metal-organic compounds
Propane-1,2-diaminium tris(pyridine-2,6-dicarboxylato-κ3O2,N,O6)zirconate(IV) trihydrate
aDepartment of Chemistry, Islamic Azad University, North Tehran Branch, Tehran, Iran, and bDepartment of Chemistry, Shahid Beheshti University, G. C., Evin, Tehran 1983963113, Iran
*Correspondence e-mail: h_pasdar@iau-tnb.ac.ir
In the title compound, (C3H12N2)[Zr(C7H3NO4)3]·3H2O, the ZrIV cation is chelated by three pyridine-2,6-dicarboxylate anions in a distorted tricapped trigonal–prismatic environment. The is stabilized by intermolecular N—H⋯O and O—H⋯O hydrogen bonds.
Related literature
For the background to proton-transfer compounds, see: Aghabozorg et al. (2008). For related structures, see: Aghabozorg et al. (2005); Daneshvar et al. (2008); Pasdar et al. (2010a,b, 2011a,b).
Experimental
Crystal data
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2005); cell X-AREA (Stoe & Cie, 2005); data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536811008488/xu5157sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811008488/xu5157Isup2.hkl
A solution of propane-1,2-diamine (0.074 g, 1 mmol) in water (8 ml) and 2,6-pyridinedicarboxylic acid (0.501 g, 3 mmol) in water (10 ml) were mixed and stirred until clear solution obtained. Then a solution of ZrCl4.3H2O (0.116 g, 0.5 mmol) in water (5 ml) was added to the mixture of acid-base and stirrer for 5 h. Crystals of the title compound suitable for X-ray analysis were obtained by slow evaporation after one month at room temperature (m.p: 210 °C).
Water H atoms were found in a difference Fourier map and positional parameters were refined, Uiso(H) = 0.115 Å2. Ammonium H atoms were positioned geometrically and refined as riding atoms with N—H = 0.89 Å and Uiso(H) = 1.5Ueq(N). Other H atoms were positioned geometrically and refined as riding atoms with C—H = 0.93-0.98 Å, Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for the others.
Data collection: X-AREA (Stoe & Cie, 2005); cell
X-AREA (Stoe & Cie, 2005); data reduction: X-AREA (Stoe & Cie, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. The molecular structure of the title compound with displacement ellipsoids drawn at 30% probability level. | |
Fig. 2. The coordination environment around ZrIV ion in the title compound. | |
Fig. 3. The packing diagram of the title compound. The intermolecular N—H···O, O—H···O hydrogen bonds are shown as dashed lines. |
(C3H12N2)[Zr(C7H3NO4)3]·3H2O | F(000) = 1464 |
Mr = 716.73 | Dx = 1.714 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 7481 reflections |
a = 10.515 (2) Å | θ = 2.1–29.2° |
b = 19.195 (4) Å | µ = 0.48 mm−1 |
c = 14.149 (3) Å | T = 298 K |
β = 103.39 (3)° | Prism, colorless |
V = 2778.1 (10) Å3 | 0.25 × 0.15 × 0.15 mm |
Z = 4 |
Stoe IPDS II diffractometer | 7481 independent reflections |
Radiation source: fine-focus sealed tube | 5264 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.133 |
rotation method scans | θmax = 29.2°, θmin = 2.1° |
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) | h = −14→11 |
Tmin = 0.915, Tmax = 0.926 | k = −26→26 |
21838 measured reflections | l = −19→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.086 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.206 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.18 | w = 1/[σ2(Fo2) + (0.0753P)2 + 3.9962P] where P = (Fo2 + 2Fc2)/3 |
