22913 reflections |
a = 9.4510 (19) Å | θ = 3.1–27.5° |
b = 22.042 (4) Å | µ = 0.36 mm−1 |
c = 11.695 (2) Å | T = 293 K |
β = 98.44 (3)° | Block, yellow |
V = 2409.9 (8) Å3 | 0.58 × 0.47 × 0.32 mm |
Z = 2 |
Rigaku R-AXIS RAPID IP diffractometer | 5494 independent reflections |
Radiation source: fine-focus sealed tube | 3555 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.068 |
Detector resolution: 100x100 microns pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
Oscillation scans | h = −12→12 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −28→27 |
Tmin = 0.817, Tmax = 0.893 | l = −14→15 |
22913 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.145 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.080P)2] where P = (Fo2 + 2Fc2)/3 |
5494 reflections | (Δ/σ)max < 0.001 |
350 parameters | Δρmax = 0.45 e Å−3 |
10 restraints | Δρmin = −0.36 e Å−3 |
[Mn(C17H18FN3O3)2(C8H5O4)2]·2H2O | V = 2409.9 (8) Å3 |
Mr = 1083.90 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.4510 (19) Å | µ = 0.36 mm−1 |
b = 22.042 (4) Å | T = 293 K |
c = 11.695 (2) Å | 0.58 × 0.47 × 0.32 mm |
β = 98.44 (3)° |
Rigaku R-AXIS RAPID IP diffractometer | 5494 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3555 reflections with I > 2σ(I) |
Tmin = 0.817, Tmax = 0.893 | Rint = 0.068 |
22913 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | 10 restraints |
wR(F2) = 0.145 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.45 e Å−3 |
5494 reflections | Δρmin = −0.36 e Å−3 |
350 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Mn1 | 0.0000 | 0.0000 | 0.5000 | 0.02941 (16) | |
F1 | 0.36711 (17) | −0.03305 (7) | 1.05085 (13) | 0.0405 (4) | |
O1 | −0.3533 (2) | 0.08833 (10) | 0.61415 (16) | 0.0463 (5) | |
OW1 | −0.1255 (4) | 0.13296 (13) | 0.2728 (2) | 0.0820 (9) | |
HW1A | −0.094 (5) | 0.0991 (10) | 0.298 (3) | 0.110* | |
HW1B | −0.138 (5) | 0.1555 (15) | 0.328 (2) | 0.109* | |
O2 | −0.20086 (19) | 0.03315 (9) | 0.53302 (15) | 0.0357 (4) | |
O3 | 0.0395 (2) | −0.00587 (8) | 0.68591 (15) | 0.0343 (4) | |
O4 | 0.0782 (2) | 0.09397 (9) | 0.50461 (18) | 0.0439 (5) | |
O5 | −0.0132 (3) | 0.18400 (11) | 0.5170 (2) | 0.0750 (8) | |
O6 | −0.0126 (4) | 0.26486 (14) | 0.6518 (3) | 0.1005 (12) | |
O7 | 0.0876 (4) | 0.28742 (12) | 0.8236 (3) | 0.0931 (11) | |
N1 | 0.5198 (2) | 0.10018 (9) | 1.39405 (17) | 0.0314 (5) | |
H1A | 0.5482 | 0.1366 | 1.3711 | 0.038* | |
H1B | 0.5652 | 0.0931 | 1.4660 | 0.038* | |
N2 | 0.3244 (2) | 0.06259 (10) | 1.19684 (17) | 0.0305 (5) | |
