organic compounds
Ethyl 1-benzyl-1,2,3,3a,4,10b-hexahydropyrrolo[2′,3′:3,4]pyrrolo[1,2-a]benzimidazole-2-carboxylate
aDepartment of Chemistry, University of California, One Shields Avenue, Davis, CA 95616, USA
*Correspondence e-mail: mjkurth@ucdavis.edu
The title molecule, C22H23N3O2, was obtained via an intramolecular cycloaddition of an azomethine ylide and an alkene tethered by a benzimidazole unit. The benzoimidazole unit is essentially planar, with an r.m.s. deviation of 0.0087 Å from the nine constituent atoms. It has a cis fusion of the two pyrrolidine rings as well as a cis ester appendage. The two pyrrolidine rings rings have envelope conformations. The crystal packing is stabilized by aromatic π–π stacking of parallel benzimidazole ring systems, with a centroid-to-centroid distance of 3.518 (6) Å. Weak intermolecular C—H⋯O contacts may also play a role in the stability of the packing.
Related literature
Polycyclic nitrogen-containing heterocycles form the basic skeleton of numerous ). Conformational studies have been reported for related pyrrolidino[3,4-b]pyrrolidine-2-carboxylates obtained from intramolecular cycloaddition of see: Cheng et al. (2001); Meng et al. (2007). For related literature on the pharmaceutical properties of benzimidazole and pyrrolidine, see: Gudmundsson et al. (2000); Hamilton & Steiner (1997). For related literature on the azomethine ylide in similar systems, Pedrosa et al. (2006); Yang et al. (2006).
and physiologically active compounds, see: Southon & Buckingham (1989Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2002); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL/PC (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536811014292/wn2427sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811014292/wn2427Isup2.hkl
The title compound was prepared from 1-allyl-1H-benzimidazole-2-carbaldehyde, N-benzylglycine ethyl ester hydrochloride, and triethylamine according to the procedure reported by Meng et al. (2007). Colourless blocks of the title compound were obtained by recrystallization from EtOAc/n-hexane 1:1 with slow evaporation at room temperature. These crystals were suitable for X-ray crystallography.
H atoms were located directly in a difference Fourier map and then allowed to refine freely throughout the final convergence stage. The final structure was refined to convergence [Δ/σ ≤ 0.001]. The final difference Fourier map was featureless, indicating that the structure is both correct and complete.
Data collection: SMART (Bruker, 2002); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL/PC (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C22H23N3O2 | F(000) = 768 |
Mr = 361.43 | Dx = 1.313 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 7133 reflections |
a = 9.2498 (5) Å | θ = 2.6–27.5° |
b = 13.8999 (7) Å | µ = 0.09 mm−1 |
c = 14.2258 (7) Å | T = 90 K |
β = 90.345 (1)° | Block, colourless |
V = 1829.00 (16) Å3 | 0.39 × 0.16 × 0.13 mm |
Z = 4 |
Bruker SMART1000 CCD area-detector diffractometer | 4194 independent reflections |
Radiation source: fine-focus sealed tube | 3080 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.037 |