7481 reflections | (Δ/σ)max = 0.001 |
427 parameters | Δρmax = 1.09 e Å−3 |
7 restraints | Δρmin = −0.77 e Å−3 |
(C3H12N2)[Zr(C7H3NO4)3]·3H2O | V = 2778.1 (10) Å3 |
Mr = 716.73 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.515 (2) Å | µ = 0.48 mm−1 |
b = 19.195 (4) Å | T = 298 K |
c = 14.149 (3) Å | 0.25 × 0.15 × 0.15 mm |
β = 103.39 (3)° |
Stoe IPDS II diffractometer | 7481 independent reflections |
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) | 5264 reflections with I > 2σ(I) |
Tmin = 0.915, Tmax = 0.926 | Rint = 0.133 |
21838 measured reflections |
R[F2 > 2σ(F2)] = 0.086 | 7 restraints |
wR(F2) = 0.206 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.18 | Δρmax = 1.09 e Å−3 |
7481 reflections | Δρmin = −0.77 e Å−3 |
427 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C18 | 1.0667 (8) | 0.5828 (4) | 0.6397 (5) | 0.0486 (18) | |
H18 | 1.0902 | 0.5663 | 0.7032 | 0.058* | |
O13 | 0.3681 (10) | 0.8559 (3) | 0.2972 (5) | 0.084 (2) | |
O14 | 0.5141 (7) | 0.8422 (4) | 0.4841 (5) | 0.0666 (18) | |
Zr1 | 0.93403 (5) | 0.68252 (3) | 0.29848 (3) | 0.02015 (14) | |
O11 | 0.7886 (4) | 0.6046 (2) | 0.3278 (3) | 0.0299 (9) | |
O5 | 1.0314 (4) | 0.7169 (2) | 0.1812 (3) | 0.0285 (8) | |
O9 | 1.1276 (4) | 0.7203 (2) | 0.3786 (3) | 0.0281 (8) | |
O3 | 0.7472 (4) | 0.7187 (2) | 0.2025 (3) | 0.0281 (8) | |
N2 | 0.9428 (5) | 0.8044 (2) | 0.2844 (3) | 0.0250 (9) | |
O7 | 0.8366 (4) | 0.7374 (2) | 0.4015 (3) | 0.0318 (9) | |
O1 | 1.0691 (4) | 0.5933 (2) | 0.2947 (3) | 0.0311 (9) | |
N3 | 0.9968 (5) | 0.6338 (2) | 0.4535 (3) | 0.0242 (9) | |
N1 | 0.8636 (5) | 0.6103 (2) | 0.1615 (3) | 0.0242 (9) | |
O4 | 0.5741 (4) | 0.7014 (3) | 0.0797 (3) | 0.0364 (10) | |
C7 | 0.6845 (6) | 0.6870 (3) | 0.1263 (4) | 0.0279 (11) | |
C15 | 1.1900 (6) | 0.6989 (3) | 0.4611 (4) | 0.0254 (11) | |
O6 | 1.1211 (5) | 0.7982 (3) | 0.1045 (3) | 0.0385 (10) | |
O2 | 1.1365 (5) | 0.5005 (2) | 0.2250 (4) | 0.0421 (11) | |
O8 | 0.7646 (6) | 0.8342 (3) | 0.4614 (4) | 0.0499 (13) | |
C6 | 0.7542 (6) | 0.6251 (3) | 0.0975 (4) | 0.0278 (11) | |
C2 | 0.9348 (6) | 0.5542 (3) | 0.1484 (4) | 0.0282 (11) | |
C9 | 1.0020 (6) | 0.8333 (3) | 0.2204 (4) | 0.0267 (11) | |
C1 | 1.0562 (6) | 0.5475 (3) | 0.2271 (4) | 0.0276 (11) | |
C8 | 1.0568 (5) | 0.7797 (3) | 0.1625 (4) | 0.0266 (11) | |
C14 | 0.8231 (6) | 0.8035 (3) | 0.4075 (4) | 0.0307 (12) | |
C13 | 0.8855 (6) | 0.8446 (3) | 0.3394 (4) | 0.0287 (12) | |
O10 | 1.3031 (4) | 0.7132 (3) | 0.5023 (3) | 0.0359 (10) | |
O12 | 0.6980 (5) | 0.5485 (3) | 0.4335 (3) | 0.0429 (11) | |
C16 | 1.1115 (6) | 0.6500 (3) | 0.5102 (4) | 0.0273 (11) | |
C4 | 0.7813 (8) | 0.5259 (4) | 0.0028 (5) | 0.0460 (17) | |
H4 | 0.7531 | 0.4974 | −0.0511 | 0.055* | |
C20 | 0.9149 (6) | 0.5919 (3) | 0.4871 (4) | 0.0283 (11) | |
C21 | 0.7902 (6) | 0.5797 (3) | 0.4117 (4) | 0.0308 (12) | |
C3 | 0.8944 (7) | 0.5103 (3) | 0.0707 (5) | 0.0375 (14) | |
H3 | 0.9426 | 0.4707 | 0.0639 | 0.045* | |
C11 | 0.9459 (8) | 0.9464 (3) | 0.2640 (5) | 0.0440 (17) | |
H11 | 0.9467 | 0.9946 | 0.2570 | 0.053* | |
C5 | 0.7101 (7) | 0.5843 (4) | 0.0153 (5) | 0.0406 (15) | |
H5 | 0.6342 | 0.5961 | −0.0303 | 0.049* | |