N3 | −0.0836 (2) | 0.12018 (9) | 0.91028 (17) | 0.0298 (5) | |
C1 | −0.2347 (3) | 0.06311 (11) | 0.6166 (2) | 0.0295 (5) | |
C2 | −0.1306 (3) | 0.06868 (11) | 0.7272 (2) | 0.0276 (5) | |
C3 | −0.0053 (3) | 0.03176 (11) | 0.75371 (19) | 0.0259 (5) | |
C4 | 0.0734 (2) | 0.03979 (11) | 0.8693 (2) | 0.0259 (5) | |
C5 | 0.1887 (3) | 0.00113 (11) | 0.9079 (2) | 0.0286 (5) | |
H5A | 0.2133 | −0.0297 | 0.8601 | 0.034* | |
C6 | 0.2637 (3) | 0.00873 (11) | 1.0142 (2) | 0.0285 (5) | |
C7 | 0.2384 (3) | 0.05589 (11) | 1.0898 (2) | 0.0277 (5) | |
C8 | 0.1208 (3) | 0.09297 (11) | 1.0534 (2) | 0.0298 (5) | |
H8A | 0.0973 | 0.1239 | 1.1015 | 0.036* | |
C9 | 0.0374 (3) | 0.08415 (11) | 0.9447 (2) | 0.0259 (5) | |
C10 | −0.1624 (3) | 0.10961 (12) | 0.8066 (2) | 0.0315 (5) | |
H10A | −0.2456 | 0.1322 | 0.7878 | 0.038* | |
C11 | −0.1357 (3) | 0.16131 (13) | 0.9927 (2) | 0.0404 (6) | |
H11A | −0.1788 | 0.1415 | 1.0542 | 0.048* | |
C12 | −0.0615 (4) | 0.21907 (14) | 1.0259 (3) | 0.0578 (9) | |
H12A | 0.0223 | 0.2289 | 0.9906 | 0.069* | |
H12B | −0.0577 | 0.2326 | 1.1052 | 0.069* | |
C13 | −0.2032 (4) | 0.21968 (15) | 0.9507 (3) | 0.0606 (10) | |
H13A | −0.2854 | 0.2334 | 0.9844 | 0.073* | |
H13B | −0.2054 | 0.2297 | 0.8697 | 0.073* | |
C14 | 0.4800 (3) | 0.06480 (13) | 1.1950 (2) | 0.0358 (6) | |
H14A | 0.5066 | 0.1044 | 1.1691 | 0.043* | |
H14B | 0.5065 | 0.0346 | 1.1416 | 0.043* | |
C15 | 0.5581 (3) | 0.05253 (13) | 1.3150 (2) | 0.0384 (6) | |
H15A | 0.5314 | 0.0130 | 1.3412 | 0.046* | |
H15B | 0.6606 | 0.0527 | 1.3140 | 0.046* | |
C16 | 0.3629 (3) | 0.10097 (13) | 1.3950 (2) | 0.0346 (6) | |
H16A | 0.3392 | 0.1339 | 1.4439 | 0.041* | |
H16B | 0.3341 | 0.0632 | 1.4276 | 0.041* | |
C17 | 0.2812 (3) | 0.10894 (13) | 1.2747 (2) | 0.0349 (6) | |
H17A | 0.1793 | 0.1057 | 1.2772 | 0.042* | |
H17B | 0.2999 | 0.1489 | 1.2457 | 0.042* | |
C18 | 0.0744 (3) | 0.14291 (12) | 0.5553 (2) | 0.0376 (6) | |
C19 | 0.1798 (3) | 0.15346 (11) | 0.6640 (2) | 0.0321 (6) | |
C20 | 0.2873 (3) | 0.10976 (13) | 0.6846 (3) | 0.0399 (6) | |
H20A | 0.2873 | 0.0778 | 0.6327 | 0.048* | |
C21 | 0.3928 (4) | 0.11212 (16) | 0.7781 (3) | 0.0531 (8) | |
H21A | 0.4638 | 0.0826 | 0.7883 | 0.064* | |
C22 | 0.3934 (4) | 0.15842 (18) | 0.8571 (3) | 0.0626 (10) | |
H22A | 0.4640 | 0.1601 | 0.9214 | 0.075* | |
C23 | 0.2886 (4) | 0.20213 (16) | 0.8400 (3) | 0.0573 (9) | |
H23A | 0.2890 | 0.2330 | 0.8943 | 0.069* | |
C24 | 0.1812 (3) | 0.20172 (12) | 0.7437 (2) | 0.0394 (6) | |