ω and ϕ scans | θmax = 27.5°, θmin = 2.1° |
Absorption correction: numerical (SADABS; Blessing, 1995; Sheldrick, 2007) | h = −12→12 |
Tmin = 0.962, Tmax = 0.989 | k = −18→18 |
16147 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.095 | All H-atom parameters refined |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0417P)2 + 0.3839P] where P = (Fo2 + 2Fc2)/3 |
4194 reflections | (Δ/σ)max = 0.001 |
336 parameters | Δρmax = 0.37 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
C22H23N3O2 | V = 1829.00 (16) Å3 |
Mr = 361.43 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.2498 (5) Å | µ = 0.09 mm−1 |
b = 13.8999 (7) Å | T = 90 K |
c = 14.2258 (7) Å | 0.39 × 0.16 × 0.13 mm |
β = 90.345 (1)° |
Bruker SMART1000 CCD area-detector diffractometer | 4194 independent reflections |
Absorption correction: numerical (SADABS; Blessing, 1995; Sheldrick, 2007) | 3080 reflections with I > 2σ(I) |
Tmin = 0.962, Tmax = 0.989 | Rint = 0.037 |
16147 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.095 | All H-atom parameters refined |
S = 1.09 | Δρmax = 0.37 e Å−3 |
4194 reflections | Δρmin = −0.27 e Å−3 |
336 parameters |
Experimental. A colourless block with approximate orthogonal dimensions 0.39 × 0.16 × 0.13 mm3 was placed and optically centered on the Bruker SMART1000 CCD system at -183°C. The initial unit cell was indexed using a least-squares analysis of a random set of reflections collected from three series of 0.3° wide ω scans, 10 s per frame, and 25 frames per series that were well distributed in reciprocal space. Four ω-scan data frame series were collected [Mo Kα] with 0.3° wide scans, 30 s per frame and 606, 435, 606, 435 frames collected per series at varying ϕ angles (ϕ = 0°, 90°, 180°, 270°), respectively. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. The crystal to detector distance was 4.123 cm, thus providing a complete sphere of data to 2θmax = 55.06°. A total of 23465 reflections were collected and corrected for Lorentz and polarization effects and absorption using Blessing's method (Blessing, 1995) as incorporated into the program SADABS with 4390 unique. All crystallographic calculations were performed on a personal computer (PC) with a Pentium 3.20 GHz processor and 1 GB of extended memory. The SHELXTL program package was implemented to determine the probable space group and set up the initial files. System symmetry, systematic absences and intensity statistics indicated the centrosymmetric monoclinic non-standard space group P21/n (No. 14). The structure was determined by direct methods with the successful location of a majority of the molecule within the asymmetric unit using the program XS. The structure was refined with XL. The 23465 data collected were merged based upon identical indices yielding 16536 data [R(int) = 0.0245] that were truncated to 2θmax = 55.0° resulting in 16147 data that were further merged during least-squares refinement to 4194 unique data [R(int) = 0.0373]. A single least-squares difference Fourier cycle was required to locate the remaining non-H atoms. All non-H atoms were refined anisotropically. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.11370 (13) | 0.83406 (9) | 0.93388 (9) | 0.0171 (3) | |