C19 | 0.9465 (8) | 0.5654 (4) | 0.5800 (5) | 0.0440 (16) | |
H19 | 0.8887 | 0.5365 | 0.6022 | 0.053* | |
C12 | 0.8857 (7) | 0.9168 (3) | 0.3310 (5) | 0.0378 (14) | |
H12 | 0.8460 | 0.9445 | 0.3698 | 0.045* | |
C17 | 1.1515 (6) | 0.6252 (4) | 0.6036 (4) | 0.0363 (14) | |
H17 | 1.2335 | 0.6365 | 0.6417 | 0.044* | |
C10 | 1.0048 (7) | 0.9048 (3) | 0.2074 (5) | 0.0380 (14) | |
H10 | 1.0453 | 0.9241 | 0.1617 | 0.046* | |
N5 | 0.3816 (6) | 0.7484 (3) | 0.1693 (4) | 0.0407 (13) | |
H5A | 0.3872 | 0.7903 | 0.1969 | 0.061* | |
H5B | 0.3091 | 0.7460 | 0.1222 | 0.061* | |
H5C | 0.4509 | 0.7413 | 0.1444 | 0.061* | |
C23 | 0.3774 (7) | 0.6935 (4) | 0.2445 (5) | 0.0379 (14) | |
H23 | 0.3049 | 0.7040 | 0.2751 | 0.045* | |
C22 | 0.5033 (7) | 0.6975 (4) | 0.3206 (5) | 0.0419 (16) | |
H22A | 0.5725 | 0.6760 | 0.2958 | 0.050* | |
H22B | 0.5263 | 0.7460 | 0.3342 | 0.050* | |
N4 | 0.4933 (6) | 0.6623 (4) | 0.4117 (4) | 0.0493 (16) | |
H4A | 0.4389 | 0.6860 | 0.4394 | 0.074* | |
H4B | 0.5720 | 0.6605 | 0.4520 | 0.074* | |
H4C | 0.4631 | 0.6192 | 0.3983 | 0.074* | |
C24 | 0.3509 (10) | 0.6242 (4) | 0.1930 (5) | 0.053 (2) | |
H24A | 0.4143 | 0.6165 | 0.1549 | 0.080* | |
H24B | 0.2648 | 0.6246 | 0.1512 | 0.080* | |
H24C | 0.3569 | 0.5877 | 0.2401 | 0.080* | |
O15 | 0.6503 (7) | 0.4645 (4) | 0.5884 (5) | 0.077 (2) | |
H15A | 0.672 (13) | 0.485 (7) | 0.531 (7) | 0.115* | |
H14A | 0.497 (14) | 0.820 (7) | 0.537 (8) | 0.115* | |
H14B | 0.592 (6) | 0.835 (7) | 0.479 (10) | 0.115* | |
H13A | 0.426 (11) | 0.870 (7) | 0.340 (8) | 0.115* | |
H13B | 0.342 (13) | 0.892 (4) | 0.271 (8) | 0.115* | |
H15B | 0.728 (6) | 0.453 (8) | 0.601 (10) | 0.115* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C18 | 0.053 (4) | 0.059 (4) | 0.029 (3) | −0.008 (4) | 0.000 (3) | 0.019 (3) |
O13 | 0.141 (8) | 0.037 (3) | 0.070 (4) | 0.017 (4) | 0.017 (5) | −0.005 (3) |
O14 | 0.072 (4) | 0.072 (4) | 0.066 (4) | 0.018 (4) | 0.037 (3) | 0.026 (3) |
Zr1 | 0.0211 (2) | 0.0215 (2) | 0.0184 (2) | 0.0005 (2) | 0.00570 (16) | 0.0007 (2) |
O11 | 0.032 (2) | 0.032 (2) | 0.0257 (18) | −0.0045 (17) | 0.0058 (16) | 0.0019 (16) |
O5 | 0.035 (2) | 0.027 (2) | 0.0275 (19) | 0.0021 (17) | 0.0147 (17) | −0.0016 (15) |
O9 | 0.029 (2) | 0.028 (2) | 0.0282 (19) | −0.0051 (16) | 0.0097 (16) | 0.0039 (15) |
O3 | 0.030 (2) | 0.029 (2) | 0.0250 (18) | 0.0030 (16) | 0.0057 (16) | −0.0003 (15) |
N2 | 0.026 (2) | 0.024 (2) | 0.027 (2) | 0.0010 (18) | 0.0093 (18) | −0.0020 (16) |
O7 | 0.038 (2) | 0.034 (2) | 0.0275 (19) | 0.0006 (18) | 0.0161 (18) | 0.0001 (17) |
O1 | 0.037 (2) | 0.031 (2) | 0.0264 (19) | 0.0058 (18) | 0.0080 (17) | 0.0005 (16) |
N3 | 0.027 (2) | 0.024 (2) | 0.023 (2) | −0.0020 (18) | 0.0079 (18) | 0.0026 (17) |
N1 | 0.026 (2) | 0.025 (2) | 0.023 (2) | 0.0015 (18) | 0.0070 (18) | 0.0011 (17) |
O4 | 0.024 (2) | 0.047 (3) | 0.037 (2) | 0.0043 (18) | 0.0039 (18) | 0.0041 (19) |
C7 | 0.030 (3) | 0.028 (3) | 0.027 (2) | −0.003 (2) | 0.010 (2) | 0.004 (2) |
C15 | 0.025 (3) | 0.024 (3) | 0.027 (2) | 0.001 (2) | 0.007 (2) | −0.0047 (19) |
O6 | 0.037 (2) | 0.049 (3) | 0.034 (2) | −0.001 (2) | 0.0153 (19) | 0.0118 (19) |
O2 | 0.043 (3) | 0.026 (2) | 0.059 (3) | 0.010 (2) | 0.017 (2) | 0.004 (2) |
O8 | 0.056 (3) | 0.053 (3) | 0.050 (3) | 0.007 (2) | 0.030 (3) | −0.011 (2) |