C25 | 0.0795 (4) | 0.25462 (14) | 0.7399 (3) | 0.0562 (9) | |
H6 | −0.017 (6) | 0.2366 (18) | 0.602 (4) | 0.13 (2)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Mn1 | 0.0300 (3) | 0.0375 (3) | 0.0188 (3) | 0.0027 (2) | −0.0029 (2) | −0.0051 (2) |
F1 | 0.0374 (8) | 0.0479 (9) | 0.0314 (8) | 0.0147 (7) | −0.0111 (7) | −0.0025 (7) |
O1 | 0.0317 (10) | 0.0791 (15) | 0.0242 (10) | 0.0190 (10) | −0.0087 (8) | −0.0106 (9) |
OW1 | 0.122 (3) | 0.0689 (17) | 0.0486 (16) | 0.0195 (17) | −0.0109 (16) | 0.0000 (13) |
O2 | 0.0290 (9) | 0.0515 (11) | 0.0236 (9) | 0.0050 (8) | −0.0064 (7) | −0.0084 (8) |
O3 | 0.0407 (10) | 0.0397 (10) | 0.0193 (9) | 0.0100 (8) | −0.0059 (7) | −0.0051 (7) |
O4 | 0.0489 (12) | 0.0417 (11) | 0.0405 (12) | −0.0045 (9) | 0.0045 (9) | −0.0119 (8) |
O5 | 0.0855 (19) | 0.0603 (15) | 0.0650 (17) | 0.0255 (14) | −0.0361 (14) | −0.0108 (12) |
O6 | 0.115 (3) | 0.0683 (19) | 0.106 (3) | 0.0507 (19) | −0.027 (2) | −0.0308 (18) |
O7 | 0.152 (3) | 0.0554 (15) | 0.073 (2) | 0.0280 (18) | 0.021 (2) | −0.0228 (14) |
N1 | 0.0332 (11) | 0.0370 (11) | 0.0207 (10) | −0.0053 (9) | −0.0077 (8) | 0.0009 (8) |
N2 | 0.0263 (10) | 0.0451 (12) | 0.0178 (10) | 0.0021 (9) | −0.0045 (8) | −0.0056 (8) |
N3 | 0.0305 (11) | 0.0366 (11) | 0.0204 (10) | 0.0057 (9) | −0.0021 (8) | −0.0045 (8) |
C1 | 0.0260 (12) | 0.0396 (13) | 0.0200 (12) | 0.0012 (10) | −0.0056 (10) | −0.0004 (9) |
C2 | 0.0255 (12) | 0.0378 (13) | 0.0177 (11) | 0.0011 (10) | −0.0032 (9) | −0.0009 (9) |
C3 | 0.0263 (12) | 0.0325 (12) | 0.0171 (11) | −0.0031 (10) | −0.0023 (9) | 0.0015 (9) |
C4 | 0.0241 (11) | 0.0351 (12) | 0.0171 (11) | −0.0007 (10) | −0.0019 (9) | 0.0005 (9) |
C5 | 0.0282 (12) | 0.0336 (12) | 0.0226 (12) | 0.0043 (11) | −0.0015 (9) | −0.0034 (10) |
C6 | 0.0242 (11) | 0.0358 (13) | 0.0242 (12) | 0.0051 (10) | −0.0011 (9) | 0.0029 (9) |
C7 | 0.0247 (12) | 0.0385 (13) | 0.0176 (11) | −0.0020 (10) | −0.0041 (9) | 0.0016 (9) |
C8 | 0.0295 (12) | 0.0390 (13) | 0.0192 (12) | 0.0026 (11) | −0.0019 (10) | −0.0051 (9) |
C9 | 0.0254 (11) | 0.0316 (12) | 0.0193 (11) | 0.0011 (10) | −0.0018 (9) | 0.0000 (9) |
C10 | 0.0268 (12) | 0.0401 (13) | 0.0253 (13) | 0.0049 (11) | −0.0040 (10) | 0.0004 (10) |
C11 | 0.0410 (15) | 0.0462 (16) | 0.0326 (15) | 0.0093 (13) | 0.0010 (12) | −0.0077 (12) |
C12 | 0.068 (2) | 0.0489 (18) | 0.052 (2) | 0.0073 (17) | −0.0037 (17) | −0.0163 (15) |
C13 | 0.073 (2) | 0.0552 (19) | 0.050 (2) | 0.0284 (18) | −0.0030 (18) | −0.0135 (15) |
C14 | 0.0240 (12) | 0.0563 (17) | 0.0253 (13) | −0.0002 (11) | −0.0023 (10) | −0.0054 (11) |