H1 | 0.1841 (15) | 0.8014 (10) | 0.8905 (10) | 0.016 (3)* | |
N1 | −0.03076 (11) | 0.79245 (7) | 0.92753 (7) | 0.0167 (2) | |
C2A | −0.02373 (14) | 0.70281 (9) | 0.98214 (9) | 0.0168 (3) | |
H2A | −0.1230 (16) | 0.6828 (10) | 0.9972 (10) | 0.021 (4)* | |
C2B | 0.05845 (13) | 0.61970 (9) | 0.93939 (9) | 0.0164 (3) | |
N2 | 0.04725 (11) | 0.56851 (8) | 0.86159 (7) | 0.0188 (2) | |
C3A | 0.15526 (14) | 0.49885 (9) | 0.87233 (9) | 0.0178 (3) | |
C4 | 0.19276 (15) | 0.42310 (10) | 0.81285 (9) | 0.0215 (3) | |
H4 | 0.1418 (16) | 0.4118 (10) | 0.7547 (11) | 0.024 (4)* | |
C5 | 0.30288 (15) | 0.36208 (10) | 0.84115 (10) | 0.0239 (3) | |
H5 | 0.3296 (16) | 0.3071 (11) | 0.8029 (11) | 0.024 (4)* | |
C6 | 0.37646 (15) | 0.37548 (10) | 0.92687 (10) | 0.0231 (3) | |
H6 | 0.4508 (16) | 0.3301 (11) | 0.9460 (10) | 0.025 (4)* | |
C7 | 0.34082 (14) | 0.44980 (10) | 0.98730 (10) | 0.0205 (3) | |
H7 | 0.3892 (16) | 0.4588 (10) | 1.0466 (11) | 0.023 (4)* | |
C8A | 0.22957 (14) | 0.51062 (9) | 0.95859 (9) | 0.0176 (3) | |
N8 | 0.16544 (11) | 0.58997 (8) | 0.99883 (7) | 0.0173 (2) | |
C9 | 0.16669 (15) | 0.63878 (10) | 1.08991 (9) | 0.0191 (3) | |
H9A | 0.2688 (16) | 0.6555 (10) | 1.1086 (10) | 0.021 (4)* | |
H9B | 0.1242 (15) | 0.5967 (10) | 1.1379 (10) | 0.022 (4)* | |
C10A | 0.07245 (14) | 0.72792 (9) | 1.06910 (9) | 0.0180 (3) | |
H10A | 0.0137 (14) | 0.7435 (9) | 1.1239 (10) | 0.013 (3)* | |
C11 | 0.15928 (15) | 0.81681 (10) | 1.03687 (9) | 0.0193 (3) | |
H11A | 0.2653 (18) | 0.8059 (11) | 1.0440 (11) | 0.029 (4)* | |
H11B | 0.1335 (16) | 0.8755 (11) | 1.0745 (11) | 0.025 (4)* | |
C12 | 0.11502 (14) | 0.93996 (9) | 0.90881 (9) | 0.0182 (3) | |
O12 | 0.01249 (10) | 0.98789 (7) | 0.88602 (7) | 0.0248 (2) | |
C13 | 0.27147 (16) | 1.07485 (10) | 0.89143 (10) | 0.0225 (3) | |
H13A | 0.2190 (16) | 1.1145 (11) | 0.9382 (11) | 0.023 (4)* | |
H13B | 0.2268 (16) | 1.0867 (10) | 0.8302 (11) | 0.022 (4)* | |
O13 | 0.25101 (10) | 0.97384 (6) | 0.91573 (6) | 0.0201 (2) | |
C14 | 0.43191 (16) | 1.09273 (11) | 0.89238 (11) | 0.0251 (3) | |
H14A | 0.4769 (18) | 1.0798 (12) | 0.9539 (13) | 0.037 (5)* | |
H14B | 0.4516 (18) | 1.1615 (13) | 0.8784 (11) | 0.038 (5)* | |
H14C | 0.4819 (17) | 1.0527 (12) | 0.8441 (12) | 0.035 (4)* | |
C15 | −0.08571 (14) | 0.78122 (10) | 0.83087 (9) | 0.0179 (3) | |
H15A | −0.0297 (15) | 0.7327 (10) | 0.7948 (10) | 0.018 (4)* | |
H15B | −0.0739 (15) | 0.8460 (11) | 0.8007 (10) | 0.018 (4)* | |
C16 | −0.24288 (14) | 0.75165 (9) | 0.82970 (9) | 0.0178 (3) | |
C17 | −0.28700 (15) | 0.66465 (10) | 0.79108 (9) | 0.0205 (3) | |
H17 | −0.2161 (17) | 0.6209 (11) | 0.7651 (11) | 0.030 (4)* | |
C18 | −0.43276 (15) | 0.63824 (10) | 0.79093 (9) | 0.0228 (3) | |
H18 | −0.4629 (16) | 0.5773 (11) | 0.7644 (11) | 0.027 (4)* | |
C19 | −0.53434 (15) | 0.69891 (11) | 0.83067 (9) | 0.0232 (3) | |
H19 | −0.6361 (17) | 0.6801 (11) | 0.8303 (10) | 0.024 (4)* | |
C20 | −0.49157 (15) | 0.78651 (10) | 0.86906 (9) | 0.0224 (3) | |
H20 | −0.5630 (16) | 0.8300 (11) | 0.8959 (10) | 0.022 (4)* | |
C21 | −0.34683 (14) | 0.81280 (10) | 0.86831 (9) | 0.0205 (3) | |