C6 | 0.032 (3) | 0.028 (3) | 0.027 (2) | −0.006 (2) | 0.012 (2) | 0.002 (2) |
C2 | 0.030 (3) | 0.027 (3) | 0.031 (3) | −0.002 (2) | 0.014 (2) | 0.000 (2) |
C9 | 0.023 (3) | 0.026 (3) | 0.030 (3) | 0.000 (2) | 0.004 (2) | 0.003 (2) |
C1 | 0.030 (3) | 0.020 (2) | 0.035 (3) | 0.001 (2) | 0.013 (2) | 0.003 (2) |
C8 | 0.023 (3) | 0.033 (3) | 0.023 (2) | 0.001 (2) | 0.003 (2) | 0.006 (2) |
C14 | 0.028 (3) | 0.037 (3) | 0.028 (3) | 0.003 (2) | 0.009 (2) | −0.006 (2) |
C13 | 0.026 (3) | 0.031 (3) | 0.027 (3) | 0.000 (2) | 0.003 (2) | −0.005 (2) |
O10 | 0.023 (2) | 0.049 (3) | 0.034 (2) | −0.0060 (19) | 0.0039 (17) | 0.001 (2) |
O12 | 0.036 (2) | 0.050 (3) | 0.045 (2) | −0.011 (2) | 0.013 (2) | 0.016 (2) |
C16 | 0.029 (3) | 0.029 (3) | 0.023 (2) | 0.004 (2) | 0.003 (2) | −0.001 (2) |
C4 | 0.053 (4) | 0.048 (4) | 0.039 (3) | −0.011 (3) | 0.014 (3) | −0.014 (3) |
C20 | 0.028 (3) | 0.030 (3) | 0.026 (2) | −0.002 (2) | 0.006 (2) | 0.004 (2) |
C21 | 0.028 (3) | 0.033 (3) | 0.031 (3) | 0.004 (2) | 0.007 (2) | 0.003 (2) |
C3 | 0.050 (4) | 0.028 (3) | 0.039 (3) | −0.002 (3) | 0.019 (3) | −0.005 (2) |
C11 | 0.063 (5) | 0.024 (3) | 0.045 (3) | −0.002 (3) | 0.013 (3) | −0.003 (3) |
C5 | 0.040 (4) | 0.049 (4) | 0.031 (3) | −0.004 (3) | 0.003 (3) | −0.008 (3) |
C19 | 0.047 (4) | 0.050 (4) | 0.036 (3) | −0.008 (3) | 0.011 (3) | 0.013 (3) |
C12 | 0.041 (4) | 0.029 (3) | 0.040 (3) | 0.007 (3) | 0.002 (3) | −0.008 (3) |
C17 | 0.031 (3) | 0.041 (3) | 0.032 (3) | −0.003 (3) | 0.000 (2) | 0.007 (3) |
C10 | 0.044 (4) | 0.032 (3) | 0.037 (3) | −0.008 (3) | 0.009 (3) | 0.008 (2) |
N5 | 0.042 (3) | 0.038 (3) | 0.043 (3) | 0.004 (2) | 0.012 (3) | 0.009 (2) |
C23 | 0.035 (3) | 0.045 (4) | 0.037 (3) | 0.002 (3) | 0.013 (3) | 0.004 (3) |
C22 | 0.037 (4) | 0.049 (4) | 0.040 (3) | −0.002 (3) | 0.007 (3) | 0.004 (3) |
N4 | 0.044 (3) | 0.072 (4) | 0.032 (3) | 0.008 (3) | 0.010 (3) | 0.001 (3) |
C24 | 0.079 (6) | 0.041 (4) | 0.040 (4) | −0.013 (4) | 0.013 (4) | 0.001 (3) |
O15 | 0.071 (4) | 0.091 (5) | 0.068 (4) | −0.024 (4) | 0.014 (4) | 0.031 (4) |
C18—C17 | 1.388 (10) | C9—C10 | 1.387 (8) |
C18—C19 | 1.389 (10) | C9—C8 | 1.509 (8) |
C18—H18 | 0.9300 | C14—C13 | 1.508 (9) |
O13—H13A | 0.80 (8) | C13—C12 | 1.392 (9) |
O13—H13B | 0.80 (4) | O12—C21 | 1.239 (8) |
O14—H14A | 0.91 (8) | C16—C17 | 1.376 (8) |
O14—H14B | 0.85 (4) | C4—C3 | 1.378 (10) |
Zr1—O9 | 2.210 (4) | C4—C5 | 1.382 (11) |
Zr1—O3 | 2.225 (4) | C4—H4 | 0.9300 |
Zr1—O7 | 2.230 (4) | C20—C19 | 1.377 (8) |
Zr1—O1 | 2.233 (4) | C20—C21 | 1.504 (8) |
Zr1—O5 | 2.241 (4) | C3—H3 | 0.9300 |
Zr1—O11 | 2.245 (4) | C11—C10 | 1.375 (10) |
Zr1—N3 | 2.334 (4) | C11—C12 | 1.379 (11) |
Zr1—N2 | 2.352 (4) | C11—H11 | 0.9300 |
Zr1—N1 | 2.358 (4) | C5—H5 | 0.9300 |
O11—C21 | 1.277 (7) | C19—H19 | 0.9300 |
O5—C8 | 1.275 (7) | C12—H12 | 0.9300 |
O9—C15 | 1.267 (7) | C17—H17 | 0.9300 |
O3—C7 | 1.280 (7) | C10—H10 | 0.9300 |
N2—C9 | 1.333 (7) | N5—C23 | 1.506 (8) |
N2—C13 | 1.334 (7) | N5—H5A | 0.8900 |
O7—C14 | 1.283 (7) | N5—H5B | 0.8900 |
O1—C1 | 1.283 (7) | N5—H5C | 0.8900 |
N3—C16 | 1.321 (7) | C23—C22 | 1.502 (9) |
N3—C20 | 1.343 (7) | C23—C24 | 1.510 (10) |
N1—C6 | 1.320 (7) | C23—H23 | 0.9800 |
N1—C2 | 1.350 (7) | C22—N4 | 1.480 (9) |
O4—C7 | 1.226 (7) | C22—H22A | 0.9700 |
C7—C6 | 1.502 (8) | C22—H22B | 0.9700 |