C15 | 0.0285 (13) | 0.0539 (17) | 0.0298 (14) | 0.0020 (12) | −0.0053 (11) | −0.0067 (12) |
C16 | 0.0343 (14) | 0.0467 (15) | 0.0211 (13) | −0.0018 (12) | −0.0011 (11) | −0.0045 (10) |
C17 | 0.0279 (12) | 0.0505 (15) | 0.0235 (13) | 0.0024 (11) | −0.0050 (10) | −0.0080 (11) |
C18 | 0.0369 (14) | 0.0368 (14) | 0.0389 (16) | −0.0007 (12) | 0.0046 (12) | −0.0013 (11) |
C19 | 0.0358 (14) | 0.0326 (13) | 0.0288 (13) | −0.0023 (11) | 0.0075 (11) | −0.0012 (10) |
C20 | 0.0406 (15) | 0.0419 (15) | 0.0373 (16) | 0.0048 (12) | 0.0062 (12) | 0.0008 (12) |
C21 | 0.0460 (18) | 0.063 (2) | 0.0484 (19) | 0.0104 (16) | 0.0003 (15) | 0.0069 (15) |
C22 | 0.056 (2) | 0.083 (3) | 0.0423 (19) | −0.0044 (19) | −0.0149 (16) | −0.0008 (17) |
C23 | 0.066 (2) | 0.058 (2) | 0.046 (2) | −0.0099 (17) | 0.0002 (17) | −0.0156 (15) |
C24 | 0.0456 (16) | 0.0369 (14) | 0.0355 (15) | −0.0026 (13) | 0.0052 (13) | −0.0046 (11) |
C25 | 0.078 (3) | 0.0341 (16) | 0.058 (2) | 0.0072 (16) | 0.0164 (19) | −0.0045 (14) |
Mn1—O2 | 2.1219 (18) | C6—C7 | 1.408 (3) |
Mn1—O2i | 2.1219 (18) | C7—C8 | 1.394 (3) |
Mn1—O3 | 2.1552 (17) | C8—C9 | 1.408 (3) |
Mn1—O3i | 2.1552 (17) | C8—H8A | 0.9300 |
Mn1—O4 | 2.1971 (19) | C10—H10A | 0.9300 |
Mn1—O4i | 2.1971 (19) | C11—C12 | 1.478 (4) |
F1—C6 | 1.365 (3) | C11—C13 | 1.488 (4) |
O1—C1 | 1.247 (3) | C11—H11A | 0.9800 |
OW1—HW1A | 0.84 (3) | C12—C13 | 1.491 (5) |
OW1—HW1B | 0.84 (3) | C12—H12A | 0.9700 |
O2—C1 | 1.259 (3) | C12—H12B | 0.9700 |
O3—C3 | 1.263 (3) | C13—H13A | 0.9700 |
O4—C18 | 1.234 (3) | C13—H13B | 0.9700 |
O5—C18 | 1.264 (4) | C14—C15 | 1.510 (4) |
O6—C25 | 1.268 (5) | C14—H14A | 0.9700 |
O6—H6 | 0.85 (4) | C14—H14B | 0.9700 |
O7—C25 | 1.210 (4) | C15—H15A | 0.9700 |
N1—C15 | 1.480 (3) | C15—H15B | 0.9700 |
N1—C16 | 1.485 (3) | C16—C17 | 1.513 (3) |
N1—H1A | 0.9000 | C16—H16A | 0.9700 |
N1—H1B | 0.9000 | C16—H16B | 0.9700 |
N2—C7 | 1.396 (3) | C17—H17A | 0.9700 |
N2—C17 | 1.466 (3) | C17—H17B | 0.9700 |
N2—C14 | 1.475 (3) | C18—C19 | 1.514 (4) |
N3—C10 | 1.346 (3) | C19—C20 | 1.395 (4) |
N3—C9 | 1.402 (3) | C19—C24 | 1.413 (4) |
N3—C11 | 1.460 (3) | C20—C21 | 1.369 (4) |
C1—C2 | 1.511 (3) | C20—H20A | 0.9300 |
C2—C10 | 1.360 (3) | C21—C22 | 1.376 (5) |
C2—C3 | 1.433 (3) | C21—H21A | 0.9300 |
C3—C4 | 1.455 (3) | C22—C23 | 1.375 (5) |
C4—C9 | 1.392 (3) | C22—H22A | 0.9300 |
C4—C5 | 1.405 (3) | C23—C24 | 1.402 (4) |
C5—C6 | 1.349 (3) | C23—H23A | 0.9300 |
C5—H5A | 0.9300 | C24—C25 | 1.508 (4) |