H21 | −0.3146 (16) | 0.8746 (11) | 0.8952 (10) | 0.022 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0135 (6) | 0.0187 (6) | 0.0189 (6) | 0.0002 (5) | 0.0018 (5) | −0.0014 (5) |
N1 | 0.0149 (5) | 0.0182 (6) | 0.0170 (5) | −0.0009 (4) | −0.0002 (4) | 0.0011 (4) |
C2A | 0.0146 (6) | 0.0196 (7) | 0.0161 (6) | −0.0012 (5) | 0.0012 (5) | 0.0005 (5) |
C2B | 0.0145 (6) | 0.0186 (6) | 0.0162 (6) | −0.0027 (5) | 0.0009 (5) | 0.0025 (5) |
N2 | 0.0194 (6) | 0.0191 (6) | 0.0180 (5) | 0.0006 (4) | 0.0011 (4) | 0.0000 (4) |
C3A | 0.0165 (6) | 0.0193 (6) | 0.0177 (6) | −0.0013 (5) | 0.0030 (5) | 0.0042 (5) |
C4 | 0.0244 (7) | 0.0236 (7) | 0.0164 (7) | −0.0002 (6) | 0.0044 (5) | 0.0006 (5) |
C5 | 0.0251 (7) | 0.0226 (7) | 0.0242 (7) | 0.0017 (6) | 0.0096 (6) | 0.0001 (6) |
C6 | 0.0172 (7) | 0.0221 (7) | 0.0300 (8) | 0.0013 (6) | 0.0049 (6) | 0.0053 (6) |
C7 | 0.0159 (7) | 0.0225 (7) | 0.0230 (7) | −0.0026 (5) | 0.0004 (5) | 0.0050 (5) |
C8A | 0.0173 (6) | 0.0179 (6) | 0.0177 (6) | −0.0027 (5) | 0.0028 (5) | 0.0026 (5) |
N8 | 0.0170 (6) | 0.0184 (5) | 0.0165 (5) | −0.0004 (4) | −0.0005 (4) | 0.0013 (4) |
C9 | 0.0207 (7) | 0.0208 (7) | 0.0157 (6) | −0.0023 (5) | −0.0014 (5) | −0.0002 (5) |
C10A | 0.0179 (6) | 0.0216 (7) | 0.0146 (6) | −0.0013 (5) | 0.0022 (5) | −0.0014 (5) |
C11 | 0.0194 (7) | 0.0182 (7) | 0.0204 (7) | −0.0005 (5) | −0.0029 (5) | 0.0004 (5) |
C12 | 0.0187 (7) | 0.0213 (7) | 0.0146 (6) | 0.0013 (5) | 0.0022 (5) | −0.0021 (5) |
O12 | 0.0232 (5) | 0.0226 (5) | 0.0284 (5) | 0.0044 (4) | −0.0022 (4) | 0.0015 (4) |
C13 | 0.0289 (8) | 0.0154 (7) | 0.0233 (7) | −0.0024 (6) | −0.0026 (6) | 0.0023 (5) |
O13 | 0.0207 (5) | 0.0161 (5) | 0.0235 (5) | −0.0020 (4) | 0.0003 (4) | 0.0015 (4) |
C14 | 0.0297 (8) | 0.0199 (7) | 0.0257 (8) | −0.0066 (6) | −0.0002 (6) | 0.0008 (6) |
C15 | 0.0159 (6) | 0.0221 (7) | 0.0156 (6) | 0.0008 (5) | 0.0010 (5) | 0.0000 (5) |
C16 | 0.0173 (7) | 0.0229 (7) | 0.0130 (6) | 0.0012 (5) | −0.0013 (5) | 0.0031 (5) |
C17 | 0.0201 (7) | 0.0248 (7) | 0.0164 (6) | 0.0032 (6) | −0.0009 (5) | 0.0009 (5) |
C18 | 0.0242 (7) | 0.0247 (7) | 0.0193 (7) | −0.0027 (6) | −0.0052 (5) | 0.0014 (6) |
C19 | 0.0165 (7) | 0.0322 (8) | 0.0209 (7) | −0.0019 (6) | −0.0033 (5) | 0.0043 (6) |
C20 | 0.0171 (7) | 0.0305 (8) | 0.0195 (7) | 0.0047 (6) | −0.0005 (5) | 0.0010 (6) |
C21 | 0.0206 (7) | 0.0232 (7) | 0.0177 (6) | 0.0010 (6) | −0.0011 (5) | −0.0008 (5) |
C1—N1 | 1.4582 (16) | C10A—C11 | 1.5448 (18) |
C1—C12 | 1.5147 (18) | C10A—H10A | 0.977 (14) |
C1—C11 | 1.5409 (18) | C11—H11A | 0.997 (16) |
C1—H1 | 1.008 (14) | C11—H11B | 1.005 (15) |
N1—C2A | 1.4696 (16) | C12—O12 | 1.2019 (16) |
N1—C15 | 1.4714 (16) | C12—O13 | 1.3462 (15) |
C2A—C2B | 1.5126 (18) | C13—O13 | 1.4584 (16) |
C2A—C10A | 1.5590 (17) | C13—C14 | 1.505 (2) |
C2A—H2A | 0.984 (15) | C13—H13A | 0.993 (15) |
C2B—N2 | 1.3193 (16) | C13—H13B | 0.976 (15) |
C2B—N8 | 1.3620 (16) | C14—H14A | 0.983 (18) |
N2—C3A | 1.3990 (17) | C14—H14B | 0.994 (18) |
C3A—C4 | 1.3959 (18) | C14—H14C | 0.999 (17) |
C3A—C8A | 1.4125 (18) | C15—C16 | 1.5108 (18) |
C4—C5 | 1.383 (2) | C15—H15A | 0.994 (14) |
C4—H4 | 0.963 (16) | C15—H15B | 1.004 (15) |