C15—O10 | 1.227 (7) | N4—H4A | 0.8900 |
C15—C16 | 1.521 (8) | N4—H4B | 0.8900 |
O6—C8 | 1.230 (7) | N4—H4C | 0.8900 |
O2—C1 | 1.241 (7) | C24—H24A | 0.9600 |
O8—C14 | 1.233 (8) | C24—H24B | 0.9600 |
C6—C5 | 1.390 (8) | C24—H24C | 0.9600 |
C2—C3 | 1.372 (8) | O15—H15A | 0.98 (9) |
C2—C1 | 1.492 (8) | O15—H15B | 0.83 (4) |
C17—C18—C19 | 119.2 (6) | O6—C8—O5 | 125.9 (6) |
C17—C18—H18 | 120.4 | O6—C8—C9 | 120.2 (5) |
C19—C18—H18 | 120.4 | O5—C8—C9 | 114.0 (5) |
H13A—O13—H13B | 100 (8) | O8—C14—O7 | 126.3 (6) |
H14A—O14—H14B | 111 (10) | O8—C14—C13 | 119.9 (6) |
O9—Zr1—O3 | 142.08 (15) | O7—C14—C13 | 113.7 (5) |
O9—Zr1—O7 | 91.02 (16) | N2—C13—C12 | 121.0 (6) |
O3—Zr1—O7 | 77.11 (15) | N2—C13—C14 | 113.2 (5) |
O9—Zr1—O1 | 75.43 (16) | C12—C13—C14 | 125.8 (6) |
O3—Zr1—O1 | 134.53 (15) | N3—C16—C17 | 122.3 (6) |
O7—Zr1—O1 | 140.25 (15) | N3—C16—C15 | 112.5 (5) |
O9—Zr1—O5 | 76.03 (15) | C17—C16—C15 | 125.1 (5) |
O3—Zr1—O5 | 86.94 (15) | C3—C4—C5 | 119.6 (6) |
O7—Zr1—O5 | 134.60 (16) | C3—C4—H4 | 120.2 |
O1—Zr1—O5 | 78.81 (15) | C5—C4—H4 | 120.2 |
O9—Zr1—O11 | 135.19 (14) | N3—C20—C19 | 121.8 (6) |
O3—Zr1—O11 | 77.16 (15) | N3—C20—C21 | 111.6 (5) |
O7—Zr1—O11 | 76.04 (16) | C19—C20—C21 | 126.7 (6) |
O1—Zr1—O11 | 87.57 (16) | O12—C21—O11 | 124.8 (6) |
O5—Zr1—O11 | 141.28 (15) | O12—C21—C20 | 120.2 (5) |
O9—Zr1—N3 | 67.84 (15) | O11—C21—C20 | 115.0 (5) |
O3—Zr1—N3 | 135.72 (16) | C2—C3—C4 | 118.8 (6) |
O7—Zr1—N3 | 69.39 (16) | C2—C3—H3 | 120.6 |
O1—Zr1—N3 | 70.89 (15) | C4—C3—H3 | 120.6 |
O5—Zr1—N3 | 137.31 (16) | C10—C11—C12 | 120.1 (6) |
O11—Zr1—N3 | 67.44 (15) | C10—C11—H11 | 120.0 |
O9—Zr1—N2 | 70.58 (16) | C12—C11—H11 | 120.0 |
O3—Zr1—N2 | 71.60 (16) | C4—C5—C6 | 118.5 (6) |
O7—Zr1—N2 | 67.56 (16) | C4—C5—H5 | 120.7 |
O1—Zr1—N2 | 136.30 (17) | C6—C5—H5 | 120.7 |
O5—Zr1—N2 | 67.09 (15) | C20—C19—C18 | 118.5 (6) |
O11—Zr1—N2 | 136.09 (16) | C20—C19—H19 | 120.8 |
N3—Zr1—N2 | 118.01 (16) | C18—C19—H19 | 120.8 |
O9—Zr1—N1 | 133.70 (16) | C11—C12—C13 | 118.7 (6) |
O3—Zr1—N1 | 67.48 (15) | C11—C12—H12 | 120.7 |
O7—Zr1—N1 | 135.26 (16) | C13—C12—H12 | 120.7 |
O1—Zr1—N1 | 67.05 (15) | C16—C17—C18 | 118.5 (6) |
O5—Zr1—N1 | 71.04 (16) | C16—C17—H17 | 120.8 |
O11—Zr1—N1 | 70.27 (16) | C18—C17—H17 | 120.8 |
N3—Zr1—N1 | 120.25 (16) | C11—C10—C9 | 118.2 (6) |
N2—Zr1—N1 | 121.74 (15) | C11—C10—H10 | 120.9 |
C21—O11—Zr1 | 123.9 (4) | C9—C10—H10 | 120.9 |
C8—O5—Zr1 | 125.9 (4) | C23—N5—H5A | 109.5 |
C15—O9—Zr1 | 125.8 (4) | C23—N5—H5B | 109.5 |
C7—O3—Zr1 | 125.1 (4) | H5A—N5—H5B | 109.5 |
C9—N2—C13 | 120.1 (5) | C23—N5—H5C | 109.5 |
C9—N2—Zr1 | 120.3 (4) | H5A—N5—H5C | 109.5 |
C13—N2—Zr1 | 119.6 (4) | H5B—N5—H5C | 109.5 |
C14—O7—Zr1 | 125.9 (4) | C22—C23—N5 | 107.8 (6) |
C1—O1—Zr1 | 125.8 (4) | C22—C23—C24 | 115.1 (7) |
C16—N3—C20 | 119.7 (5) | N5—C23—C24 | 107.9 (6) |
C16—N3—Zr1 | 119.8 (4) | C22—C23—H23 | 108.6 |
C20—N3—Zr1 | 120.5 (4) | N5—C23—H23 | 108.6 |
C6—N1—C2 | 120.1 (5) | C24—C23—H23 | 108.6 |
C6—N1—Zr1 | 119.7 (4) | N4—C22—C23 | 111.8 (6) |
C2—N1—Zr1 | 120.2 (4) | N4—C22—H22A | 109.3 |
O4—C7—O3 | 125.8 (6) | C23—C22—H22A | 109.3 |
O4—C7—C6 | 119.5 (5) | N4—C22—H22B | 109.3 |
O3—C7—C6 | 114.6 (5) | C23—C22—H22B | 109.3 |
O10—C15—O9 | 127.1 (6) | H22A—C22—H22B | 107.9 |
O10—C15—C16 | 119.3 (5) | C22—N4—H4A | 109.5 |