O2—Mn1—O2i | 180.00 (9) | C12—C11—C13 | 60.4 (2) |
O2—Mn1—O3 | 82.19 (7) | N3—C11—H11A | 115.1 |
O2i—Mn1—O3 | 97.81 (7) | C12—C11—H11A | 115.1 |
O2—Mn1—O3i | 97.81 (7) | C13—C11—H11A | 115.1 |
O2i—Mn1—O3i | 82.19 (7) | C11—C12—C13 | 60.2 (2) |
O3—Mn1—O3i | 180.0 | C11—C12—H12A | 117.8 |
O2—Mn1—O4 | 88.72 (8) | C13—C12—H12A | 117.8 |
O2i—Mn1—O4 | 91.28 (8) | C11—C12—H12B | 117.8 |
O3—Mn1—O4 | 91.37 (7) | C13—C12—H12B | 117.8 |
O3i—Mn1—O4 | 88.63 (7) | H12A—C12—H12B | 114.9 |
O2—Mn1—O4i | 91.28 (8) | C11—C13—C12 | 59.5 (2) |
O2i—Mn1—O4i | 88.72 (8) | C11—C13—H13A | 117.8 |
O3—Mn1—O4i | 88.63 (7) | C12—C13—H13A | 117.8 |
O3i—Mn1—O4i | 91.37 (7) | C11—C13—H13B | 117.8 |
O4—Mn1—O4i | 180.0 | C12—C13—H13B | 117.8 |
HW1A—OW1—HW1B | 109.7 (18) | H13A—C13—H13B | 115.0 |
C1—O2—Mn1 | 131.15 (16) | N2—C14—C15 | 109.5 (2) |
C3—O3—Mn1 | 124.73 (15) | N2—C14—H14A | 109.8 |
C18—O4—Mn1 | 143.4 (2) | C15—C14—H14A | 109.8 |
C25—O6—H6 | 113 (4) | N2—C14—H14B | 109.8 |
C15—N1—C16 | 110.5 (2) | C15—C14—H14B | 109.8 |
C15—N1—H1A | 109.6 | H14A—C14—H14B | 108.2 |
C16—N1—H1A | 109.6 | N1—C15—C14 | 108.8 (2) |
C15—N1—H1B | 109.6 | N1—C15—H15A | 109.9 |
C16—N1—H1B | 109.6 | C14—C15—H15A | 109.9 |
H1A—N1—H1B | 108.1 | N1—C15—H15B | 109.9 |
C7—N2—C17 | 116.8 (2) | C14—C15—H15B | 109.9 |
C7—N2—C14 | 116.2 (2) | H15A—C15—H15B | 108.3 |
C17—N2—C14 | 110.8 (2) | N1—C16—C17 | 111.6 (2) |
C10—N3—C9 | 118.7 (2) | N1—C16—H16A | 109.3 |
C10—N3—C11 | 120.4 (2) | C17—C16—H16A | 109.3 |
C9—N3—C11 | 120.1 (2) | N1—C16—H16B | 109.3 |
O1—C1—O2 | 123.1 (2) | C17—C16—H16B | 109.3 |
O1—C1—C2 | 116.9 (2) | H16A—C16—H16B | 108.0 |
O2—C1—C2 | 120.0 (2) | N2—C17—C16 | 110.2 (2) |
C10—C2—C3 | 119.2 (2) | N2—C17—H17A | 109.6 |
C10—C2—C1 | 117.3 (2) | C16—C17—H17A | 109.6 |
C3—C2—C1 | 123.5 (2) | N2—C17—H17B | 109.6 |
O3—C3—C2 | 125.5 (2) | C16—C17—H17B | 109.6 |
O3—C3—C4 | 119.4 (2) | H17A—C17—H17B | 108.1 |
C2—C3—C4 | 115.2 (2) | O4—C18—O5 | 121.3 (3) |
C9—C4—C5 | 118.2 (2) | O4—C18—C19 | 118.4 (2) |
C9—C4—C3 | 122.3 (2) | O5—C18—C19 | 120.3 (2) |
C5—C4—C3 | 119.4 (2) | C20—C19—C24 | 118.1 (3) |
C6—C5—C4 | 119.9 (2) | C20—C19—C18 | 114.3 (2) |
C6—C5—H5A | 120.0 | C24—C19—C18 | 127.6 (2) |
C4—C5—H5A | 120.0 | C21—C20—C19 | 122.5 (3) |
C5—C6—F1 | 117.4 (2) | C21—C20—H20A | 118.7 |
C5—C6—C7 | 123.8 (2) | C19—C20—H20A | 118.7 |
F1—C6—C7 | 118.8 (2) | C20—C21—C22 | 119.7 (3) |
C8—C7—N2 | 123.0 (2) | C20—C21—H21A | 120.2 |
C8—C7—C6 | 116.3 (2) | C22—C21—H21A | 120.2 |
N2—C7—C6 | 120.7 (2) | C23—C22—C21 | 119.4 (3) |