C5—C6 | 1.405 (2) | C16—C17 | 1.3885 (19) |
C5—H5 | 0.971 (15) | C16—C21 | 1.3982 (18) |
C6—C7 | 1.385 (2) | C17—C18 | 1.3973 (19) |
C6—H6 | 0.971 (16) | C17—H17 | 0.969 (16) |
C7—C8A | 1.3912 (18) | C18—C19 | 1.386 (2) |
C7—H7 | 0.961 (15) | C18—H18 | 0.967 (16) |
C8A—N8 | 1.3785 (16) | C19—C20 | 1.391 (2) |
N8—C9 | 1.4625 (16) | C19—H19 | 0.977 (15) |
C9—C10A | 1.5425 (18) | C20—C21 | 1.3879 (19) |
C9—H9A | 1.006 (15) | C20—H20 | 0.975 (15) |
C9—H9B | 0.983 (15) | C21—H21 | 0.986 (15) |
N1—C1—C12 | 112.30 (10) | C9—C10A—H10A | 110.0 (8) |
N1—C1—C11 | 104.04 (10) | C11—C10A—H10A | 110.6 (8) |
C12—C1—C11 | 111.87 (11) | C2A—C10A—H10A | 111.4 (8) |
N1—C1—H1 | 112.2 (8) | C1—C11—C10A | 105.48 (10) |
C12—C1—H1 | 106.7 (8) | C1—C11—H11A | 112.6 (9) |
C11—C1—H1 | 109.7 (8) | C10A—C11—H11A | 111.2 (9) |
C1—N1—C2A | 105.42 (10) | C1—C11—H11B | 108.4 (9) |
C1—N1—C15 | 114.29 (10) | C10A—C11—H11B | 111.5 (9) |
C2A—N1—C15 | 114.70 (10) | H11A—C11—H11B | 107.8 (12) |
N1—C2A—C2B | 117.12 (10) | O12—C12—O13 | 124.14 (12) |
N1—C2A—C10A | 104.65 (10) | O12—C12—C1 | 126.49 (12) |
C2B—C2A—C10A | 101.79 (10) | O13—C12—C1 | 109.37 (11) |
N1—C2A—H2A | 108.5 (8) | O13—C13—C14 | 106.64 (11) |
C2B—C2A—H2A | 110.1 (9) | O13—C13—H13A | 108.1 (9) |
C10A—C2A—H2A | 114.8 (8) | C14—C13—H13A | 112.9 (9) |
N2—C2B—N8 | 114.23 (11) | O13—C13—H13B | 108.6 (9) |
N2—C2B—C2A | 135.40 (12) | C14—C13—H13B | 113.1 (9) |
N8—C2B—C2A | 110.31 (11) | H13A—C13—H13B | 107.4 (12) |
C2B—N2—C3A | 103.25 (11) | C12—O13—C13 | 116.23 (10) |
C4—C3A—N2 | 129.48 (12) | C13—C14—H14A | 112.9 (10) |
C4—C3A—C8A | 119.52 (12) | C13—C14—H14B | 109.8 (10) |
N2—C3A—C8A | 110.99 (11) | H14A—C14—H14B | 106.1 (14) |
C5—C4—C3A | 118.11 (13) | C13—C14—H14C | 111.3 (10) |
C5—C4—H4 | 120.4 (9) | H14A—C14—H14C | 108.3 (14) |
C3A—C4—H4 | 121.5 (9) | H14B—C14—H14C | 108.2 (13) |
C4—C5—C6 | 121.55 (13) | N1—C15—C16 | 111.48 (10) |
C4—C5—H5 | 120.6 (9) | N1—C15—H15A | 112.1 (8) |
C6—C5—H5 | 117.8 (9) | C16—C15—H15A | 108.3 (8) |
C7—C6—C5 | 121.44 (13) | N1—C15—H15B | 105.5 (8) |
C7—C6—H6 | 118.8 (9) | C16—C15—H15B | 110.3 (8) |
C5—C6—H6 | 119.7 (9) | H15A—C15—H15B | 109.2 (11) |
C6—C7—C8A | 116.70 (13) | C17—C16—C21 | 118.93 (12) |
C6—C7—H7 | 122.1 (9) | C17—C16—C15 | 121.45 (12) |
C8A—C7—H7 | 121.2 (9) | C21—C16—C15 | 119.62 (12) |
N8—C8A—C7 | 133.13 (12) | C16—C17—C18 | 120.71 (13) |
N8—C8A—C3A | 104.19 (11) | C16—C17—H17 | 119.9 (9) |
C7—C8A—C3A | 122.68 (12) | C18—C17—H17 | 119.3 (9) |
C2B—N8—C8A | 107.32 (10) | C19—C18—C17 | 119.74 (13) |
C2B—N8—C9 | 114.28 (11) | C19—C18—H18 | 119.8 (9) |
C8A—N8—C9 | 137.56 (11) | C17—C18—H18 | 120.4 (9) |
N8—C9—C10A | 101.61 (10) | C18—C19—C20 | 120.07 (13) |
N8—C9—H9A | 110.0 (8) | C18—C19—H19 | 119.4 (9) |
C10A—C9—H9A | 113.2 (8) | C20—C19—H19 | 120.6 (9) |
N8—C9—H9B | 109.8 (9) | C21—C20—C19 | 119.96 (13) |
C10A—C9—H9B | 112.6 (9) | C21—C20—H20 | 119.7 (9) |
H9A—C9—H9B | 109.4 (12) | C19—C20—H20 | 120.3 (9) |
C9—C10A—C11 | 113.90 (11) | C20—C21—C16 | 120.58 (13) |
C9—C10A—C2A | 106.95 (10) | C20—C21—H21 | 121.1 (9) |
C11—C10A—C2A | 103.81 (10) | C16—C21—H21 | 118.4 (9) |
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11B···O12i | 1.005 (15) | 2.399 (15) | 3.3344 (17) | 154.5 (12) |