O9—C15—C16 | 113.6 (5) | C22—N4—H4B | 109.5 |
N1—C6—C5 | 121.5 (6) | H4A—N4—H4B | 109.5 |
N1—C6—C7 | 112.7 (5) | C22—N4—H4C | 109.5 |
C5—C6—C7 | 125.7 (6) | H4A—N4—H4C | 109.5 |
N1—C2—C3 | 121.4 (6) | H4B—N4—H4C | 109.5 |
N1—C2—C1 | 111.8 (5) | C23—C24—H24A | 109.5 |
C3—C2—C1 | 126.7 (6) | C23—C24—H24B | 109.5 |
N2—C9—C10 | 121.9 (6) | H24A—C24—H24B | 109.5 |
N2—C9—C8 | 112.5 (5) | C23—C24—H24C | 109.5 |
C10—C9—C8 | 125.5 (6) | H24A—C24—H24C | 109.5 |
O2—C1—O1 | 124.1 (6) | H24B—C24—H24C | 109.5 |
O2—C1—C2 | 120.9 (5) | H15A—O15—H15B | 83 (10) |
O1—C1—C2 | 115.0 (5) | ||
O9—Zr1—O11—C21 | 15.8 (6) | O9—Zr1—N1—C2 | 38.3 (5) |
O3—Zr1—O11—C21 | −140.9 (5) | O3—Zr1—N1—C2 | −179.9 (5) |
O7—Zr1—O11—C21 | −61.2 (5) | O7—Zr1—N1—C2 | −139.5 (4) |
O1—Zr1—O11—C21 | 82.2 (5) | O1—Zr1—N1—C2 | −0.2 (4) |
O5—Zr1—O11—C21 | 150.9 (4) | O5—Zr1—N1—C2 | 85.4 (4) |
N3—Zr1—O11—C21 | 11.9 (4) | O11—Zr1—N1—C2 | −96.1 (4) |
N2—Zr1—O11—C21 | −95.6 (5) | N3—Zr1—N1—C2 | −49.0 (5) |
N1—Zr1—O11—C21 | 148.7 (5) | N2—Zr1—N1—C2 | 131.2 (4) |
O9—Zr1—O5—C8 | −69.6 (4) | Zr1—O3—C7—O4 | 170.3 (4) |
O3—Zr1—O5—C8 | 76.2 (4) | Zr1—O3—C7—C6 | −6.6 (7) |
O7—Zr1—O5—C8 | 7.7 (5) | Zr1—O9—C15—O10 | 171.2 (5) |
O1—Zr1—O5—C8 | −147.2 (5) | Zr1—O9—C15—C16 | −8.1 (7) |
O11—Zr1—O5—C8 | 141.2 (4) | C2—N1—C6—C5 | −0.6 (9) |
N3—Zr1—O5—C8 | −102.2 (5) | Zr1—N1—C6—C5 | 179.3 (5) |
N2—Zr1—O5—C8 | 4.9 (4) | C2—N1—C6—C7 | 177.0 (5) |
N1—Zr1—O5—C8 | 143.4 (5) | Zr1—N1—C6—C7 | −3.1 (6) |
O3—Zr1—O9—C15 | 142.8 (4) | O4—C7—C6—N1 | −171.2 (5) |
O7—Zr1—O9—C15 | 72.6 (4) | O3—C7—C6—N1 | 5.9 (7) |
O1—Zr1—O9—C15 | −69.5 (4) | O4—C7—C6—C5 | 6.2 (9) |
O5—Zr1—O9—C15 | −151.4 (5) | O3—C7—C6—C5 | −176.6 (6) |
O11—Zr1—O9—C15 | 1.6 (5) | C6—N1—C2—C3 | −1.8 (8) |
N3—Zr1—O9—C15 | 5.4 (4) | Zr1—N1—C2—C3 | 178.3 (4) |
N2—Zr1—O9—C15 | 138.4 (5) | C6—N1—C2—C1 | 178.6 (5) |
N1—Zr1—O9—C15 | −105.9 (5) | Zr1—N1—C2—C1 | −1.3 (6) |
O9—Zr1—O3—C7 | 137.0 (4) | C13—N2—C9—C10 | −1.0 (9) |
O7—Zr1—O3—C7 | −148.3 (5) | Zr1—N2—C9—C10 | 177.4 (5) |
O1—Zr1—O3—C7 | 3.5 (5) | C13—N2—C9—C8 | −177.9 (5) |
O5—Zr1—O3—C7 | 74.5 (4) | Zr1—N2—C9—C8 | 0.5 (6) |
O11—Zr1—O3—C7 | −70.0 (4) | Zr1—O1—C1—O2 | 176.4 (4) |
N3—Zr1—O3—C7 | −107.1 (4) | Zr1—O1—C1—C2 | −3.6 (7) |
N2—Zr1—O3—C7 | 141.3 (5) | N1—C2—C1—O2 | −177.0 (5) |
N1—Zr1—O3—C7 | 3.8 (4) | C3—C2—C1—O2 | 3.4 (9) |
O9—Zr1—N2—C9 | 80.1 (4) | N1—C2—C1—O1 | 2.9 (7) |
O3—Zr1—N2—C9 | −97.0 (4) | C3—C2—C1—O1 | −176.7 (6) |
O7—Zr1—N2—C9 | 179.7 (5) | Zr1—O5—C8—O6 | 172.6 (4) |
O1—Zr1—N2—C9 | 39.2 (5) | Zr1—O5—C8—C9 | −6.3 (6) |
O5—Zr1—N2—C9 | −2.4 (4) | N2—C9—C8—O6 | −175.6 (5) |
O11—Zr1—N2—C9 | −143.9 (4) | C10—C9—C8—O6 | 7.6 (9) |
N3—Zr1—N2—C9 | 130.3 (4) | N2—C9—C8—O5 | 3.3 (7) |
N1—Zr1—N2—C9 | −49.9 (5) | C10—C9—C8—O5 | −173.5 (6) |
O9—Zr1—N2—C13 | −101.4 (4) | Zr1—O7—C14—O8 | 176.7 (5) |
O3—Zr1—N2—C13 | 81.4 (4) | Zr1—O7—C14—C13 | −2.5 (7) |
O7—Zr1—N2—C13 | −1.9 (4) | C9—N2—C13—C12 | 0.3 (9) |
O1—Zr1—N2—C13 | −142.4 (4) | Zr1—N2—C13—C12 | −178.1 (4) |
O5—Zr1—N2—C13 | 176.0 (5) | C9—N2—C13—C14 | 179.8 (5) |
O11—Zr1—N2—C13 | 34.5 (5) | Zr1—N2—C13—C14 | 1.4 (6) |
N3—Zr1—N2—C13 | −51.2 (5) | O8—C14—C13—N2 | −178.7 (6) |
N1—Zr1—N2—C13 | 128.5 (4) | O7—C14—C13—N2 | 0.5 (7) |
O9—Zr1—O7—C14 | 70.8 (5) | O8—C14—C13—C12 | 0.8 (10) |