C7—C8—C9 | 120.7 (2) | C23—C22—H22A | 120.3 |
C7—C8—H8A | 119.7 | C21—C22—H22A | 120.3 |
C9—C8—H8A | 119.7 | C22—C23—C24 | 122.2 (3) |
C4—C9—N3 | 118.7 (2) | C22—C23—H23A | 118.9 |
C4—C9—C8 | 120.8 (2) | C24—C23—H23A | 118.9 |
N3—C9—C8 | 120.4 (2) | C23—C24—C19 | 118.0 (3) |
N3—C10—C2 | 125.6 (2) | C23—C24—C25 | 113.7 (3) |
N3—C10—H10A | 117.2 | C19—C24—C25 | 128.3 (3) |
C2—C10—H10A | 117.2 | O7—C25—O6 | 120.4 (4) |
N3—C11—C12 | 121.0 (3) | O7—C25—C24 | 118.3 (4) |
N3—C11—C13 | 119.2 (3) | O6—C25—C24 | 121.3 (3) |
O2i—Mn1—O2—C1 | −97 (100) | C5—C4—C9—C8 | 4.6 (4) |
O3—Mn1—O2—C1 | 31.5 (2) | C3—C4—C9—C8 | −176.3 (2) |
O3i—Mn1—O2—C1 | −148.5 (2) | C10—N3—C9—C4 | 1.5 (3) |
O4—Mn1—O2—C1 | −60.0 (2) | C11—N3—C9—C4 | 171.6 (2) |
O4i—Mn1—O2—C1 | 120.0 (2) | C10—N3—C9—C8 | −178.7 (2) |
O2—Mn1—O3—C3 | −36.48 (19) | C11—N3—C9—C8 | −8.6 (4) |
O2i—Mn1—O3—C3 | 143.52 (19) | C7—C8—C9—C4 | −2.5 (4) |
O3i—Mn1—O3—C3 | −147 (100) | C7—C8—C9—N3 | 177.7 (2) |
O4—Mn1—O3—C3 | 52.0 (2) | C9—N3—C10—C2 | −4.1 (4) |
O4i—Mn1—O3—C3 | −128.0 (2) | C11—N3—C10—C2 | −174.2 (3) |
O2—Mn1—O4—C18 | 39.5 (3) | C3—C2—C10—N3 | 1.5 (4) |
O2i—Mn1—O4—C18 | −140.5 (3) | C1—C2—C10—N3 | 179.1 (2) |
O3—Mn1—O4—C18 | −42.7 (3) | C10—N3—C11—C12 | −114.2 (3) |
O3i—Mn1—O4—C18 | 137.3 (3) | C9—N3—C11—C12 | 75.8 (3) |
O4i—Mn1—O4—C18 | −161 (100) | C10—N3—C11—C13 | −43.1 (4) |
Mn1—O2—C1—O1 | 167.0 (2) | C9—N3—C11—C13 | 146.9 (3) |
Mn1—O2—C1—C2 | −14.3 (4) | N3—C11—C12—C13 | 108.3 (3) |
O1—C1—C2—C10 | −12.1 (4) | N3—C11—C13—C12 | −111.2 (3) |
O2—C1—C2—C10 | 169.1 (2) | C7—N2—C14—C15 | −162.5 (2) |
O1—C1—C2—C3 | 165.3 (2) | C17—N2—C14—C15 | 61.0 (3) |
O2—C1—C2—C3 | −13.4 (4) | C16—N1—C15—C14 | 58.7 (3) |
Mn1—O3—C3—C2 | 26.7 (3) | N2—C14—C15—N1 | −61.2 (3) |
Mn1—O3—C3—C4 | −153.29 (17) | C15—N1—C16—C17 | −55.8 (3) |
C10—C2—C3—O3 | −176.6 (2) | C7—N2—C17—C16 | 167.0 (2) |
C1—C2—C3—O3 | 5.9 (4) | C14—N2—C17—C16 | −56.8 (3) |
C10—C2—C3—C4 | 3.4 (3) | N1—C16—C17—N2 | 54.2 (3) |
C1—C2—C3—C4 | −174.0 (2) | Mn1—O4—C18—O5 | −95.6 (4) |
O3—C3—C4—C9 | 174.2 (2) | Mn1—O4—C18—C19 | 85.7 (4) |
C2—C3—C4—C9 | −5.8 (3) | O4—C18—C19—C20 | 10.4 (4) |
O3—C3—C4—C5 | −6.8 (3) | O5—C18—C19—C20 | −168.3 (3) |
C2—C3—C4—C5 | 173.2 (2) | O4—C18—C19—C24 | −170.2 (3) |
C9—C4—C5—C6 | −1.9 (4) | O5—C18—C19—C24 | 11.1 (5) |
C3—C4—C5—C6 | 179.0 (2) | C24—C19—C20—C21 | −0.1 (4) |
C4—C5—C6—F1 | 174.8 (2) | C18—C19—C20—C21 | 179.4 (3) |
C4—C5—C6—C7 | −3.2 (4) | C19—C20—C21—C22 | 1.2 (5) |
C17—N2—C7—C8 | 3.5 (4) | C20—C21—C22—C23 | −0.8 (5) |