C18—H18···O12ii | 0.968 (15) | 2.514 (16) | 3.3505 (17) | 144.6 (12) |
Symmetry codes: (i) −x, −y+2, −z+2; (ii) −x−1/2, y−1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C22H23N3O2 |
Mr | 361.43 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 90 |
a, b, c (Å) | 9.2498 (5), 13.8999 (7), 14.2258 (7) |
β (°) | 90.345 (1) |
V (Å3) | 1829.00 (16) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.39 × 0.16 × 0.13 |
Data collection | |
Diffractometer | Bruker SMART1000 CCD area-detector diffractometer |
Absorption correction | Numerical (SADABS; Blessing, 1995; Sheldrick, 2007) |
Tmin, Tmax | 0.962, 0.989 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16147, 4194, 3080 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.095, 1.09 |
No. of reflections | 4194 |
No. of parameters | 336 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.37, −0.27 |
Computer programs: SMART (Bruker, 2002), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP in SHELXTL/PC (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11B···O12i | 1.005 (15) | 2.399 (15) | 3.3344 (17) | 154.5 (12) |
C18—H18···O12ii | 0.968 (15) | 2.514 (16) | 3.3505 (17) | 144.6 (12) |
Symmetry codes: (i) −x, −y+2, −z+2; (ii) −x−1/2, y−1/2, −z+3/2. |
Acknowledgements
The authors thank the National Science Foundation (grant No. CHE-0910870) and the National Institutes of Health (grant No. GM0891583) for financial support of this work.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Polycyclic nitrogen-containing heterocycles form the basic skeleton of numerous alkaloids and physiologically active compounds (Southon & Buckingham, 1989). The title polycyclic N-heterocycle, ethyl 1-benzylpyrrolidino[2',3':3,4]pyrrolidino[1,2-a] benzimidazole-2-carboxylate, was obtained via an intramolecular azomethine ylide cycloaddition and possesses two medicinally relevant pharmacophores – benzimidazole and pyrrolidine (Gudmundsson et al., 2000; Hamilton & Steiner, 1997)– in one rigid molecule; the title compound may afford important bioactivity.
In the structure of the title compound (Fig. 1), the benzoimidazole unit is essentially planar, with a root mean square deviation of 0.0087 Å from the nine constituent atoms. The two pyrrolidine rings have envelope forms and are cis fused, which is consistent with conventional azomethine ylide cycloadditions in similar systems (Pedrosa et al., 2006; Yang et al., 2006). However, unlike the previously reported analogues obtained from an intramolecular azomethine ylide and alkene cycloaddition tethered by an oxazolidin-2-one (Cheng et al., 2001), the ester appendage in the title structure was unambiguously assigned as cis to the angular protons H2A and H10A by X-ray crystallography. The crystal packing (Fig. 2) exhibits π–π stacking of parallel benzimidazole ring systems, with a Cg1···Cg2 distance of 3.518 Å [Cg1 and Cg2 are the centroids of the C3A–C8A benzene ring in one molecule and the C2B/N2/C3A/C8A/N8 imidazole ring in the other molecule, respectively]. Intermolecular C—H···O contacts may also play a role in the stability of the packing.