O3—Zr1—O7—C14 | −72.8 (5) | O7—C14—C13—C12 | −180.0 (6) |
O1—Zr1—O7—C14 | 139.0 (4) | C20—N3—C16—C17 | 0.3 (9) |
O5—Zr1—O7—C14 | −0.4 (6) | Zr1—N3—C16—C17 | 177.4 (5) |
O11—Zr1—O7—C14 | −152.5 (5) | C20—N3—C16—C15 | −178.9 (5) |
N3—Zr1—O7—C14 | 136.7 (5) | Zr1—N3—C16—C15 | −1.8 (6) |
N2—Zr1—O7—C14 | 2.4 (5) | O10—C15—C16—N3 | −173.5 (5) |
N1—Zr1—O7—C14 | −110.7 (5) | O9—C15—C16—N3 | 5.9 (7) |
O9—Zr1—O1—C1 | −150.1 (5) | O10—C15—C16—C17 | 7.4 (9) |
O3—Zr1—O1—C1 | 2.4 (6) | O9—C15—C16—C17 | −173.2 (6) |
O7—Zr1—O1—C1 | 136.3 (4) | C16—N3—C20—C19 | 0.4 (9) |
O5—Zr1—O1—C1 | −71.8 (5) | Zr1—N3—C20—C19 | −176.6 (5) |
O11—Zr1—O1—C1 | 71.7 (5) | C16—N3—C20—C21 | −179.9 (5) |
N3—Zr1—O1—C1 | 138.7 (5) | Zr1—N3—C20—C21 | 3.1 (7) |
N2—Zr1—O1—C1 | −110.4 (5) | Zr1—O11—C21—O12 | 164.3 (5) |
N1—Zr1—O1—C1 | 2.1 (4) | Zr1—O11—C21—C20 | −14.5 (7) |
O9—Zr1—N3—C16 | −1.3 (4) | N3—C20—C21—O12 | −172.3 (6) |
O3—Zr1—N3—C16 | −144.6 (4) | C19—C20—C21—O12 | 7.4 (10) |
O7—Zr1—N3—C16 | −101.3 (4) | N3—C20—C21—O11 | 6.7 (8) |
O1—Zr1—N3—C16 | 80.3 (4) | C19—C20—C21—O11 | −173.7 (7) |
O5—Zr1—N3—C16 | 33.0 (5) | N1—C2—C3—C4 | 2.7 (9) |
O11—Zr1—N3—C16 | 175.8 (5) | C1—C2—C3—C4 | −177.8 (6) |
N2—Zr1—N3—C16 | −52.7 (5) | C5—C4—C3—C2 | −1.2 (11) |
N1—Zr1—N3—C16 | 127.5 (4) | C3—C4—C5—C6 | −1.0 (11) |
O9—Zr1—N3—C20 | 175.7 (5) | N1—C6—C5—C4 | 1.9 (10) |
O3—Zr1—N3—C20 | 32.4 (5) | C7—C6—C5—C4 | −175.3 (6) |
O7—Zr1—N3—C20 | 75.7 (4) | N3—C20—C19—C18 | −0.1 (11) |
O1—Zr1—N3—C20 | −102.7 (5) | C21—C20—C19—C18 | −179.7 (7) |
O5—Zr1—N3—C20 | −150.0 (4) | C17—C18—C19—C20 | −1.0 (12) |
O11—Zr1—N3—C20 | −7.2 (4) | C10—C11—C12—C13 | −0.3 (10) |
N2—Zr1—N3—C20 | 124.3 (4) | N2—C13—C12—C11 | 0.4 (10) |
N1—Zr1—N3—C20 | −55.5 (5) | C14—C13—C12—C11 | −179.1 (6) |
O9—Zr1—N1—C6 | −141.6 (4) | N3—C16—C17—C18 | −1.4 (10) |
O3—Zr1—N1—C6 | 0.2 (4) | C15—C16—C17—C18 | 177.6 (6) |
O7—Zr1—N1—C6 | 40.6 (5) | C19—C18—C17—C16 | 1.8 (12) |
O1—Zr1—N1—C6 | 179.9 (5) | C12—C11—C10—C9 | −0.3 (10) |
O5—Zr1—N1—C6 | −94.5 (4) | N2—C9—C10—C11 | 1.0 (10) |
O11—Zr1—N1—C6 | 84.0 (4) | C8—C9—C10—C11 | 177.5 (6) |
N3—Zr1—N1—C6 | 131.1 (4) | N5—C23—C22—N4 | 162.0 (6) |
N2—Zr1—N1—C6 | −48.7 (5) | C24—C23—C22—N4 | −77.5 (8) |
D—H···A | D—H | H···A | D···A | D—H···A |
O13—H13A···O14 | 0.80 (8) | 2.10 (9) | 2.745 (11) | 138 (13) |
O13—H13B···O2i | 0.80 (4) | 2.10 (8) | 2.793 (8) | 145 (12) |
O14—H14A···O5ii | 0.91 (8) | 2.11 (9) | 2.978 (7) | 158 (12) |
O14—H14B···O8 | 0.85 (4) | 1.89 (5) | 2.731 (9) | 171 (14) |
O15—H15A···O12 | 0.98 (9) | 1.91 (10) | 2.857 (8) | 164 (12) |
O15—H15B···O1iii | 0.83 (4) | 2.46 (7) | 3.227 (9) | 155 (13) |
N4—H4A···O10iv | 0.89 | 1.92 | 2.791 (8) | 165 |
N4—H4B···O6ii | 0.89 | 2.24 | 2.851 (7) | 125 |
N4—H4C···O15v | 0.89 | 2.04 | 2.864 (10) | 154 |
N5—H5A···O13 | 0.89 | 1.94 | 2.769 (9) | 154 |
N5—H5B···O6iv | 0.89 | 2.18 | 2.844 (8) | 131 |
N5—H5C···O4 | 0.89 | 1.91 | 2.776 (8) | 163 |
Symmetry codes: (i) −x+3/2, y+1/2, −z+1/2; (ii) x−1/2, −y+3/2, z+1/2; (iii) −x+2, −y+1, −z+1; (iv) x−1, y, z; (v) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | (C3H12N2)[Zr(C7H3NO4)3]·3H2O |
Mr | 716.73 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 10.515 (2), 19.195 (4), 14.149 (3) |
β (°) | 103.39 (3) |
V (Å3) | 2778.1 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.48 |