C14—N2—C7—C8 | −130.4 (3) | C21—C22—C23—C24 | −0.8 (6) |
C17—N2—C7—C6 | −173.9 (2) | C22—C23—C24—C19 | 1.9 (5) |
C14—N2—C7—C6 | 52.3 (3) | C22—C23—C24—C25 | −178.4 (3) |
C5—C6—C7—C8 | 5.3 (4) | C20—C19—C24—C23 | −1.4 (4) |
F1—C6—C7—C8 | −172.7 (2) | C18—C19—C24—C23 | 179.2 (3) |
C5—C6—C7—N2 | −177.2 (2) | C20—C19—C24—C25 | 178.9 (3) |
F1—C6—C7—N2 | 4.8 (4) | C18—C19—C24—C25 | −0.5 (5) |
N2—C7—C8—C9 | −179.8 (2) | C23—C24—C25—O7 | −8.7 (5) |
C6—C7—C8—C9 | −2.4 (4) | C19—C24—C25—O7 | 171.0 (3) |
C5—C4—C9—N3 | −175.6 (2) | C23—C24—C25—O6 | 171.3 (4) |
C3—C4—C9—N3 | 3.5 (4) | C19—C24—C25—O6 | −9.0 (6) |
Symmetry code: (i) −x, −y, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
OW1—HW1B···O5 | 0.84 (3) | 2.43 (3) | 3.108 (4) | 139 (4) |
N1—H1A···O7ii | 0.90 | 1.82 | 2.717 (3) | 174 |
N1—H1B···O1iii | 0.90 | 1.79 | 2.688 (3) | 173 |
N1—H1B···O2iii | 0.90 | 2.60 | 3.246 (3) | 130 |
OW1—HW1A···O3i | 0.84 (3) | 2.12 (1) | 2.937 (3) | 164 (4) |
O6—H6···O5 | 0.85 (4) | 1.53 (4) | 2.379 (4) | 175 (8) |
Symmetry codes: (i) −x, −y, −z+1; (ii) x+1/2, −y+1/2, z+1/2; (iii) x+1, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | [Mn(C17H18FN3O3)2(C8H5O4)2]·2H2O |
Mr | 1083.90 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 9.4510 (19), 22.042 (4), 11.695 (2) |
β (°) | 98.44 (3) |
V (Å3) | 2409.9 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.36 |
Crystal size (mm) | 0.58 × 0.47 × 0.32 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID IP diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.817, 0.893 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22913, 5494, 3555 |
Rint | 0.068 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.145, 1.00 |
No. of reflections | 5494 |
No. of parameters | 350 |
No. of restraints | 10 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.45, −0.36 |
Computer programs: RAPID-AUTO (Rigaku, 1998), SHELXS97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
OW1—HW1B···O5 | 0.84 (3) | 2.43 (3) | 3.108 (4) | 139 (4) |
N1—H1A···O7i | 0.90 | 1.82 | 2.717 (3) | 174.4 |
N1—H1B···O1ii | 0.90 | 1.79 | 2.688 (3) | 172.6 |
N1—H1B···O2ii | 0.90 | 2.60 | 3.246 (3) | 129.7 |
OW1—HW1A···O3iii | 0.84 (3) | 2.122 (14) | 2.937 (3) | 164 (4) |
O6—H6···O5 | 0.85 (4) | 1.53 (4) | 2.379 (4) | 175 (8) |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) x+1, y, z+1; (iii) −x, −y, −z+1. |
Acknowledgements
This work was supported by the Science and Technology Foundation of Southwest University (SWUB2007035).
References
Chulvi, C., Muñoz, M. C., Perelló, L., Ortiz, R., Arriortua, M. I., Via, J., Urtiaga, K., Amigó, J. M. & Ochando, L. E. (1991). J. Inorg. Biochem. 42, 133–138. CrossRef CAS Google Scholar
Fabbiani, F. P. A. & Dittrich, B. (2008). Acta Cryst. E64, o2354–o2355. Web of Science CSD CrossRef IUCr Journals Google Scholar
Rigaku (1998). RAPID-AUTO. Rigaku Corporation, Tokyo, Japan. Google Scholar
Ruiz, M., Ortiz, R., Perello, L., Castñeiras, A. & Quirós, M. (1993). Inorg. Chim. Acta, 211, 133–139. CrossRef CAS Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Turel, I. (2002). Coord. Chem. Rev. 232, 27–47. Web of Science CrossRef CAS Google Scholar
Wallis, S. C., Gahan, L. R., Charles, B. G. & Hambley, T. W. (1995). Polyhedron, 14, 2835–2840. CSD CrossRef CAS Web of Science Google Scholar
Wang, Y.-J., Wang, N., Hu, R.-D., Lin, Q.-Y. & Wang, Y.-Y. (2009). Acta Cryst. E65, m783. Web of Science CSD CrossRef IUCr Journals Google Scholar
Xiao, D. R., Wang, E. B., An, H. Y., Su, Z. M., Li, Y. G., Gao, L., Sun, C. Y. & Lin, X. (2005). Chem. Eur. J. 11, 6673–6686. CrossRef PubMed CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Ciprofloxacin [cfH = 1-cyclopropyl-6-fluoro-1,4-dihydro-4-oxo-7-(1-piperazinyl)-3-quinoline carboxylic acid] belongs to the quinolone family of synthetic antibiotics (Turel, 2002; Xiao et al., 2005) and is a third generation quinolone antibacterial drug with broad-spectrum antibacterial activity (especially aerobic gram-negative bacilli high antibacterial activity). The mechanisms of action of the quinolone antibacterial agents are either their inhibition of DNA gyrase (Topoisomerase II), an essential bacterial enzyme that maintains superhelical twists in DNA, or their interaction with the DNA molecule via a metal complex intermediate (Chulvi et al., 1991; Ruiz et al., 1993; Wallis et al., 1995).
The Ciprofloxacin and its deprotonated anions can show a number of different coordinating or bridging modes. The title complex consists of a Mn2+ atom lying on an inversion center, two Ciprofloxacin ligands, two 1,2-benzenedicarboxylate ligands (1,2-bdc) and a water molecule (Fig. 1). The Ciprofloxacin ligand acts as chelating bidentate and the Mn(II) atom is coordinated by four oxygen atoms from two different Ciprofloxacin ligands and two oxygen atoms from two 1,2-bdc ligands. The N—H···O and OW—H···O hydrogen bonds link the discrete molecules into two-dimensional arrays (Table 1). These two-dimensional layers are further extended through off-set aromatic π—π stacking interplanar of cfH groups (centroid distance of 3.657 Å) into the final three-dimensional supramolecular arrays (Fig. 2).