Crystal size (mm) | 0.25 × 0.15 × 0.15 |
Data collection | |
Diffractometer | Stoe IPDS II diffractometer |
Absorption correction | Numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) |
Tmin, Tmax | 0.915, 0.926 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21838, 7481, 5264 |
Rint | 0.133 |
(sin θ/λ)max (Å−1) | 0.687 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.086, 0.206, 1.18 |
No. of reflections | 7481 |
No. of parameters | 427 |
No. of restraints | 7 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.09, −0.77 |
Computer programs: X-AREA (Stoe & Cie, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
O13—H13A···O14 | 0.80 (8) | 2.10 (9) | 2.745 (11) | 138 (13) |
O13—H13B···O2i | 0.80 (4) | 2.10 (8) | 2.793 (8) | 145 (12) |
O14—H14A···O5ii | 0.91 (8) | 2.11 (9) | 2.978 (7) | 158 (12) |
O14—H14B···O8 | 0.85 (4) | 1.89 (5) | 2.731 (9) | 171 (14) |
O15—H15A···O12 | 0.98 (9) | 1.91 (10) | 2.857 (8) | 164 (12) |
O15—H15B···O1iii | 0.83 (4) | 2.46 (7) | 3.227 (9) | 155 (13) |
N4—H4A···O10iv | 0.89 | 1.92 | 2.791 (8) | 164.9 |
N4—H4B···O6ii | 0.89 | 2.24 | 2.851 (7) | 125.2 |
N4—H4C···O15v | 0.89 | 2.04 | 2.864 (10) | 154.4 |
N5—H5A···O13 | 0.89 | 1.94 | 2.769 (9) | 153.9 |
N5—H5B···O6iv | 0.89 | 2.18 | 2.844 (8) | 131.3 |
N5—H5C···O4 | 0.89 | 1.91 | 2.776 (8) | 163.4 |
Symmetry codes: (i) −x+3/2, y+1/2, −z+1/2; (ii) x−1/2, −y+3/2, z+1/2; (iii) −x+2, −y+1, −z+1; (iv) x−1, y, z; (v) −x+1, −y+1, −z+1. |
Acknowledgements
We are grateful to the Islamic Azad University, North Tehran Branch, for financial support.
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Pyridine-2,6-dicarboxylic acid (pydcH2) was commonly used by Aghabozorg and his co-workers as an acid in proton transfer systems (Aghabozorg et al. 2008). Our group have been focused on forming ion pairs between 2,6-pydcH2 and various organic bases (Pasdar et al., 2010a; Pasdar et al. 2011a,b). The structure of two proton transfer compound containing nine-coordinated [ZrIV(2,6-pydc)3]2- moiety were reported with the counter cationic part of 2,6-pyridinediamine(Aghabozorg et al. 2005) and 2,4,6-triamino-1,3,5-triazine (Daneshvar et al. 2008), respectively. Recently, we report the structure of (2a6mpH)2[Zr(2,6-pydc)3].2H2O (Pasdar et al. 2011a).
Herein, we report the synthesis and crystal structure of (1,2-pdaH2)[Zr(2,6-pydc)3].3H2O. The title compound was prepared by the reaction of ZrCl4.3H2O, propane-1,2-diamine and 2,6-pyridinedicarboxylic acid in aqueous solution. Fig.1 present the molecular structure of the title compound. X-ray diffraction study shows that Zirconium(IV) ion is coordinated by three pydc2- moiety in a distorted tricapped trigonal prismatic geometry and pydc2- ligands act as tridentate ligand. Coordination environment around Zirconium(IV) ion in the (1,2-pdaH2)[Zr(2,6-pydc)3].3H2O is presented in Fig. 2. The Zr—N and Zr—O bond lengths and angles are in the normal ranges (Aghabozorg et al. 2005; Daneshvar et al. 2008). The crystal packing diagram of the title compound is shown in Fig. 3. In the crystal packing diagram of the title compound, there are several intermolecular N—H···O, O—H···O hydrogen bonds which play an important role in stabilization of crystal structure (Table 1 and Fig. 3).